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Search of human proteins with 154426322
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154426322 ubiquitin protein ligase E3 component n-recognin 7
(putative) isoform 2 [Homo sapiens]
(425 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154426322 ubiquitin protein ligase E3 component n-recognin 7 ... 884 0.0
gi|154426264 ubiquitin protein ligase E3 component n-recognin 7 ... 694 0.0
gi|38788260 bromodomain PHD finger transcription factor isoform ... 47 3e-05
gi|38788274 bromodomain PHD finger transcription factor isoform ... 47 3e-05
gi|117190342 PHD finger protein 2 [Homo sapiens] 47 4e-05
gi|32698700 PHD finger protein 8 [Homo sapiens] 45 1e-04
gi|90093355 jumonji C domain containing histone demethylase 1 ho... 45 2e-04
gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens] 40 0.004
gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens] 37 0.026
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens] 37 0.026
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 37 0.034
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 35 0.099
gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens] 35 0.099
gi|18375619 death inducer-obliterator 1 isoform a [Homo sapiens] 35 0.099
gi|18375617 death inducer-obliterator 1 isoform a [Homo sapiens] 35 0.099
gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens] 35 0.099
gi|116268091 PHD finger protein 23 [Homo sapiens] 34 0.22
gi|9625002 integrin, beta 6 [Homo sapiens] 34 0.29
gi|6678764 metal response element binding transcription factor 2... 33 0.49
gi|156119615 myosin IXA [Homo sapiens] 33 0.64
gi|4506221 proteasome 26S non-ATPase subunit 12 isoform 1 [Homo ... 33 0.64
gi|28872765 proteasome 26S non-ATPase subunit 12 isoform 2 [Homo... 33 0.64
gi|31541941 heat shock 70kDa protein 4-like [Homo sapiens] 32 0.84
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa... 32 0.84
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 32 1.1
gi|110611184 chromodomain helicase DNA binding protein 2 isoform... 32 1.1
gi|61743952 1-acylglycerol-3-phosphate O-acyltransferase 5 [Homo... 31 1.9
gi|11034855 TMEM9 domain family, member B [Homo sapiens] 31 1.9
gi|118498356 kinectin 1 isoform a [Homo sapiens] 31 2.4
gi|118498368 kinectin 1 isoform c [Homo sapiens] 31 2.4
>gi|154426322 ubiquitin protein ligase E3 component n-recognin 7
(putative) isoform 2 [Homo sapiens]
Length = 425
Score = 884 bits (2285), Expect = 0.0
Identities = 425/425 (100%), Positives = 425/425 (100%)
Query: 1 MAGAEGAAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYA 60
MAGAEGAAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYA
Sbjct: 1 MAGAEGAAGRQSELEPVVSLVDVLEEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYA 60
Query: 61 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLLPDKAKV 120
CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLLPDKAKV
Sbjct: 61 CSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKNLECKLLPDKAKV 120
Query: 121 NSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEM 180
NSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEM
Sbjct: 121 NSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEM 180
Query: 181 VCQACMKRCSFLWAYAAQLAVTKISTEDDGLVRNIDGIGDQEVIKPENGEHQDSTLKEDV 240
