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Search of human proteins with 153791502
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153791502 transmembrane and coiled-coil domains 7 [Homo
sapiens]
(1094 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153791502 transmembrane and coiled-coil domains 7 [Homo sapiens] 2138 0.0
gi|62460637 importin 4 [Homo sapiens] 43 0.002
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo... 38 0.046
gi|157502197 hypothetical protein LOC9772 [Homo sapiens] 38 0.046
gi|50086624 integrator complex subunit 4 [Homo sapiens] 35 0.30
gi|149274646 hypothetical protein LOC57710 [Homo sapiens] 35 0.39
gi|34482047 adaptor-related protein complex 3, beta 2 subunit [H... 34 0.66
gi|45439327 periplakin [Homo sapiens] 34 0.66
gi|38327039 heat shock 70kDa protein 4 [Homo sapiens] 33 1.5
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 33 1.5
gi|4826730 FK506 binding protein 12-rapamycin associated protein... 32 2.5
gi|110347429 mediator complex subunit 12 [Homo sapiens] 32 2.5
gi|110815815 centlein isoform 1 [Homo sapiens] 32 3.3
gi|12711676 UPF3 regulator of nonsense transcripts homolog A iso... 32 3.3
gi|18375525 UPF3 regulator of nonsense transcripts homolog A iso... 32 3.3
gi|56549696 E1A binding protein p400 [Homo sapiens] 32 4.3
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H... 31 5.6
gi|55749742 HEAT repeat containing 5B [Homo sapiens] 31 5.6
gi|187607364 tuftelin 1 isoform 2 [Homo sapiens] 31 5.6
gi|9910596 tuftelin 1 isoform 1 [Homo sapiens] 31 5.6
gi|62241003 cardiomyopathy associated 5 [Homo sapiens] 31 5.6
gi|42544159 heat shock 105kD [Homo sapiens] 31 7.3
gi|38044112 restin isoform b [Homo sapiens] 30 9.6
gi|4506751 restin isoform a [Homo sapiens] 30 9.6
gi|117553586 dedicator of cytokinesis 5 [Homo sapiens] 30 9.6
gi|31542650 MANSC domain containing 1 [Homo sapiens] 30 9.6
gi|210031219 zinc finger protein 845 [Homo sapiens] 30 9.6
>gi|153791502 transmembrane and coiled-coil domains 7 [Homo sapiens]
Length = 1094
Score = 2138 bits (5541), Expect = 0.0
Identities = 1094/1094 (100%), Positives = 1094/1094 (100%)
Query: 1 MAARQAVGSGAQETCGLDRILEALKLLLSPGGSGSSSLQVTKHDVLLATLKSNLSALEDK 60
MAARQAVGSGAQETCGLDRILEALKLLLSPGGSGSSSLQVTKHDVLLATLKSNLSALEDK
Sbjct: 1 MAARQAVGSGAQETCGLDRILEALKLLLSPGGSGSSSLQVTKHDVLLATLKSNLSALEDK 60
Query: 61 FLKDPQWKNLKLLRDEIADKAEWPQNSVDVTWSFTSQTLLLLLCLKETMIRLAANFNPGK 120
FLKDPQWKNLKLLRDEIADKAEWPQNSVDVTWSFTSQTLLLLLCLKETMIRLAANFNPGK
Sbjct: 61 FLKDPQWKNLKLLRDEIADKAEWPQNSVDVTWSFTSQTLLLLLCLKETMIRLAANFNPGK 120
Query: 121 PNPRTPEVAPALSPDALSISQQKTVQFVLQFVVTLGICPYLMPGVGVPLRYRTEFGAVVQ 180
PNPRTPEVAPALSPDALSISQQKTVQFVLQFVVTLGICPYLMPGVGVPLRYRTEFGAVVQ
Sbjct: 121 PNPRTPEVAPALSPDALSISQQKTVQFVLQFVVTLGICPYLMPGVGVPLRYRTEFGAVVQ 180
Query: 181 DVVCFDAAPDATRRLYTSCKALLNVAQHTSLGSLIFCHHFGDIAAGLCQLGFCPTKRKLL 240
DVVCFDAAPDATRRLYTSCKALLNVAQHTSLGSLIFCHHFGDIAAGLCQLGFCPTKRKLL
