Guide to the Human Genome
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Name: SBNO2 Sequence: fasta or formatted (1309aa) NCBI GI: 154355004
Description:

strawberry notch homolog 2 isoform 2

Referenced in:

Notch Pathway

Other entries for this name:
alt prot [1366aa] strawberry notch homolog 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7        114           2
 C cysteine            1.6         21           1
 D aspartate           5.8         76           3
 E glutamate           7.0         92           4
 F phenylalanine       4.0         53           2
 G glycine             8.5        111           3
 H histidine           2.4         31           2
 I isoleucine          4.0         52           2
 K lysine              4.5         59           2
 L leucine            10.2        134           2
 M methionine          1.5         19           1
 N asparagine          2.3         30           1
 P proline             6.0         78           4
 Q glutamine           4.7         61           2
 R arginine            7.3         95           3
 S serine              8.0        105           4
 T threonine           3.8         50           3
 V valine              6.3         83           2
 W tryptophan          1.1         15           1
 Y tyrosine            2.3         30           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   strawberry notch homolog 2 isoform 2 
SBNO2                 0.971   strawberry notch homolog 2 isoform 1 
SBNO1                 0.227   sno, strawberry notch homolog 1 
TAF4                  0.008   TBP-associated factor 4 
PRR12                 0.007   proline rich 12 
CDKN1C                0.007   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.007   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.007   cyclin-dependent kinase inhibitor 1C isoform a 
FLJ22184              0.007   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.007   PREDICTED: hypothetical protein LOC80164 
ZFHX2                 0.007   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.007   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.007   PREDICTED: zinc finger homeobox 2 
FLJ22184              0.007   PREDICTED: hypothetical protein FLJ22184 
C16orf7               0.007   chromosome 16 open reading frame 7 
LMTK3                 0.007   lemur tyrosine kinase 3 
FHOD3                 0.006   formin homology 2 domain containing 3 
CDC42EP1              0.006   CDC42 effector protein 1 
EN1                   0.006   engrailed homeobox 1 
ONECUT2               0.005   one cut domain, family member 2 
ZNF282                0.005   zinc finger protein 282 
PELP1                 0.005   proline, glutamic acid and leucine rich protein 1 [...
WIPF3                 0.005   WAS/WASL interacting protein family, member 3 [Homo...
RERE                  0.005   atrophin-1 like protein isoform b 
RERE                  0.005   atrophin-1 like protein isoform a 
RERE                  0.005   atrophin-1 like protein isoform a 
APBB1IP               0.005   amyloid beta (A4) precursor protein-binding, family ...
RANGAP1               0.005   Ran GTPase activating protein 1 
ZBTB4                 0.005   zinc finger and BTB domain containing 4 
ZBTB4                 0.005   zinc finger and BTB domain containing 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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