VCQACMKRCSFLWAYAAQLAVTKISTEDDGLVRNIDGIGDQEVIKPENGEHQDSTLKEDV
Sbjct: 181 VCQACMKRCSFLWAYAAQLAVTKISTEDDGLVRNIDGIGDQEVIKPENGEHQDSTLKEDV 240
Query: 241 PEQGKDDVREVKVEQNSEPCAGSSSESDLQTVFKNESLNAESKSGCKLQELKAKQLIKKD 300
PEQGKDDVREVKVEQNSEPCAGSSSESDLQTVFKNESLNAESKSGCKLQELKAKQLIKKD
Sbjct: 241 PEQGKDDVREVKVEQNSEPCAGSSSESDLQTVFKNESLNAESKSGCKLQELKAKQLIKKD 300
Query: 301 TATYWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDT 360
TATYWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDT
Sbjct: 301 TATYWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDT 360
Query: 361 LSSMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM 420
LSSMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM
Sbjct: 361 LSSMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGM 420
Query: 421 QYYCS 425
QYYCS
Sbjct: 421 QYYCS 425
>gi|154426264 ubiquitin protein ligase E3 component n-recognin 7
(putative) isoform 3 [Homo sapiens]
Length = 349
Score = 694 bits (1792), Expect = 0.0
Identities = 332/333 (99%), Positives = 332/333 (99%)
Query: 93 TKRNFRCDCGNSKFKNLECKLLPDKAKVNSGNKYNDNFFGLYCICKRPYPDPEDEIPDEM 152
T RNFRCDCGNSKFKNLECKLLPDKAKVNSGNKYNDNFFGLYCICKRPYPDPEDEIPDEM
Sbjct: 17 TLRNFRCDCGNSKFKNLECKLLPDKAKVNSGNKYNDNFFGLYCICKRPYPDPEDEIPDEM 76
Query: 153 IQCVVCEDWFHGRHLGAIPPESGDFQEMVCQACMKRCSFLWAYAAQLAVTKISTEDDGLV 212
IQCVVCEDWFHGRHLGAIPPESGDFQEMVCQACMKRCSFLWAYAAQLAVTKISTEDDGLV
Sbjct: 77 IQCVVCEDWFHGRHLGAIPPESGDFQEMVCQACMKRCSFLWAYAAQLAVTKISTEDDGLV 136
Query: 213 RNIDGIGDQEVIKPENGEHQDSTLKEDVPEQGKDDVREVKVEQNSEPCAGSSSESDLQTV 272
RNIDGIGDQEVIKPENGEHQDSTLKEDVPEQGKDDVREVKVEQNSEPCAGSSSESDLQTV
Sbjct: 137 RNIDGIGDQEVIKPENGEHQDSTLKEDVPEQGKDDVREVKVEQNSEPCAGSSSESDLQTV 196
Query: 273 FKNESLNAESKSGCKLQELKAKQLIKKDTATYWPLNWRSKLCTCQDCMKMYGDLDVLFLT 332
FKNESLNAESKSGCKLQELKAKQLIKKDTATYWPLNWRSKLCTCQDCMKMYGDLDVLFLT
Sbjct: 197 FKNESLNAESKSGCKLQELKAKQLIKKDTATYWPLNWRSKLCTCQDCMKMYGDLDVLFLT 256
Query: 333 DEYDTVLAYENKGKIAQATDRSDPLMDTLSSMNRVQQVELICEYNDLKTELKDYLKRFAD 392
DEYDTVLAYENKGKIAQATDRSDPLMDTLSSMNRVQQVELICEYNDLKTELKDYLKRFAD
Sbjct: 257 DEYDTVLAYENKGKIAQATDRSDPLMDTLSSMNRVQQVELICEYNDLKTELKDYLKRFAD 316
Query: 393 EGTVVKREDIQQFFEEFQSKKRRRVDGMQYYCS 425
EGTVVKREDIQQFFEEFQSKKRRRVDGMQYYCS
Sbjct: 317 EGTVVKREDIQQFFEEFQSKKRRRVDGMQYYCS 349
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 47.4 bits (111), Expect = 3e-05
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 117 KAKVNSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGD 176
K +++ +K LYCICK PY + + I C C++W+HGR +G + E+
Sbjct: 2709 KKMISTTSKETKKDTKLYCICKTPYDESKF-----YIGCDRCQNWYHGRCVGILQSEAEL 2763
Query: 177 FQEMVCQAC 185
E VC C
Sbjct: 2764 IDEYVCPQC 2772
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 47.4 bits (111), Expect = 3e-05
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 117 KAKVNSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGD 176
K +++ +K LYCICK PY + + I C C++W+HGR +G + E+
Sbjct: 2726 KKMISTTSKETKKDTKLYCICKTPYDESKF-----YIGCDRCQNWYHGRCVGILQSEAEL 2780
Query: 177 FQEMVCQAC 185
E VC C
Sbjct: 2781 IDEYVCPQC 2789
Score = 29.3 bits (64), Expect = 7.1
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 18/101 (17%)
Query: 203 KISTEDDG--LVRNIDGIGDQEVIKPENGEHQDSTLKEDVPEQGKDDVREVKVEQNS--- 257
K TE+D +N + DQ + K D +D PEQGK +V + K E+++
