Search of human proteins with 153792103

Search of human proteins with 153792103

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|153792103 tetratricopeptide repeat domain 22 isoform 2 [Homo
sapiens]
         (372 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|153792103 tetratricopeptide repeat domain 22 isoform 2 [Homo ...   760   0.0  
gi|166235180 tetratricopeptide repeat domain 22 isoform 1 [Homo ...   696   0.0  
gi|211971008 acyl-Coenzyme A dehydrogenase family, member 10 iso...    52   7e-07
gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H...    48   2e-05
gi|231571329 nitric oxide synthase 3 isoform 3 [Homo sapiens]          46   5e-05
gi|194578909 eukaryotic translation initiation factor 4E isoform...    46   6e-05
gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]          45   1e-04
gi|8922785 hypothetical protein LOC55267 [Homo sapiens]                42   7e-04
gi|239755282 PREDICTED: similar to Tripartite motif-containing p...    42   0.001
gi|239752570 PREDICTED: hypothetical protein XP_002348292 [Homo ...    42   0.001
gi|170172518 microtubule associated monoxygenase, calponin and L...    40   0.003
gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens]        36   0.064
gi|238908495 similar to pleckstrin homology domain protein (5V32...    35   0.14 
gi|109255236 centrosomal protein 63 isoform d [Homo sapiens]           34   0.19 
gi|66730423 hypothetical protein LOC389384 [Homo sapiens]              34   0.19 
gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens]       34   0.24 
gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens]       34   0.24 
gi|167466177 cell division cycle protein 27 isoform 1 [Homo sapi...    33   0.54 
gi|167466175 cell division cycle protein 27 isoform 2 [Homo sapi...    33   0.54 
gi|110227629 translin-associated factor X interacting protein 1 ...    31   1.6  
gi|7662078 tetratricopeptide repeat domain 37 [Homo sapiens]           31   2.0  
gi|229577238 tetratricopeptide repeat domain 18 [Homo sapiens]         30   2.7  
gi|222136634 tetratricopeptide repeat domain 26 isoform 1 [Homo ...    30   3.5  
gi|222136605 tetratricopeptide repeat domain 26 isoform 2 [Homo ...    30   3.5  
gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Ho...    30   4.6  
gi|151301053 RNA binding motif protein 33 [Homo sapiens]               30   4.6  
gi|239751290 PREDICTED: hypothetical protein [Homo sapiens]            29   6.0  
gi|111955162 5-azacytidine induced 1 isoform b [Homo sapiens]          29   6.0  
gi|27436948 lamin A/C isoform 3 [Homo sapiens]                         29   7.8  
gi|5031875 lamin A/C isoform 2 [Homo sapiens]                          29   7.8  

>gi|153792103 tetratricopeptide repeat domain 22 isoform 2 [Homo
           sapiens]
          Length = 372

 Score =  760 bits (1963), Expect = 0.0
 Identities = 372/372 (100%), Positives = 372/372 (100%)

Query: 1   MAELEAVADDLDALIDDLDYLPGHFHLEMQLNFEPRSPAPQRARDLKLQREGLRQELQLA 60
           MAELEAVADDLDALIDDLDYLPGHFHLEMQLNFEPRSPAPQRARDLKLQREGLRQELQLA
Sbjct: 1   MAELEAVADDLDALIDDLDYLPGHFHLEMQLNFEPRSPAPQRARDLKLQREGLRQELQLA 60

Query: 61  AAPQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEE 120
           AAPQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEE
Sbjct: 61  AAPQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEE 120

Query: 121 ACAARLADLMGLAEEPEAAGDPQLRAARCLAEQGYAHGFDVGCASPEERARGLAAGIALY 180
           ACAARLADLMGLAEEPEAAGDPQLRAARCLAEQGYAHGFDVGCASPEERARGLAAGIALY
Sbjct: 121 ACAARLADLMGLAEEPEAAGDPQLRAARCLAEQGYAHGFDVGCASPEERARGLAAGIALY 180

