Guide to the Human Genome
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Name: RUFY1 Sequence: fasta or formatted (600aa) NCBI GI: 94721330
Description:

RUN and FYVE domain-containing 1 isoform b

Referenced in:

Additional Interaction Domain Families
Zinc Finger Proteins

Other entries for this name:
alt mRNA [600aa] RUN and FYVE domain-containing 1 isoform b
alt prot [708aa] RUN and FYVE domain-containing 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         31           2
 C cysteine            2.7         16           1
 D aspartate           4.7         28           2
 E glutamate          12.5         75           3
 F phenylalanine       1.8         11           2
 G glycine             4.3         26           2
 H histidine           3.3         20           2
 I isoleucine          3.3         20           1
 K lysine              9.2         55           2
 L leucine            14.5         87           3
 M methionine          3.5         21           2
 N asparagine          3.0         18           1
 P proline             1.3          8           1
 Q glutamine           8.7         52           3
 R arginine            4.8         29           2
 S serine              7.0         42           2
 T threonine           3.5         21           1
 V valine              4.8         29           2
 W tryptophan          0.5          3           1
 Y tyrosine            1.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RUN and FYVE domain-containing 1 isoform b 
RUFY1                 1.000   RUN and FYVE domain-containing 1 isoform b 
RUFY1                 1.000   RUN and FYVE domain-containing 1 isoform a 
RUFY2                 0.629   RUN and FYVE domain-containing 2 isoform a 
RUFY3                 0.461   RUN and FYVE domain containing 3 isoform 1 
RUFY3                 0.382   RUN and FYVE domain containing 3 isoform 3 
RUFY3                 0.380   RUN and FYVE domain containing 3 isoform 2 
RUFY2                 0.356   RUN and FYVE domain-containing 2 isoform b 
EEA1                  0.088   early endosome antigen 1, 162kD 
FYCO1                 0.080   FYVE and coiled-coil domain containing 1 
RUNDC3B               0.070   RUN domain containing 3B isoform c 
RUNDC3A               0.069   RUN domain containing 3A isoform 3 
RUNDC3B               0.069   RUN domain containing 3B isoform b 
RUNDC3A               0.066   RUN domain containing 3A isoform 1 
RUNDC3A               0.066   RUN domain containing 3A isoform 2 
RUNDC3B               0.062   RUN domain containing 3B isoform a 
DSP                   0.058   desmoplakin isoform I 
CCDC88A               0.058   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.058   coiled-coil domain containing 88A isoform 1 
MYH9                  0.055   myosin, heavy polypeptide 9, non-muscle 
MYH11                 0.055   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.055   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.055   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.055   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
GRIPAP1               0.054   GRIP1 associated protein 1 isoform 2 
MYH6                  0.054   myosin heavy chain 6 
MYH1                  0.053   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH10                 0.053   myosin, heavy polypeptide 10, non-muscle 
LOC100133758          0.052   PREDICTED: hypothetical protein, partial 
LOC440243             0.051   PREDICTED: Putative golgin subfamily A member 6-lik...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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