Sbjct: 580 KNETENDSKDAEKNREEFEDQSLEKDS-----DDKTPDDDPEQGKSEVGDFKSEKSNGEL 634
Query: 258 --EPCAGSSSESDLQTVFKNESLNAESKSGCKLQELKAKQL 296
P AG + + + + + ++ KL +LK++Q+
Sbjct: 635 SESPGAGKGASGSTRIITRLRNPDS------KLSQLKSQQV 669
>gi|117190342 PHD finger protein 2 [Homo sapiens]
Length = 1096
Score = 46.6 bits (109), Expect = 4e-05
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 133 LYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEMVCQACMK 187
+YC+C+ PY ++ MI+C C+DWFHG +G E+ D C C K
Sbjct: 6 VYCVCRLPY-----DVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 55
>gi|32698700 PHD finger protein 8 [Homo sapiens]
Length = 1024
Score = 45.1 bits (105), Expect = 1e-04
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 133 LYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEMVCQAC 185
+YC+C+ PY ++ MI+C +C+DWFHG +G ++ D C C
Sbjct: 6 VYCLCRLPY-----DVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNC 53
>gi|90093355 jumonji C domain containing histone demethylase 1
homolog D [Homo sapiens]
Length = 941
Score = 44.7 bits (104), Expect = 2e-04
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 133 LYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEMVCQAC 185
+YC+C++PY ++ MI+C +C+DWFHG +G + D C C
Sbjct: 38 VYCVCRQPY-----DVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNC 85
>gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens]
Length = 843
Score = 40.0 bits (92), Expect = 0.004
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 17 VVSLVDVLEEDEELENEACAVLGGSDSEKCSY---SQGSVKRQALYACSTCTPEGEEPAG 73
+ S V+V +D ++ N A+ +C Y S S Y C TC
Sbjct: 722 LASGVNVTMKDNKIMNNQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRN--A 779
Query: 74 ICLACSYECHGSHKLFELYTKRNFRCDCGNSKFKN 108
IC+ C +CH H + E F CDCG N
Sbjct: 780 ICVNCIKKCHQGHDV-EFIRHDRFFCDCGAGTLSN 813
>gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]
Length = 660
Score = 37.4 bits (85), Expect = 0.026
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 133 LYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEMVCQACMKR 188
+YCIC++P +I MI C C +WFHG + + +E C+ C ++
Sbjct: 27 IYCICRKP------DINCFMIGCDNCNEWFHGDCIRITEKMAKAIREWYCRECREK 76
>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
Length = 656
Score = 37.4 bits (85), Expect = 0.026
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 133 LYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAIPPESGDFQEMVCQACMKR 188
+YCIC++P +I MI C C +WFHG + + +E C+ C ++
Sbjct: 27 IYCICRKP------DINCFMIGCDNCNEWFHGDCIRITEKMAKAIREWYCRECREK 76
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 37.0 bits (84), Expect = 0.034
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Query: 58 LYACSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRC-DCGNSKFKNLECKLLPD 116
L C C PA CL SY + K RC CG + KN + + D
Sbjct: 1265 LLECERCR-HAYHPA--CLGPSYPTRATRKRRHWICSACVRCKSCGATPGKNWDVEWSGD 1321
Query: 117 KAKVNSGNKYNDNFFGLYC-ICKRPYPDPEDEIPDEMIQCVVCEDWFHGR 165
+ + + G YC IC R Y D + E +M+QC C+ W H +
Sbjct: 1322 YSLCPRCTQLYEK--GNYCPICTRCYEDNDYE--SKMMQCAQCDHWVHAK 1367
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 35.4 bits (80), Expect = 0.099
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 133 LYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLG 168