Sbjct: 181 DVVCFDAAPDATRRLYTSCKALLNVAQHTSLGSLIFCHHFGDIAAGLCQLGFCPTKRKLL 240
Query: 241 TPAEEVLTEEERTLSRGALRDMLDQVYQPLAVRELLILQGGPPQSCTDVKTQMRCRAPAW 300
TPAEEVLTEEERTLSRGALRDMLDQVYQPLAVRELLILQGGPPQSCTDVKTQMRCRAPAW
Sbjct: 241 TPAEEVLTEEERTLSRGALRDMLDQVYQPLAVRELLILQGGPPQSCTDVKTQMRCRAPAW 300
Query: 301 LRRLCGQLLSERLMRPNGVQAVVRGILEGAGAGAAGGSDAEVTAADWKKCDLIAKILASC 360
LRRLCGQLLSERLMRPNGVQAVVRGILEGAGAGAAGGSDAEVTAADWKKCDLIAKILASC
Sbjct: 301 LRRLCGQLLSERLMRPNGVQAVVRGILEGAGAGAAGGSDAEVTAADWKKCDLIAKILASC 360
Query: 361 PQQSLSPENYYRDICPQVLDLFHFQDKLTARQFQRVATTTFITLSRERPHLAAKYLLQPV 420
PQQSLSPENYYRDICPQVLDLFHFQDKLTARQFQRVATTTFITLSRERPHLAAKYLLQPV
Sbjct: 361 PQQSLSPENYYRDICPQVLDLFHFQDKLTARQFQRVATTTFITLSRERPHLAAKYLLQPV 420
Query: 421 LAPLHRCLNTAELSESDMVPGTILVTEEELSRCIEDVFKVYVVGNEPLTVLMDSLLPVLG 480
LAPLHRCLNTAELSESDMVPGTILVTEEELSRCIEDVFKVYVVGNEPLTVLMDSLLPVLG
Sbjct: 421 LAPLHRCLNTAELSESDMVPGTILVTEEELSRCIEDVFKVYVVGNEPLTVLMDSLLPVLG 480
Query: 481 VLFLLYCFTKQSVSHIRSLCQEILLWILGKLERKKAIASLKGFAGLDKAVPSLHSLCQFR 540
VLFLLYCFTKQSVSHIRSLCQEILLWILGKLERKKAIASLKGFAGLDKAVPSLHSLCQFR
Sbjct: 481 VLFLLYCFTKQSVSHIRSLCQEILLWILGKLERKKAIASLKGFAGLDKAVPSLHSLCQFR 540
Query: 541 VATQGGIMITIKEAISDEDEDEALYQKVSSEQGRVEHLGDLLSHCQECGLAGDFFIFCLK 600
VATQGGIMITIKEAISDEDEDEALYQKVSSEQGRVEHLGDLLSHCQECGLAGDFFIFCLK
Sbjct: 541 VATQGGIMITIKEAISDEDEDEALYQKVSSEQGRVEHLGDLLSHCQECGLAGDFFIFCLK 600
Query: 601 ELTHVASENETELKTEPFSSKSLLELEQHQTLLVEGQERKLLVLQLMAVLCERMSEQIFT 660
ELTHVASENETELKTEPFSSKSLLELEQHQTLLVEGQERKLLVLQLMAVLCERMSEQIFT
Sbjct: 601 ELTHVASENETELKTEPFSSKSLLELEQHQTLLVEGQERKLLVLQLMAVLCERMSEQIFT 660
Query: 661 NVTQVVDFVAATLQRACASLAHQAESTVESQTLSMSMGLVAVMLGGAVQLKSSDFAVLKQ 720
NVTQVVDFVAATLQRACASLAHQAESTVESQTLSMSMGLVAVMLGGAVQLKSSDFAVLKQ
Sbjct: 661 NVTQVVDFVAATLQRACASLAHQAESTVESQTLSMSMGLVAVMLGGAVQLKSSDFAVLKQ 720
Query: 721 LLPLLEKVSNTYPDPVIQELAVDLRITISTHGAFATEAVSMAAQSTLNRKDLEGKIEEQQ 780
LLPLLEKVSNTYPDPVIQELAVDLRITISTHGAFATEAVSMAAQSTLNRKDLEGKIEEQQ
Sbjct: 721 LLPLLEKVSNTYPDPVIQELAVDLRITISTHGAFATEAVSMAAQSTLNRKDLEGKIEEQQ 780
Query: 781 QTSHERPTDVAHSHLEQQQSHETAPQTGLQSNAPIIPQGVNEPSTTTSQKSGSVTTEQLQ 840
QTSHERPTDVAHSHLEQQQSHETAPQTGLQSNAPIIPQGVNEPSTTTSQKSGSVTTEQLQ
Sbjct: 781 QTSHERPTDVAHSHLEQQQSHETAPQTGLQSNAPIIPQGVNEPSTTTSQKSGSVTTEQLQ 840
Query: 841 EVLLSAYDPQIPTRAAALRTLSHWIEQREAKALEMQEKLLKIFLENLEHEDTFVYLSAIQ 900
EVLLSAYDPQIPTRAAALRTLSHWIEQREAKALEMQEKLLKIFLENLEHEDTFVYLSAIQ
Sbjct: 841 EVLLSAYDPQIPTRAAALRTLSHWIEQREAKALEMQEKLLKIFLENLEHEDTFVYLSAIQ 900
Query: 901 GVALLSDVYPEKILPDLLAQYDSSKDKHTPETRMKVGEVLMRIVRALGDMVSKYREPLIH 960
GVALLSDVYPEKILPDLLAQYDSSKDKHTPETRMKVGEVLMRIVRALGDMVSKYREPLIH
Sbjct: 901 GVALLSDVYPEKILPDLLAQYDSSKDKHTPETRMKVGEVLMRIVRALGDMVSKYREPLIH 960
Query: 961 TFLRGVRDPDGAHRASSLANLGELCQRLDFLLGSVVHEVTACLIAVAKTDGEVQVRRAAI 1020
TFLRGVRDPDGAHRASSLANLGELCQRLDFLLGSVVHEVTACLIAVAKTDGEVQVRRAAI
Sbjct: 961 TFLRGVRDPDGAHRASSLANLGELCQRLDFLLGSVVHEVTACLIAVAKTDGEVQVRRAAI 1020
