Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131347 Sequence: fasta or formatted (196aa) NCBI GI: 239751290
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {175aa} PREDICTED: similar to hCG2007264
alt prot {236aa} PREDICTED: similar to RAD52 motif 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         16           2
 C cysteine            2.0          4           1
 D aspartate           4.1          8           1
 E glutamate           8.7         17           2
 F phenylalanine       3.1          6           1
 G glycine             8.7         17           2
 H histidine           3.6          7           1
 I isoleucine          1.5          3           1
 K lysine              4.1          8           2
 L leucine             8.7         17           2
 M methionine          2.0          4           2
 N asparagine          2.6          5           1
 P proline             6.6         13           2
 Q glutamine           7.1         14           1
 R arginine            7.1         14           2
 S serine              9.2         18           2
 T threonine           4.6          9           1
 V valine              5.6         11           2
 W tryptophan          2.0          4           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131347          1.000   PREDICTED: similar to RAD52 motif 1 
MYL10                 0.013   myosin, light chain 10, regulatory 
ZNF469                0.013   zinc finger protein 469 
EIF4E                 0.013   eukaryotic translation initiation factor 4E isoform...
TRIP6                 0.013   thyroid receptor-interacting protein 6 
COL5A3                0.011   collagen, type V, alpha 3 preproprotein 
TTC22                 0.011   tetratricopeptide repeat domain 22 isoform 2 
KDM5D                 0.011   jumonji, AT rich interactive domain 1D isoform 1 [H...
ACAD10                0.008   acyl-Coenzyme A dehydrogenase family, member 10 iso...
SLC39A12              0.008   solute carrier family 39 (zinc transporter), member...
LOC100294417          0.008   PREDICTED: hypothetical protein 
MBD3L3                0.008   PREDICTED: methyl-CpG-binding domain protein 3-like ...
LOC729458             0.008   PREDICTED: similar to methyl-CpG binding domain pro...
LOC728806             0.008   PREDICTED: similar to N-ethylmaleimide-sensitive fa...
LOC100294345          0.008   PREDICTED: similar to N-ethylmaleimide-sensitive fa...
MBD3L2                0.008   methyl-CpG binding domain protein 3-like 2 
LOC100292251          0.005   PREDICTED: similar to Tripartite motif-containing p...
LOC100290015          0.005   PREDICTED: hypothetical protein XP_002348292 
TEX15                 0.005   testis expressed 15 
MSL1                  0.005   hampin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press