Query: 181 DKALGYGQQIPMEEKRGWYFTMATLYIRLDGIFLELGSEEQKRLPAFNRTLALLRQVLKS 240
           DKALGYGQQIPMEEKRGWYFTMATLYIRLDGIFLELGSEEQKRLPAFNRTLALLRQVLKS
Sbjct: 181 DKALGYGQQIPMEEKRGWYFTMATLYIRLDGIFLELGSEEQKRLPAFNRTLALLRQVLKS 240

Query: 241 EDPRHRALAWCYLGMLLERKDTFSTTPMGVHDCGYSGTDPLDCFGKAIEIAKNQPPILNR 300
           EDPRHRALAWCYLGMLLERKDTFSTTPMGVHDCGYSGTDPLDCFGKAIEIAKNQPPILNR
Sbjct: 241 EDPRHRALAWCYLGMLLERKDTFSTTPMGVHDCGYSGTDPLDCFGKAIEIAKNQPPILNR 300

Query: 301 LAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCTRAKRRGLTMLPRLVSNSWAQAVL 360
           LAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCTRAKRRGLTMLPRLVSNSWAQAVL
Sbjct: 301 LAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCTRAKRRGLTMLPRLVSNSWAQAVL 360

Query: 361 PPRPPKVLEFQV 372
           PPRPPKVLEFQV
Sbjct: 361 PPRPPKVLEFQV 372


>gi|166235180 tetratricopeptide repeat domain 22 isoform 1 [Homo
           sapiens]
          Length = 569

 Score =  696 bits (1797), Expect = 0.0
 Identities = 340/340 (100%), Positives = 340/340 (100%)

Query: 1   MAELEAVADDLDALIDDLDYLPGHFHLEMQLNFEPRSPAPQRARDLKLQREGLRQELQLA 60
           MAELEAVADDLDALIDDLDYLPGHFHLEMQLNFEPRSPAPQRARDLKLQREGLRQELQLA
Sbjct: 1   MAELEAVADDLDALIDDLDYLPGHFHLEMQLNFEPRSPAPQRARDLKLQREGLRQELQLA 60

Query: 61  AAPQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEE 120
           AAPQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEE
Sbjct: 61  AAPQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEE 120

Query: 121 ACAARLADLMGLAEEPEAAGDPQLRAARCLAEQGYAHGFDVGCASPEERARGLAAGIALY 180
           ACAARLADLMGLAEEPEAAGDPQLRAARCLAEQGYAHGFDVGCASPEERARGLAAGIALY
Sbjct: 121 ACAARLADLMGLAEEPEAAGDPQLRAARCLAEQGYAHGFDVGCASPEERARGLAAGIALY 180

Query: 181 DKALGYGQQIPMEEKRGWYFTMATLYIRLDGIFLELGSEEQKRLPAFNRTLALLRQVLKS 240
           DKALGYGQQIPMEEKRGWYFTMATLYIRLDGIFLELGSEEQKRLPAFNRTLALLRQVLKS
Sbjct: 181 DKALGYGQQIPMEEKRGWYFTMATLYIRLDGIFLELGSEEQKRLPAFNRTLALLRQVLKS 240

Query: 241 EDPRHRALAWCYLGMLLERKDTFSTTPMGVHDCGYSGTDPLDCFGKAIEIAKNQPPILNR 300
           EDPRHRALAWCYLGMLLERKDTFSTTPMGVHDCGYSGTDPLDCFGKAIEIAKNQPPILNR
Sbjct: 241 EDPRHRALAWCYLGMLLERKDTFSTTPMGVHDCGYSGTDPLDCFGKAIEIAKNQPPILNR 300

Query: 301 LAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCTRAK 340
           LAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCTRAK
Sbjct: 301 LAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCTRAK 340


>gi|211971008 acyl-Coenzyme A dehydrogenase family, member 10
           isoform a [Homo sapiens]
          Length = 1090

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 22/33 (66%), Positives = 27/33 (81%)