Query: 1021 HVVVLLLRGLSQKATEVLSAVLKDLYHLLKHVVCLEPDDVAKLHAQLALEELDDIMKNFL 1080
HVVVLLLRGLSQKATEVLSAVLKDLYHLLKHVVCLEPDDVAKLHAQLALEELDDIMKNFL
Sbjct: 1021 HVVVLLLRGLSQKATEVLSAVLKDLYHLLKHVVCLEPDDVAKLHAQLALEELDDIMKNFL 1080
Query: 1081 FPPQKLEKKIMVLP 1094
FPPQKLEKKIMVLP
Sbjct: 1081 FPPQKLEKKIMVLP 1094
>gi|62460637 importin 4 [Homo sapiens]
Length = 1081
Score = 42.7 bits (99), Expect = 0.002
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 4/158 (2%)
Query: 898 AIQGVALLS-DVYPEKILPDLLAQYDSSKDKHTPETRMKVGEVLMRIVRALGDMV-SKYR 955
A+Q V +L+ + PEK+ P L+ + + +P R VL + GD + +
Sbjct: 333 AVQVVDMLALHLPPEKLCPQLMPMLEEALRSESPYQRKAGLLVLAVLSDGAGDHIRQRLL 392
Query: 956 EPLIHTFLRGVRDPDGAHRASSLANLGELCQRLDFLLGSVVHEVTACLIAVAKTD--GEV 1013
PL+ +G+ DP R ++L LG+ + L + S EV L+A K+ G
Sbjct: 393 PPLLQIVCKGLEDPSQVVRNAALFALGQFSENLQPHISSYSREVMPLLLAYLKSVPLGHT 452
Query: 1014 QVRRAAIHVVVLLLRGLSQKATEVLSAVLKDLYHLLKH 1051
A + + + L K L +++ + LL++
Sbjct: 453 HHLAKACYALENFVENLGPKVQPYLPELMECMLQLLRN 490
>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
sapiens]
Length = 2168
Score = 38.1 bits (87), Expect = 0.046
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 28/227 (12%)
Query: 686 STVESQTLSMSMGLVAVMLGGAVQLKSSDFAVLKQLLPL-LEKVSNTYPDPVIQELAVDL 744
++V S T S SMG G K + Q L ++K+ + P E + +
Sbjct: 186 TSVLSTTASSSMGQTKSTSSGGGNRKCNQEQSKNQPLDARVDKIKDKKPRKKAMESSSNS 245
Query: 745 RITISTHGAFATEAVSMAAQSTLNRKDLEGKIEEQQQTSHERPTDVAHSHLEQQQSHETA 804
T ++E +S + + DLE EE+ Q+ E D + S E Q
Sbjct: 246 DSDSGTSSDTSSEGISSS-----DSDDLEEDEEEEDQSIEESEDDDSDSESEAQH----- 295
Query: 805 PQTGLQSNAPIIPQGVNEPSTTTSQKSGSVTTEQLQEVLLSAYDPQIPTRAAALRTLSHW 864
+SN ++ G+++P + G TE+ QE + P A + +H
Sbjct: 296 -----KSNNQVLLHGISDP-----KADGQKATEKAQEKRIHQPLP------LASESQTHS 339
Query: 865 IEQREAKALEMQEKLLKIFLENLEHEDTF-VYLSAIQGVALLSDVYP 910
+ ++ + + ++L IF + E++ + S IQ L+S+V P
Sbjct: 340 FQSQQKQPQVLSQQLPFIFQSSQAKEESVNKHTSVIQSTGLVSNVKP 386
>gi|157502197 hypothetical protein LOC9772 [Homo sapiens]
Length = 1356
Score = 38.1 bits (87), Expect = 0.046
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 431 AELSESDMVPGTILVTEEELSRCIEDVFKVYVVGNEPLTVLMDSLLPVLGVLFLLYCFTK 490
A+ SE + T V+ +E+ RCI F + G P SLL LG + +L C K
Sbjct: 359 AKFSEDTLSSYTEAVSSQEMLRCIWGHFLRVLGGTSPTLSHSSSLLHSLGSVTVLCCVDK 418
Query: 491 QSVSHIRSLCQEILLWILGKLE 512
Q + + E +L+ GK+E
Sbjct: 419 QGILSWPNPSPETVLFFSGKVE 440
>gi|50086624 integrator complex subunit 4 [Homo sapiens]
Length = 963
Score = 35.4 bits (80), Expect = 0.30
Identities = 50/236 (21%), Positives = 103/236 (43%), Gaps = 30/236 (12%)
Query: 684 AESTVESQTLSMSMGLVAVMLGGAVQLKSSDFAV---LKQLLPLLEKVSNTYPDPVIQEL 740
A VE++++ G+V ++L K +D +V + LL LL K + PD ++ +
Sbjct: 60 ARKPVEAESVE---GVVRILLEH--YYKENDPSVRLKIASLLGLLSKTAGFSPDCIMDD- 113
Query: 741 AVDLRITISTHGAFATEAVSMAAQSTLNRKDLEGKIEEQQQTSHERPTDVAHSHLEQQQS 800
A+++ +H A ++ A T K+ E Q R DVA HL