LYCIC++P+ + MI C CE+WFHG +G
Sbjct: 269 LYCICRQPHNNRF------MICCDRCEEWFHGDCVG 298
>gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]
Length = 1189
Score = 35.4 bits (80), Expect = 0.099
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 133 LYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLG 168
LYCIC++P+ + MI C CE+WFHG +G
Sbjct: 269 LYCICRQPHNNRF------MICCDRCEEWFHGDCVG 298
>gi|18375619 death inducer-obliterator 1 isoform a [Homo sapiens]
Length = 562
Score = 35.4 bits (80), Expect = 0.099
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 133 LYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLG 168
LYCIC++P+ + MI C CE+WFHG +G
Sbjct: 269 LYCICRQPHNNRF------MICCDRCEEWFHGDCVG 298
>gi|18375617 death inducer-obliterator 1 isoform a [Homo sapiens]
Length = 562
Score = 35.4 bits (80), Expect = 0.099
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 133 LYCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLG 168
LYCIC++P+ + MI C CE+WFHG +G
Sbjct: 269 LYCICRQPHNNRF------MICCDRCEEWFHGDCVG 298
>gi|82659109 retinoblastoma-associated factor 600 [Homo sapiens]
Length = 5183
Score = 35.4 bits (80), Expect = 0.099
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 23 VLEEDEELENEACAVLGGSDSEKCSYS--QGSVKRQALYACSTCTPEGEEPAGICLACSY 80
V EED + E+ L ++ C+++ Q Q Y C TC + + G+C C+
Sbjct: 1642 VEEEDSQAEDSDEDSLC---NKLCTFTITQKEFMNQHWYHCHTC--KMVDGVGVCTVCAK 1696
Query: 81 ECHGSHKLFELYTK-RNFRCDCG 102
CH H++ Y K +F CDCG
Sbjct: 1697 VCHKDHEI--SYAKYGSFFCDCG 1717
>gi|116268091 PHD finger protein 23 [Homo sapiens]
Length = 403
Score = 34.3 bits (77), Expect = 0.22
Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 27/139 (19%)
Query: 25 EEDEELENEACAVLGGSDSEKCSYSQGSVKRQALYACSTCTPEGEEPAGICLACSYECHG 84
EE+EE E E V+GG + R +T PEG PA
Sbjct: 253 EEEEEEEEEMATVVGGEAPVPVLPTPPEAPRPP----ATVHPEGVPPAD---------SE 299
Query: 85 SHKLFELYTKRNFRCDCGNSKFKNLECKLLPDKAKVNSGNKYNDNFFGLYCICKRPYPDP 144
S ++ T ++ G++ E +++ + V SG +D++ + C C++P+
Sbjct: 300 SKEVGSTETSQD-----GDASSSEGEMRVMDEDIMVESG---DDSWDLITCYCRKPFAG- 350
Query: 145 EDEIPDEMIQCVVCEDWFH 163
MI+C +C W H
Sbjct: 351 -----RPMIECSLCGTWIH 364
>gi|9625002 integrin, beta 6 [Homo sapiens]
Length = 788
Score = 33.9 bits (76), Expect = 0.29
Identities = 43/179 (24%), Positives = 60/179 (33%), Gaps = 45/179 (25%)
Query: 42 DSEKCSYSQGSVKRQALYACSTCTPEGEEPAGICLACSYECHGSHKLFELYTKRNFRCDC 101
+S KC + GS + C C CH H RC+C
Sbjct: 463 NSSKCHHGNGS------FQCGVCA----------------CHPGHM--------GPRCEC 492
Query: 102 GNSKFKNLECKLLPDKAKVNSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCEDW 161
G CK PD S + D + G CIC + P I Q C+++
Sbjct: 493 GEDMLSTDSCKEAPDHP---SCSGRGDCYCG-QCIC---HLSPYGNIYGPYCQ---CDNF 542
Query: 162 FHGRHLGAIPPESGDFQEMVCQACMKRCSFLWAYAAQLAVTKISTEDDGLVRNIDGIGD 220
RH G + +GD C C+ R + Y T +DG++ G GD
Sbjct: 543 SCVRHKGLLCGGNGDCD---CGECVCRSGWTGEYCNCTTSTDSCVSEDGVL--CSGRGD 596
>gi|6678764 metal response element binding transcription factor 2
[Homo sapiens]
Length = 593
Score = 33.1 bits (74), Expect = 0.49
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 134 YCICKRPYPDPEDEIPDEMIQCVVCEDWFHGRHLGAI--PPESGD-FQEMVCQAC----- 185
YC C P + +M+QC C+ WFH + + P GD F +C C
Sbjct: 203 YCYCGGP-----GDWYLKMLQCCKCKQWFHEACVQCLQKPMLFGDRFYTFICSVCSSGPE 257
Query: 186 -MKRCSFLWAYAAQLAVTKIS 205