Query: 340 KRRGLTMLPRLVSNSWAQAVLPPRPPKVLEFQV 372
           KR+G  +LP+LVSNSWAQA+ PP PPKV+  QV
Sbjct: 230 KRQGFAVLPKLVSNSWAQAIYPPYPPKVVRLQV 262


>gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo
           sapiens]
          Length = 1570

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 22/32 (68%), Positives = 26/32 (81%)

Query: 340 KRRGLTMLPRLVSNSWAQAVLPPRPPKVLEFQ 371
           KR+ LT+L RL+S+ WAQAVLPP PPKVL  Q
Sbjct: 457 KRQSLTVLTRLISSFWAQAVLPPWPPKVLGLQ 488


>gi|231571329 nitric oxide synthase 3 isoform 3 [Homo sapiens]
          Length = 614

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 21/29 (72%), Positives = 23/29 (79%)

Query: 340 KRRGLTMLPRLVSNSWAQAVLPPRPPKVL 368
           +R G  MLPRLVSNSW QA+  PRPPKVL
Sbjct: 584 ERWGFAMLPRLVSNSWVQAIHLPRPPKVL 612


>gi|194578909 eukaryotic translation initiation factor 4E isoform 2
           [Homo sapiens]
          Length = 248

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 21/32 (65%), Positives = 24/32 (75%)

Query: 341 RRGLTMLPRLVSNSWAQAVLPPRPPKVLEFQV 372
           R  L MLPRLVSN W Q +LP +PPKVLE Q+
Sbjct: 134 RWDLAMLPRLVSNFWPQVILPLQPPKVLELQL 165


>gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]
          Length = 226

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 20/26 (76%), Positives = 21/26 (80%)

Query: 346 MLPRLVSNSWAQAVLPPRPPKVLEFQ 371
           ML RLVSNSW Q +LPPRPPKVL  Q
Sbjct: 1   MLLRLVSNSWPQVILPPRPPKVLGLQ 26


>gi|8922785 hypothetical protein LOC55267 [Homo sapiens]
          Length = 138

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 37/109 (33%), Positives = 44/109 (40%), Gaps = 16/109 (14%)

Query: 278 TDPLDCFGKAIEIAKNQPPILNRLAKIFYFLGKQDMAIGTCNMALDVLRDPELNWQAYCT 337
           T P    G+     ++  P   R A  F+  G     +        VLR P L   A   
Sbjct: 32  TRPAPGPGRRARCPQSAHPAPTRGALTFWAPGSWPRVLLVPRSPGPVLRAPRLPHPA--A 89

Query: 338 RAKRR--------------GLTMLPRLVSNSWAQAVLPPRPPKVLEFQV 372
           RA+RR              G T    LVSNSWA A+  PRPP VLE QV
Sbjct: 90  RARRRAWHGARLPGSPARAGRTFQRGLVSNSWAHAIFLPRPPNVLELQV 138


>gi|239755282 PREDICTED: similar to Tripartite motif-containing
           protein 43-like protein 1 [Homo sapiens]
          Length = 185

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 19/32 (59%), Positives = 26/32 (81%)

Query: 340 KRRGLTMLPRLVSNSWAQAVLPPRPPKVLEFQ 371
           KR+GL MLPRLV +S  QA+L P+PPK L+++
Sbjct: 8   KRQGLIMLPRLVLDSLDQAILLPQPPKELDYK 39


>gi|239752570 PREDICTED: hypothetical protein XP_002348292 [Homo
           sapiens]
          Length = 185

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 19/32 (59%), Positives = 26/32 (81%)

Query: 340 KRRGLTMLPRLVSNSWAQAVLPPRPPKVLEFQ 371
           KR+GL MLPRLV +S  QA+L P+PPK L+++
Sbjct: 8   KRQGLIMLPRLVLDSLDQAILLPQPPKELDYK 39


>gi|170172518 microtubule associated monoxygenase, calponin and LIM
           domain containing 3 isoform 3 [Homo sapiens]
          Length = 966