Sbjct: 114 AINILQNEKSHQVLAQLLDTLLAIGT--------KLPENQAIQM-RLVDVACKHL----- 159
Query: 801 HETAPQTGLQSNAPIIPQGVNEPSTTTSQKSGSVTTEQLQEVLLSAYDPQIP-TRAAALR 859
T G+++ + + + ++ + + +Q+++ + Q P R AA++
Sbjct: 160 --TDTSHGVRNKCLQLLGNLGSLEKSVTKDAEGLAARDVQKIIGDYFSDQDPRVRTAAIK 217
Query: 860 TLSHWIEQREAKALEMQEKLLKIFLENLEHEDTFVYLSAIQGVALLSDVYPEKILP 915
+ Q + L++ + + + L + V +A+Q + ++S +YPE I+P
Sbjct: 218 AML----QLHERGLKLHQTIYNQACKLLSDDYEQVRSAAVQLIWVVSQLYPESIVP 269
>gi|149274646 hypothetical protein LOC57710 [Homo sapiens]
Length = 1190
Score = 35.0 bits (79), Expect = 0.39
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 777 EEQQQTSHERPTDVAHSHLEQQQSHETAPQTGLQSNAPIIPQGVNEPSTTTSQKSGSVTT 836
+ Q SHE V+ S L+Q + +AP Q A + P+G P+ S+K+ S +
Sbjct: 763 QAQVTESHESLEIVSPSSLQQSHAEPSAPHQAWQPTASLCPEGW-APTPPPSRKTTSPVS 821
Query: 837 EQLQEV--LLSAYD-------PQIPTRAAALRTLSHWIEQREAKALEMQEKLLKIFLEN 886
+ + LL D P+ P+R+A LRT Q + +++ LL + N
Sbjct: 822 HRKAALAGLLRLGDQTEPVGIPRPPSRSAVLRTCELPPSQTQPSRPQVRHPLLALSTNN 880
>gi|34482047 adaptor-related protein complex 3, beta 2 subunit [Homo
sapiens]
Length = 1082
Score = 34.3 bits (77), Expect = 0.66
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 959 IHTFLRGVRDPDGAHRASSLANLGELCQRLDFLLGSVVHEVTACLIAVAKTDGEVQVRRA 1018
I TF RG++DP+ RAS+L + L + ++ + I A +D VR+
Sbjct: 112 ISTFQRGLKDPNQLIRASAL-------RVLSSIRVPIIVPIMMLAIKEAASDMSPYVRKT 164
Query: 1019 AIHVVVLLLRGLSQKATEVLSAVLKDLYHLLKHVVCLEPDDVAKLHAQLALEELDDIMKN 1078
A H + L S + +++ + K LL L V ++ E +D I KN
Sbjct: 165 AAHAIPKLYSLDSDQKDQLIEVIEK----LLADKTTLVAGSVVMAFEEVCPERIDLIHKN 220
Query: 1079 F 1079
+
Sbjct: 221 Y 221
>gi|45439327 periplakin [Homo sapiens]
Length = 1756
Score = 34.3 bits (77), Expect = 0.66
Identities = 69/297 (23%), Positives = 114/297 (38%), Gaps = 30/297 (10%)
Query: 605 VASENETELKTEPFSSKSLLELEQHQTLLVEGQERKLLVLQ--LMAVLCERMSEQIFTNV 662
V +N+ +L+ E + L E Q Q L E QE +L LQ L + ER + V
Sbjct: 1058 VKLQNDPQLEAE---YQQLQEDHQRQDQLREKQEEELSFLQDKLKRLEKERAMAEGKITV 1114
Query: 663 TQV--VDFVAATLQRACASLAHQAESTVESQTLSMSMGLVAVMLGGAVQLKSSDFAVLKQ 720
+V V+ AAT +R + L Q E S + A++ +++ V ++
Sbjct: 1115 KEVLKVEKDAAT-EREVSDLTRQYEDEAAKARASQREKTELLRKIWALEEENAKVVVQEK 1173
Query: 721 LLPLLEKVSNTYPDPVIQELAVDLRITI-----STHGAFATEAVSMAAQSTLNRKDLEGK 775
+ ++ PDP + +LR+ + GA + L R+ + +
Sbjct: 1174 VREIVR------PDPKAESEVANLRLELVEQERKYRGAEEQLRSYQSELEALRRRGPQVE 1227
Query: 776 IEEQQQTSHERPTDVAHSHLEQQQSHETAPQTGLQSNAPI-IPQGVNEPSTTTSQKSGSV 834
++E + + TD Q+ E +T L + I Q E K
Sbjct: 1228 VKEVTKEVIKYKTDPEMEKELQRLREEIVDKTRLIERCDLEIYQLKKEIQALKDTKPQVQ 1287
Query: 835 TTEQLQEVLLSAYDPQIPTRAAALRTLSHWIEQREAKALEMQEKLLKIFLENLEHED 891
T E +QE+L DPQ A+LR AK E Q+K + + E E+
Sbjct: 1288 TKEVVQEILQFQEDPQTKEEVASLR----------AKLSEEQKKQVDLERERASQEE 1334
>gi|38327039 heat shock 70kDa protein 4 [Homo sapiens]
Length = 840
Score = 33.1 bits (74), Expect = 1.5
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 26/93 (27%)