+KR W A L + +S
Sbjct: 258 YLKRLPLQWVDIAHLCLYNLS 278
>gi|156119615 myosin IXA [Homo sapiens]
Length = 2548
Score = 32.7 bits (73), Expect = 0.64
Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 38/153 (24%)
Query: 11 QSELEPVVSLVDVLE----EDEELENEACAVLGGSDSEK-----CSYSQGSVKRQALYAC 61
Q E E + + VLE +DE LE+EA +G +DS + Y+ ++L
Sbjct: 2344 QKEKEELTFEMLVLEPRASDDETLESEAS--IGTADSSENLNMESEYAISEKSERSLALS 2401
Query: 62 STCTPEGEEPAG----------------------ICLACSYECHGSHKLFELYTKRNFRC 99
S T EP+ +CL+ + HG+ KLF++Y+K F
Sbjct: 2402 SLKTAGKSEPSSKLRKQLKKQQDSLDVVDSSVSSLCLSNTASSHGTRKLFQIYSKSPFYR 2461
Query: 100 DCGNSKFKNLE-----CKLLPDKAKVNSGNKYN 127
++ +E K L DK + S +N
Sbjct: 2462 AASGNEALGMEGPLGQTKFLEDKPQFISRGTFN 2494
>gi|4506221 proteasome 26S non-ATPase subunit 12 isoform 1 [Homo
sapiens]
Length = 456
Score = 32.7 bits (73), Expect = 0.64
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 321 KMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPL-MDTLSSMNRVQQVELICEYNDL 379
K+Y +++ LT T+ E G + +A L ++T SM + ++VE I E L
Sbjct: 135 KIYVEIERARLTKTLATIK--EQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRL 192
Query: 380 KTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGMQYY 423
+KDY++ ++ ++ +FF+E ++K + ++YY
Sbjct: 193 CLAVKDYIRT-----QIISKKINTKFFQEENTEKLK----LKYY 227
>gi|28872765 proteasome 26S non-ATPase subunit 12 isoform 2 [Homo
sapiens]
Length = 436
Score = 32.7 bits (73), Expect = 0.64
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 321 KMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPL-MDTLSSMNRVQQVELICEYNDL 379
K+Y +++ LT T+ E G + +A L ++T SM + ++VE I E L
Sbjct: 115 KIYVEIERARLTKTLATIK--EQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRL 172
Query: 380 KTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDGMQYY 423
+KDY++ ++ ++ +FF+E ++K + ++YY
Sbjct: 173 CLAVKDYIRT-----QIISKKINTKFFQEENTEKLK----LKYY 207
>gi|31541941 heat shock 70kDa protein 4-like [Homo sapiens]
Length = 839
Score = 32.3 bits (72), Expect = 0.84
Identities = 41/197 (20%), Positives = 80/197 (40%), Gaps = 50/197 (25%)
Query: 212 VRNIDGIGDQEVIKPEN--GEHQDSTLKEDVP--EQGKDDVREVKVEQNS--EPCAGSSS 265
+ I + VI+ +N G+H D+ ++ + + KD++ +++V+Q + C +
Sbjct: 486 IHGIFSVASASVIEKQNLEGDHSDAPMETETSFKNENKDNMDKMQVDQEEGHQKCHAEHT 545
Query: 266 ESDLQTVFKNESLNAESKSGCKLQELKAKQLIKKDTATYWPLNWRSKLCTC--QDCMKMY 323
+ + + A++KS ++ + Q +KK L +S LC QD + Y
Sbjct: 546 PEE-----EIDHTGAKTKSAVSDKQDRLNQTLKKGKVKSIDLPIQSSLCRQLGQDLLNSY 600
Query: 324 GDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDTLSSMNRVQQVELICEYNDLKTEL 383
EN+GK+ + Q +L E ND K +
Sbjct: 601 -----------------IENEGKM-------------------IMQDKLEKERNDAKNAV 624
Query: 384 KDYLKRFADE-GTVVKR 399
++Y+ F D GTV ++
Sbjct: 625 EEYVYDFRDRLGTVYEK 641
>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
sapiens]
Length = 1690
Score = 32.3 bits (72), Expect = 0.84
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 137 CKRPYPDPEDEIPDEMIQCVV-CEDWFHGRHLGAIPPESGDFQEMVCQACMKR 188
C+RP D D +QC C++WFH +G + PE + ++ +C C K+
Sbjct: 1615 CQRPCKDKVD-----WVQCDGGCDEWFHQVCVG-VSPEMAENEDYICINCAKK 1661
Score = 29.6 bits (65), Expect = 5.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 7/30 (23%)
Query: 134 YCICKRPYPDPEDEIPDEMIQCVVCEDWFH 163
+CIC++ M+QC +C+DWFH