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 347 LPRLVSNSWAQAVLPPRPPKVLEFQV 372
           LPR+VSNSWAQ + PP+PP VL  Q+
Sbjct: 941 LPRMVSNSWAQMIHPPQPPTVLGSQM 966


>gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens]
          Length = 236

 Score = 35.8 bits (81), Expect = 0.064
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 341 RRGLTMLPRLVSNSWAQAVLPPRPPKVLEFQV 372
           R+GL +L  LV NSW QA+LP  PP+  ++++
Sbjct: 33  RQGLAVLLMLVLNSWPQAILPSWPPREQDYRL 64


>gi|238908495 similar to pleckstrin homology domain protein (5V327)
           [Homo sapiens]
          Length = 506

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 39/173 (22%), Positives = 77/173 (44%), Gaps = 24/173 (13%)

Query: 44  RDLKLQREGLRQELQLAAA------PQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHP 97
           ++L++++E +++EL+L A        ++  +RHL  +    LEEL   ++  LE+  E+ 
Sbjct: 206 QELRMEQEQIKRELELTARCLKGVEQEKKELRHLTESLQQTLEELSIEKKKTLEMLEENE 265

Query: 98  GNLNAWANLAHVYGRLGQEEEEEACAARLADLMGLAEEPEAAGDPQLRAARCLAEQGYAH 157
            +L   AN         Q E+        ++L  + E+ +     QL   + LAE+    
Sbjct: 266 NHLQTLAN---------QSEQPPPSGGLHSNLRQIEEKMQ-----QLLEEKLLAEKRMKE 311

Query: 158 GFDVGCASPEERARGLAAGIALYDKALGYGQQIPMEEKRGWYFTMATLYIRLD 210
             +   A  EER    +   AL +      Q++  E+++      A + +R+D
Sbjct: 312 NEERSRALEEEREFYSSQSQALQNSL----QELTAEKQQAERELKAEVKVRMD 360


>gi|109255236 centrosomal protein 63 isoform d [Homo sapiens]
          Length = 475

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 340 KRRGLTMLPRLVSNSWAQAVLPPRPPKVLEFQV 372
           +R G TML  LV N   QA+  P+ PKVLE QV
Sbjct: 443 ERWGFTMLSSLVLNFGIQAIRQPQRPKVLELQV 475


>gi|66730423 hypothetical protein LOC389384 [Homo sapiens]
          Length = 652

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 106 LAHVYGRLGQEEEEEACAARLADLMGLAEEPE---AAGDPQLRAAR------CLAEQGYA 156
           + + + R G EE  E  + R     G+++ PE   AAG+P LR            +QG+ 
Sbjct: 103 MLNFFVRTGPEEPRERASRRPRGKEGISQHPEPLEAAGEPALRKKAHHDKKPSRKKQGHK 162

Query: 157 -HGFDVGCASPEERARGLAAGIALYDKALGYGQQIPMEEKRG 197
            H  +V  A+ ++ ARG   G++    AL  G+      +RG
Sbjct: 163 KHAAEVTKAAQDQEARGREEGLSKAAAALRSGEADLGPARRG 204


>gi|32307150 O-linked GlcNAc transferase isoform 2 [Homo sapiens]
          Length = 1036

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 18/53 (33%), Positives = 25/53 (47%)

Query: 63  PQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQ 115
           P    VR  LG     L  L+EA+ C+L+     P    AW+NL  V+   G+
Sbjct: 144 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 196


>gi|32307148 O-linked GlcNAc transferase isoform 1 [Homo sapiens]
          Length = 1046

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 18/53 (33%), Positives = 25/53 (47%)

Query: 63  PQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQ 115
           P    VR  LG     L  L+EA+ C+L+     P    AW+NL  V+   G+
Sbjct: 154 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 206


>gi|167466177 cell division cycle protein 27 isoform 1 [Homo
           sapiens]
          Length = 830