Query: 732 YPDPVIQELAVD--------------LRITISTHGAFATEAVSMAA--QSTLNRKDLE-- 773
YPDP I + +V +++ ++ HG F+ + S+ +S N + +E
Sbjct: 454 YPDPAIAQFSVQKVTPQSDGSSSKVKVKVRVNVHGIFSVSSASLVEVHKSEENEEPMETD 513
Query: 774 --GKIEEQQQTSHERPTDVAHSHLEQQQSHETA 804
K EE+ Q E P H+E+QQ A
Sbjct: 514 QNAKEEEKMQVDQEEP------HVEEQQQQTPA 540
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 33.1 bits (74), Expect = 1.5
Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 7/229 (3%)
Query: 572 QGRVEHLGDLLSHCQECGLAGDFFIFCLKELTHVASENETELKTEPFSSKSLLELEQHQT 631
+ +VE+L D L+ QE ++ LKE E + ++ E S + +
Sbjct: 582 EDKVENLVDQLNKSQESNVSIQKENLELKEHIRQNEEELSRIRNELMQSLNQDSNSNFKD 641
Query: 632 LLVEGQERKLLVLQLMAVLCERMSEQIFTNVTQVVDFVAATLQRACASLAHQAESTVESQ 691
L++ +E ++ L+ E+++E + V V L AC + HQ E +
Sbjct: 642 TLLKEREAEVRNLKQNLSELEQLNENL-KKVAFDVKMENEKLVLACEDVRHQLEECLAGN 700
Query: 692 T-LSMSMGLVAVMLGGAVQLKSSDFAVLKQLLPLLEKVSNTYPDPVIQELAVDLRITIST 750
LS+ + L ++ K+ L LE+ +N Y + I+EL+ + S
Sbjct: 701 NQLSLEKNTIVETLKMEKGEIEAELCWAKKRL--LEE-ANKY-EKTIEELSNARNLNTSA 756
Query: 751 HGAFATEAVSMAAQSTLNRKDLEGKIEEQQQTSHERPTDVAHSHLEQQQ 799
+ + + + +L+ IE Q T H+ DV S LE+Q+
Sbjct: 757 LQLEHEHLIKLNQKKDMEIAELKKNIE-QMDTDHKETKDVLSSSLEEQK 804
>gi|4826730 FK506 binding protein 12-rapamycin associated protein 1
[Homo sapiens]
Length = 2549
Score = 32.3 bits (72), Expect = 2.5
Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 20/205 (9%)
Query: 828 SQKSGSVTTEQLQEVLLSAY-DPQIPTRAAALRTLSHWIEQREAKALEMQEKLLKIFLEN 886
SQ + V + L ++L+ DP R L +L + A+A +Q + + +
Sbjct: 645 SQTAVQVVADVLSKLLVVGITDPDPDIRYCVLASLDERFDAHLAQAENLQALFVALNDQV 704
Query: 887 LEHEDTFVYLSAIQGVALLSDVYPEKILPDLLAQYDSSKDKHTPETRMKVGEVLMRIVRA 946
E + AI V LS + P ++P L T +G + + R
Sbjct: 705 FEIREL-----AICTVGRLSSMNPAFVMPFLRKMLIQIL---TELEHSGIGRIKEQSARM 756
Query: 947 LGDMVSK-------YREPLIHTFLRGVRDPDGAHRA----SSLANLGELCQRLDFLLGSV 995
LG +VS Y EP++ + ++DPD + LA +GEL Q +
Sbjct: 757 LGHLVSNAPRLIRPYMEPILKALILKLKDPDPDPNPGVINNVLATIGELAQVSGLEMRKW 816
Query: 996 VHEVTACLIAVAKTDGEVQVRRAAI 1020
V E+ ++ + + + R+ A+
Sbjct: 817 VDELFIIIMDMLQDSSLLAKRQVAL 841
>gi|110347429 mediator complex subunit 12 [Homo sapiens]
Length = 2177
Score = 32.3 bits (72), Expect = 2.5
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 777 EEQQQTSHERPTDVAHSHLEQQQSHETAPQTGLQSNAPIIPQGVNEPSTTTSQKSGSVTT 836
++QQQ ++ H +QQQ PQ QS QG+ + T Q+ +
Sbjct: 2099 QQQQQQQQQQQQQQQQQHQQQQQQQAAPPQPQPQSQPQFQRQGLQQ---TQQQQQTAALV 2155
Query: 837 EQLQEVLLSAYDPQIPT 853
QLQ+ LS PQ T
Sbjct: 2156 RQLQQ-QLSNTQPQPST 2171
>gi|110815815 centlein isoform 1 [Homo sapiens]
Length = 1406
Score = 32.0 bits (71), Expect = 3.3
Identities = 37/194 (19%), Positives = 73/194 (37%), Gaps = 32/194 (16%)
Query: 510 KLERKKAIASLKGFA----GLDKAVPSLHSLCQFRVATQGGIMITIKEAISDEDEDEALY 565
K +K + S K F+ LDK V +L C + + + + A+ ++ + E +Y
Sbjct: 1154 KFRQKVNLESNKSFSEMLQNLDKKVKTLTEECSNKKVSIDSLKQRLNVAVKEKSQYEQMY 1213
