Guide to the Human Genome
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Name: PLEKHF1 Sequence: fasta or formatted (279aa) NCBI GI: 153791377
Description:

apoptosis-inducing protein D

Referenced in:

Inositol Pathways
Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         27           2
 C cysteine            4.3         12           1
 D aspartate           4.3         12           4
 E glutamate           7.9         22           2
 F phenylalanine       3.6         10           2
 G glycine             5.7         16           1
 H histidine           2.9          8           2
 I isoleucine          4.7         13           2
 K lysine              5.0         14           2
 L leucine             7.9         22           2
 M methionine          1.1          3           1
 N asparagine          1.8          5           1
 P proline             5.7         16           2
 Q glutamine           4.7         13           2
 R arginine            9.0         25           2
 S serine              8.6         24           2
 T threonine           4.3         12           1
 V valine              5.7         16           2
 W tryptophan          1.8          5           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   apoptosis-inducing protein D 
PLEKHF2               0.491   phafin 2 
FGD6                  0.190   FYVE, RhoGEF and PH domain containing 6 
FGD5                  0.126   FYVE, RhoGEF and PH domain containing 5 
FGD4                  0.106   FYVE, RhoGEF and PH domain containing 4 
FGD2                  0.102   FYVE, RhoGEF and PH domain containing 2 
ZFYVE26               0.097   zinc finger, FYVE domain containing 26 
FGD1                  0.084   faciogenital dysplasia protein 
ZFYVE28               0.078   zinc finger, FYVE domain containing 28 
ZFYVE9                0.077   zinc finger, FYVE domain containing 9 isoform 3 [Hom...
EEA1                  0.077   early endosome antigen 1, 162kD 
WDFY3                 0.075   WD repeat and FYVE domain containing 3 isoform 3 [Ho...
WDFY3                 0.075   WD repeat and FYVE domain containing 3 isoform 1 [Ho...
ZFYVE9                0.073   zinc finger, FYVE domain containing 9 isoform 1 [Hom...
ZFYVE9                0.071   zinc finger, FYVE domain containing 9 isoform 2 [Homo...
ZFYVE16               0.066   zinc finger, FYVE domain containing 16 
ZFYVE16               0.066   zinc finger, FYVE domain containing 16 
ZFYVE21               0.066   zinc finger, FYVE domain containing 21 
RUFY2                 0.064   RUN and FYVE domain-containing 2 isoform a 
MTMR4                 0.062   myotubularin related protein 4 
RUFY1                 0.062   RUN and FYVE domain-containing 1 isoform b 
RUFY1                 0.062   RUN and FYVE domain-containing 1 isoform b 
RUFY1                 0.062   RUN and FYVE domain-containing 1 isoform a 
HGS                   0.062   hepatocyte growth factor-regulated tyrosine kinase su...
FGD3                  0.060   FYVE, RhoGEF and PH domain containing 3 
FGD3                  0.060   FYVE, RhoGEF and PH domain containing 3 
FARP1                 0.058   FERM, RhoGEF, and pleckstrin domain protein 1 isoform...
FARP2                 0.058   FERM, RhoGEF and pleckstrin domain protein 2 
ANKFY1                0.053   ankyrin repeat and FYVE domain containing 1 isoform...
MTMR3                 0.053   myotubularin-related protein 3 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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