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 71  LLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVY 110
           LLG      EELD+A  CF      +P + NAW  L  +Y
Sbjct: 612 LLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIY 651



 Score = 32.0 bits (71), Expect = 0.92
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 18/102 (17%)

Query: 228 NRTLALLRQVLKSEDPRHRALAWCYLGMLLERKDTFSTTPMGVHDCGYSGTDPLDCFGKA 287
           ++ LA  R  ++  +PRH   AW  LGM+  +++ FS   M               F KA
Sbjct: 624 DKALACFRNAIRV-NPRHYN-AWYGLGMIYYKQEKFSLAEMH--------------FQKA 667

Query: 288 IEIAKNQPPILNRLAKIFYFLGKQDMAIGTCNMALDVLRDPE 329
           ++I      +L  +  + + L K + A+ T N A+ +  DP+
Sbjct: 668 LDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVI--DPK 707


>gi|167466175 cell division cycle protein 27 isoform 2 [Homo
           sapiens]
          Length = 824

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 71  LLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVY 110
           LLG      EELD+A  CF      +P + NAW  L  +Y
Sbjct: 606 LLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIY 645



 Score = 32.0 bits (71), Expect = 0.92
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 18/102 (17%)

Query: 228 NRTLALLRQVLKSEDPRHRALAWCYLGMLLERKDTFSTTPMGVHDCGYSGTDPLDCFGKA 287
           ++ LA  R  ++  +PRH   AW  LGM+  +++ FS   M               F KA
Sbjct: 618 DKALACFRNAIRV-NPRHYN-AWYGLGMIYYKQEKFSLAEMH--------------FQKA 661

Query: 288 IEIAKNQPPILNRLAKIFYFLGKQDMAIGTCNMALDVLRDPE 329
           ++I      +L  +  + + L K + A+ T N A+ +  DP+
Sbjct: 662 LDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVI--DPK 701


>gi|110227629 translin-associated factor X interacting protein 1
           [Homo sapiens]
          Length = 658

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 180 YDKALGYGQQIPMEEKRGWYFTMATLYIRLDGIFLELGSE--EQKRLPAFNRTLALLRQV 237
           Y K +G  QQ P    +  Y      Y+R + + L+LG++  ++ RL  +        + 
Sbjct: 28  YRKRVGSCQQHPFRTAKPQYLEELENYLRKELLLLDLGTDSTQELRLQPYREIFEFFIED 87

Query: 238 LKSEDPRHRALAWCYLGMLLERKD 261
            K+  P   ++   Y GML  +++
Sbjct: 88  FKTYKPLLSSIKNAYEGMLAHQRE 111


>gi|7662078 tetratricopeptide repeat domain 37 [Homo sapiens]
          Length = 1564

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 72  LGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVY 110
           +G  A  LE+ D+A+  + + A   P  L AW  LA++Y
Sbjct: 46  IGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLY 84


>gi|229577238 tetratricopeptide repeat domain 18 [Homo sapiens]
          Length = 1121

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)

Query: 72   LGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEE 120
            LG   + LEEL EA +   E    +  N   WA LA V  ++G++ E E
Sbjct: 1039 LGIACYRLEELTEAEDALSEANALNNYNAEVWAYLALVCLKVGRQLEAE 1087


>gi|222136634 tetratricopeptide repeat domain 26 isoform 1 [Homo
           sapiens]
          Length = 554

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 72  LGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEEA 121
           +G  AF+L +   A E +     E   N   W NLA  Y  LG  ++ EA
Sbjct: 63  IGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEA 112


>gi|222136605 tetratricopeptide repeat domain 26 isoform 2 [Homo
           sapiens]
          Length = 487

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 72  LGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVYGRLGQEEEEEA 121
           +G  AF+L +   A E +     E   N   W NLA  Y  LG  ++ EA
Sbjct: 63  IGYCAFHLGDYKRALEEYENATKEENCNSEVWVNLACTYFFLGMYKQAEA 112


>gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Homo
           sapiens]
          Length = 2378