Query: 566 QKVSSEQGRVEHLGDLLSHCQECGLAGDFFIFCLKELTHVASENETELKTEPFSSKSLLE 625
QK E + + LL ++ ++ + E +SK L E
Sbjct: 1214 QKSKEELEKKDLKLTLL-------------------VSRISETESAMAEIETAASKQLQE 1254
Query: 626 LEQHQTLLVEGQERKLLVLQ--------LMAVLCERMSEQIFTNVTQVVDFVAATLQR-A 676
L ++EG ++ LL+ + L + + + Q+ + R A
Sbjct: 1255 LALQSEQVLEGAQKTLLLANEKVEEFTTFVKALAKELQNDVHVVRRQIRELKKMKKNRDA 1314
Query: 677 CASLAHQAESTVES 690
C + H+A++ S
Sbjct: 1315 CKTSTHKAQTLAAS 1328
>gi|12711676 UPF3 regulator of nonsense transcripts homolog A
isoform hUpf3p [Homo sapiens]
Length = 476
Score = 32.0 bits (71), Expect = 3.3
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 760 SMAAQSTLNRKDLEGKIEEQQQTSHERPTDVAHSHLEQQQSHETAPQ 806
S A + + + +EG +EE Q+TSH +D H +E+ Q E+ Q
Sbjct: 314 SCAPGAVVKARPMEGSLEEPQETSHS-GSDKEHRDVERSQEQESEAQ 359
>gi|18375525 UPF3 regulator of nonsense transcripts homolog A
isoform hUpf3pdelta [Homo sapiens]
Length = 443
Score = 32.0 bits (71), Expect = 3.3
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 760 SMAAQSTLNRKDLEGKIEEQQQTSHERPTDVAHSHLEQQQSHETAPQ 806
S A + + + +EG +EE Q+TSH +D H +E+ Q E+ Q
Sbjct: 281 SCAPGAVVKARPMEGSLEEPQETSHS-GSDKEHRDVERSQEQESEAQ 326
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 31.6 bits (70), Expect = 4.3
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 787 PTDVAHSHLEQQQSHETAPQTGLQSNAPIIPQGVNEPSTTTSQKSGSVTTEQLQEVLLSA 846
P + S + S T+ G+ ++AP PQ + +T++ S TEQ+
Sbjct: 686 PVNRPSSATNKALSPVTSRTPGVVASAPTKPQSPAQNATSSQDSSQDTLTEQI------T 739
Query: 847 YDPQIPTRAAALRTLSHWIEQREAKALE 874
+ Q+ R A LR W ++R K E
Sbjct: 740 LENQVHQRIAELRKAGLWSQRRLPKLQE 767
>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
sapiens]
Length = 1094
Score = 31.2 bits (69), Expect = 5.6
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 959 IHTFLRGVRDPDGAHRASSLANLGELCQRLDFLLGSVVHEVTACLIAVAKTDGEVQVRRA 1018
I TF R ++DP+ RAS+L + L + ++ + I A D VR+
Sbjct: 117 ISTFQRALKDPNQLIRASAL-------RVLSSIRVPIIVPIMMLAIKEASADLSPYVRKN 169
Query: 1019 AIHVVVLLLRGLSQKATEVLSAVLKDLYHLLKHVVCLEPDDVAKLHAQLALEELDDIMKN 1078
A H + L L + E+L V++ LLK L V ++ + +D I KN
Sbjct: 170 AAHAIQKLY-SLDPEQKEMLIEVIE---KLLKDKSTLVAGSVVMAFEEVCPDRIDLIHKN 225
Query: 1079 F 1079
+
Sbjct: 226 Y 226
>gi|55749742 HEAT repeat containing 5B [Homo sapiens]
Length = 2071
Score = 31.2 bits (69), Expect = 5.6
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 15/174 (8%)
Query: 858 LRTLSHWIE-QREAKALEMQEKLLKIFLENLEHEDTFVYLSAIQGVAL-LSDVYPEKILP 915
L+ L H+ E ++AK + Q L IF LSA++G+A S + PE++
Sbjct: 801 LQMLDHFAECVKQAKGVRQQAVQLNIFT---------AVLSALKGLAENKSTLGPEEVRK 851
Query: 916 DLLAQYDSSKDKHTPETRMKVGEVLMRIVRALGDMVSKYREPLIHTFLRGVRDPDGAHRA 975
L D P R GE L R+ + +G+ R ++F + D R
Sbjct: 852 SALTLVMGPLDNPNPILRCAAGEALGRMAQVVGEATFIARMAQ-YSFDKLKSARDVVSRT 910
Query: 976 SSLANLGELCQRLDFLLGSVVHEVT--ACLIAVAKTDGEVQVRRAAIHVVVLLL 1027
LG L R +GS H T + L+A+A+ +V+ ++H + L++