Sbjct: 1163 FCICRKT-------ASGFMLQCELCKDWFH 1185
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 32.0 bits (71), Expect = 1.1
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 227 ENGEHQDSTLKEDVPEQ-------GKDDVREVKVEQNSEPCAGSSSESD-----LQTVFK 274
+ + +DS+L + G D + + EQ S+P +G SES+ ++ +
Sbjct: 6 DKSQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSE 65
Query: 275 NESLNAESKSGCKLQELKAKQLIKKD 300
+ES +A SKS L E K K KK+
Sbjct: 66 SESESAGSKSQPVLPEAKEKPASKKE 91
>gi|110611184 chromodomain helicase DNA binding protein 2 isoform 2
[Homo sapiens]
Length = 501
Score = 32.0 bits (71), Expect = 1.1
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 227 ENGEHQDSTLKEDVPEQ-------GKDDVREVKVEQNSEPCAGSSSESD-----LQTVFK 274
+ + +DS+L + G D + + EQ S+P +G SES+ ++ +
Sbjct: 6 DKSQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSE 65
Query: 275 NESLNAESKSGCKLQELKAKQLIKKD 300
+ES +A SKS L E K K KK+
Sbjct: 66 SESESAGSKSQPVLPEAKEKPASKKE 91
>gi|61743952 1-acylglycerol-3-phosphate O-acyltransferase 5 [Homo
sapiens]
Length = 364
Score = 31.2 bits (69), Expect = 1.9
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 318 DCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDTLSSMNRVQQVELICEYN 377
DCMK Y LD + YD + YE K Q R P M T ++ + +
Sbjct: 216 DCMKNY--LDAI-----YDVTVVYEGKDDGGQR--RESPTM-TEFLCKECPKIHIHIDRI 265
Query: 378 DLKT--ELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDG 419
D K E +++++R+ E +K + + +F+E ++R+R G
Sbjct: 266 DKKDVPEEQEHMRRWLHERFEIKDKMLIEFYESPDPERRKRFPG 309
>gi|11034855 TMEM9 domain family, member B [Homo sapiens]
Length = 198
Score = 31.2 bits (69), Expect = 1.9
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 106 FKNLECKLLPDKAKVNSGNKYNDNFFGLYCICKRPYPDPEDEIPDEMIQCVVCE 159
F+++ CK + K NSG+ YN N C C PD C+ CE
Sbjct: 37 FEDVRCKCICPPYKENSGHIYNKNISQKDCDCLHVVEPMPVRGPDVEAYCLRCE 90
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 30.8 bits (68), Expect = 2.4
Identities = 17/74 (22%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 203 KISTEDDGLVRNIDGIGDQEVIKPENGEHQDSTLKEDVPEQGKDDVREVKVEQNSEPCAG 262
K+ E DG +++++ + + E++K N E LK+++ + K+++ V++E+ ++ +
Sbjct: 801 KVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEI-KALKEEIGNVQLEK-AQQLSI 858
Query: 263 SSSESDLQTVFKNE 276
+S +LQ + K +
Sbjct: 859 TSKVQELQNLLKGK 872
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 30.8 bits (68), Expect = 2.4
Identities = 17/74 (22%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 203 KISTEDDGLVRNIDGIGDQEVIKPENGEHQDSTLKEDVPEQGKDDVREVKVEQNSEPCAG 262
K+ E DG +++++ + + E++K N E LK+++ + K+++ V++E+ ++ +
Sbjct: 801 KVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEI-KALKEEIGNVQLEK-AQQLSI 858
Query: 263 SSSESDLQTVFKNE 276
+S +LQ + K +
Sbjct: 859 TSKVQELQNLLKGK 872
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,575,809
Number of Sequences: 37866
Number of extensions: 864503
Number of successful extensions: 2828
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2762
Number of HSP's gapped (non-prelim): 109
length of query: 425
length of database: 18,247,518
effective HSP length: 105
effective length of query: 320
effective length of database: 14,271,588
effective search space: 4566908160
effective search space used: 4566908160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.