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 9/141 (6%)

Query: 51  EGLRQELQLAAAPQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLNAWANLAHVY 110
           +G+  E+++       AV+ +           D A     EVA     N +A   +A+  
Sbjct: 237 QGVANEVEVQGVAHEDAVQGIANE--------DAAHGITNEVAAHGIANEDAAQGIANED 288

Query: 111 GRLGQEEEEEACAARLADLM-GLAEEPEAAGDPQLRAARCLAEQGYAHGFDVGCASPEER 169
              G   E+        D + G+A+E  A G     AA  +A+   AHG     A+    
Sbjct: 289 AAQGIAHEDAVQGIANEDAVHGVAKEVAAHGVANEDAAHAIAKPDAAHGIANEVATQGIA 348

Query: 170 ARGLAAGIALYDKALGYGQQI 190
              +A GIA  D A G  +++
Sbjct: 349 TEDVADGIANEDAAHGVAKEV 369


>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
          Length = 1170

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 23   GHFHLEMQLNFEPRSP--APQRARDLKLQREGLRQELQLAAAP 63
            G FH E Q    P+ P   PQ AR + L R GL+Q   L A P
Sbjct: 999  GFFHPEGQPQRLPQPPEVGPQPARKVTLTRGGLQQPPHLPAGP 1041


>gi|239751290 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 196

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 350 LVSNSWAQAVLPPRPPKVLEFQV 372
           LV NSW QA+LP  PP+  ++++
Sbjct: 2   LVLNSWPQAILPSWPPREQDYRL 24


>gi|111955162 5-azacytidine induced 1 isoform b [Homo sapiens]
          Length = 1044

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 52  GLRQELQLAAAPQRPAVRHLLGAFAFYLEELDE-ARECFLEVAHEHPGNLNAWANLAHVY 110
           GL  E+Q   A  +  VR L       L + DE A +  L  A E    L          
Sbjct: 707 GLEPEIQKLIARHKQEVRRLKSLHEAELLQSDERASQRCLRQAEELREQLEREKEA---- 762

Query: 111 GRLGQEEEEEACAARLADLMGLAEEPEAAGDPQLRAARCLAEQG 154
             LGQ+E E A   + A+L  L ++ E +     RA R   E+G
Sbjct: 763 --LGQQERERARQRQRAELEELRQQLEESSSALTRALRAEFEKG 804


>gi|27436948 lamin A/C isoform 3 [Homo sapiens]
          Length = 634

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 42  RARDLKLQREGLRQELQLAAAPQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLN 101
           R R L+ +  GLR  +      +    R + G  A Y  EL +AR+    VA E      
Sbjct: 48  RVRSLETENAGLRLRI---TESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQL 104

Query: 102 AWANLAHVYGRLGQEEEEE-----ACAARLADLMGLAEEPEAAGDPQLRAARCL 150
             + +   +  L     ++     A  ARL DL  L    EAA    L   R L
Sbjct: 105 ELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTL 158


>gi|5031875 lamin A/C isoform 2 [Homo sapiens]
          Length = 572

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 42  RARDLKLQREGLRQELQLAAAPQRPAVRHLLGAFAFYLEELDEARECFLEVAHEHPGNLN 101
           R R L+ +  GLR  +      +    R + G  A Y  EL +AR+    VA E      
Sbjct: 48  RVRSLETENAGLRLRI---TESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQL 104

Query: 102 AWANLAHVYGRLGQEEEEE-----ACAARLADLMGLAEEPEAAGDPQLRAARCL 150
             + +   +  L     ++     A  ARL DL  L    EAA    L   R L
Sbjct: 105 ELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTL 158


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,674,972
Number of Sequences: 37866
Number of extensions: 733315
Number of successful extensions: 1804
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1739
Number of HSP's gapped (non-prelim): 74
length of query: 372
length of database: 18,247,518
effective HSP length: 104
effective length of query: 268
effective length of database: 14,309,454
effective search space: 3834933672
effective search space used: 3834933672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.