Sbjct: 911 GHSLALGCL-HRYVGGIGSGQHLKTSVSILLALAQDGTSPEVQTWSLHSLALIV 963
>gi|187607364 tuftelin 1 isoform 2 [Homo sapiens]
Length = 365
Score = 31.2 bits (69), Expect = 5.6
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 769 RKDLEGKIEEQQQTS-HERPTDVAHSHLEQQQSHETAPQTGLQSNAPIIPQGVNEPSTTT 827
R+D+ K++ S H + V LE+ +P T L S+ P + +NE +
Sbjct: 92 REDISSKLDRNLGDSLHRQEIQVV---LEKPNGFSQSP-TALYSSPPEVDTCINE-DVES 146
Query: 828 SQKSGSVTTEQLQE-------------VLLSAYDPQIPTRAAALRTLSHWIEQREAKALE 874
+K+ +LQE V LS Y + AL+ +EQ+EA+ E
Sbjct: 147 LRKTVQDLLAKLQEAKRQHQSDCVAFEVTLSRYQREAEQSNVALQREEDRVEQKEAEVGE 206
Query: 875 MQEKLLKIFLEN 886
+Q +LL + E+
Sbjct: 207 LQRRLLGMETEH 218
>gi|9910596 tuftelin 1 isoform 1 [Homo sapiens]
Length = 390
Score = 31.2 bits (69), Expect = 5.6
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 769 RKDLEGKIEEQQQTS-HERPTDVAHSHLEQQQSHETAPQTGLQSNAPIIPQGVNEPSTTT 827
R+D+ K++ S H + V LE+ +P T L S+ P + +NE +
Sbjct: 117 REDISSKLDRNLGDSLHRQEIQVV---LEKPNGFSQSP-TALYSSPPEVDTCINE-DVES 171
Query: 828 SQKSGSVTTEQLQE-------------VLLSAYDPQIPTRAAALRTLSHWIEQREAKALE 874
+K+ +LQE V LS Y + AL+ +EQ+EA+ E
Sbjct: 172 LRKTVQDLLAKLQEAKRQHQSDCVAFEVTLSRYQREAEQSNVALQREEDRVEQKEAEVGE 231
Query: 875 MQEKLLKIFLEN 886
+Q +LL + E+
Sbjct: 232 LQRRLLGMETEH 243
>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
Length = 4069
Score = 31.2 bits (69), Expect = 5.6
Identities = 55/275 (20%), Positives = 106/275 (38%), Gaps = 29/275 (10%)
Query: 604 HVA-SENETELKTEPFSSKSLLELEQHQTLL-VEGQERKLLVLQLMAVLCERMSEQIFTN 661
H+A SE E E+K + S S + +H L VE +E K + + + +
Sbjct: 1433 HLAWSEAEKEIKFDSLPSVS--SIAEHSVLSEVEAKEVKAGLPVIKTSSSQHSDKSEEAR 1490
Query: 662 VTQVVDFVAATLQRACASLAHQAESTVESQTLSMSMGLVAVMLGGAVQLKSSDFA----- 716
V D + +T+ + ++ Q +S + + + + + L G ++ K ++
Sbjct: 1491 VEDKQDLLFSTVCDSERLVSSQKKSLMSTSEVLEPEHELPLSLWGEIKKKETELPSSQNV 1550
Query: 717 --VLKQLLPLLEKVSNTYPDPVIQELAVDLRITISTHGAFATEAVSMAAQSTLNRKDLEG 774
K ++P + P ++ LA L T+ + N+ +E
Sbjct: 1551 SPASKHIIPKGKDEETASSSPELENLASGLAPTL------------LLLSDDKNKPAVEV 1598
Query: 775 KIEEQQQTSHERPTDVAHSHLEQQQSHETAPQTGLQSNAPIIPQGVNEPSTTTSQKSGSV 834
Q E+ DVA + L + + P L+ +P +E S+ ++SGS+
Sbjct: 1599 SSTAQGDFPSEKQ-DVALAELSLEPEKKDKPHQPLE-----LPNAGSEFSSDLGRQSGSI 1652
Query: 835 TTEQLQEVLLSAYDPQIPTRAAALRTLSHWIEQRE 869
T+Q + + D + A LR+ E RE
Sbjct: 1653 GTKQAKSPITETEDSVLEKGPAELRSREGKEENRE 1687
>gi|42544159 heat shock 105kD [Homo sapiens]
Length = 858
Score = 30.8 bits (68), Expect = 7.3
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 742 VDLRITISTHGAFATEAVSMAAQSTLNRKDLEGKIEEQQQTSHERPTDVAHSHLE-QQQS 800
V +++ ++THG F SM + ++ E + ++RP + + QQ +
Sbjct: 478 VKVKVRVNTHGIFTISTASMVEKVPTEENEMSS--EADMECLNQRPPENPDTDKNVQQDN 535
Query: 801 HETAPQTGLQSNAPIIPQGVNEPSTTTSQ 829
E Q +Q++A Q P T+ +
Sbjct: 536 SEAGTQPQVQTDAQQTSQSPPSPELTSEE 564
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 30.4 bits (67), Expect = 9.6
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 41 TKHDVLLATLKSNLSALEDKFLKDPQWKNLKLLRD-----EIADKAEWPQNSVDVTWSF- 94
TKH+ +L L+ L EDK LK + +N LL++ + ADKA+ Q + D
Sbjct: 992 TKHEEILQNLQKTLLDTEDK-LKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIME 1050
Query: 95 -----TSQTLLLLLCLKETMIRLAANFNPGKPNPRTPEVAPALSPDALSISQQKTVQF 147
++TL L K+T +L + K N S + L++ QK +F
Sbjct: 1051 QMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEF 1108
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 30.4 bits (67), Expect = 9.6
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 41 TKHDVLLATLKSNLSALEDKFLKDPQWKNLKLLRD-----EIADKAEWPQNSVDVTWSF- 94
TKH+ +L L+ L EDK LK + +N LL++ + ADKA+ Q + D
Sbjct: 1027 TKHEEILQNLQKTLLDTEDK-LKGAREENSGLLQELEELRKQADKAKAAQTAEDAMQIME 1085
Query: 95 -----TSQTLLLLLCLKETMIRLAANFNPGKPNPRTPEVAPALSPDALSISQQKTVQF 147
++TL L K+T +L + K N S + L++ QK +F
Sbjct: 1086 QMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEEF 1143
>gi|117553586 dedicator of cytokinesis 5 [Homo sapiens]
Length = 1870
Score = 30.4 bits (67), Expect = 9.6
Identities = 28/146 (19%), Positives = 60/146 (41%), Gaps = 11/146 (7%)
Query: 337 GSDAEVTAADWKKCDLIAKILASCPQQSLSPE-----NYYRDICPQVLDLFHFQDKLTAR 391
G D + + + +C + +++ P P NYYR ++ F+ R
Sbjct: 1415 GEDIKSSPKQYMQCFTVKPVMSLPPSYKDKPVPEQILNYYR-----ANEVQQFRYSRPFR 1469
Query: 392 QFQRVATTTFITLSRERPHLAAKYLLQPVLAPLH-RCLNTAELSESDMVPGTILVTEEEL 450
+ ++ F T+ ER Y +L + ++T E+S + T+ +T E +
Sbjct: 1470 KGEKDPDNEFATMWIERTTYTTAYTFPGILKWFEVKQISTEEISPLENAIETMELTNERI 1529
Query: 451 SRCIEDVFKVYVVGNEPLTVLMDSLL 476
S C++ + PL++L+ ++
Sbjct: 1530 SNCVQQHAWDRSLSVHPLSMLLSGIV 1555
>gi|31542650 MANSC domain containing 1 [Homo sapiens]
Length = 431
Score = 30.4 bits (67), Expect = 9.6
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 775 KIEEQQQTSHERPTDVAH--SHLEQQQSHETA----PQTGLQSNAPIIPQGVNEPSTTTS 828
+ Q+ +H P +V+ + + H T+ P T L +NA + P G ++P T+
Sbjct: 208 QFSSDQEIAHLLPENVSALPATVAVASPHTTSATPKPATLLPTNASVTPSGTSQPQLATT 267
Query: 829 QKSGSVTTEQLQEVLLSAYDPQIPTRAAA 857
+ T Q L+S + TRAAA
Sbjct: 268 APPVTTVTSQPPTTLIST----VFTRAAA 292
>gi|210031219 zinc finger protein 845 [Homo sapiens]
Length = 970
Score = 30.4 bits (67), Expect = 9.6
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 558 EDEDEALYQKVSSEQGRVEHLGDLLSHCQECG 589
E+ DEA K + E+ R+ H G+ L C ECG
Sbjct: 498 EECDEAFSFKSNLERHRIIHTGEKLYKCNECG 529
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,739,557
Number of Sequences: 37866
Number of extensions: 1734349
Number of successful extensions: 7098
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 7059
Number of HSP's gapped (non-prelim): 64
length of query: 1094
length of database: 18,247,518
effective HSP length: 113
effective length of query: 981
effective length of database: 13,968,660
effective search space: 13703255460
effective search space used: 13703255460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.