Guide to the Human Genome
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Search of human proteins with 153266795

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|153266795 adenylate cyclase activating polypeptide precursor
[Homo sapiens]
         (176 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|153266792 adenylate cyclase activating polypeptide precursor ...   355   9e-99
gi|153266795 adenylate cyclase activating polypeptide precursor ...   355   9e-99
gi|4507897 vasoactive intestinal peptide isoform 1 preproprotein...    70   7e-13
gi|37588853 vasoactive intestinal peptide isoform 2 preproprotei...    69   3e-12
gi|11345450 secretin preproprotein [Homo sapiens]                      47   1e-05
gi|11034841 growth hormone releasing hormone preproprotein [Homo...    37   0.009
gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo ...    37   0.012
gi|32880203 cadherin-like 24 isoform 2 [Homo sapiens]                  33   0.17 
gi|32880206 cadherin-like 24 isoform 1 [Homo sapiens]                  33   0.17 
gi|239757043 PREDICTED: functional smad suppressing element 18 [...    32   0.22 
gi|239751555 PREDICTED: functional smad suppressing element 18 [...    32   0.22 
gi|239746067 PREDICTED: functional smad suppressing element 18 [...    32   0.22 
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]         32   0.28 
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa...    31   0.49 
gi|24497519 mannosidase, alpha, class 1A, member 1 [Homo sapiens]      31   0.63 
gi|4503945 glucagon preproprotein [Homo sapiens]                       30   0.83 
gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sap...    30   0.83 
gi|18426904 Werner helicase interacting protein isoform 2 [Homo ...    30   0.83 
gi|18426902 Werner helicase interacting protein isoform 1 [Homo ...    30   0.83 
gi|239787092 A20-binding inhibitor of NF-kappaB activation 2 iso...    30   1.1  
gi|21735552 mitogen-activated protein kinase kinase kinase 12 [H...    30   1.1  
gi|239757810 PREDICTED: similar to protein phosphatase 1, regula...    30   1.4  
gi|225690502 junctophilin 4 [Homo sapiens]                             30   1.4  
gi|225690500 junctophilin 4 [Homo sapiens]                             30   1.4  
gi|58761532 protein phosphatase 1, regulatory (inhibitor) subuni...    30   1.4  
gi|223468693 hypothetical protein LOC100130361 [Homo sapiens]          29   1.8  
gi|223468690 hypothetical protein LOC100132994 [Homo sapiens]          29   1.8  
gi|239752714 PREDICTED: hypothetical protein XP_002345351 [Homo ...    29   1.8  
gi|239747249 PREDICTED: hypothetical protein [Homo sapiens]            29   1.8  
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ...    29   1.8  

>gi|153266792 adenylate cyclase activating polypeptide precursor
           [Homo sapiens]
          Length = 176

 Score =  355 bits (912), Expect = 9e-99
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MTMCSGARLALLVYGIIMHSSVYSSPAAAGLRFPGIRPEEEAYGEDGNPLPDFDGSEPPG 60
           MTMCSGARLALLVYGIIMHSSVYSSPAAAGLRFPGIRPEEEAYGEDGNPLPDFDGSEPPG
Sbjct: 1   MTMCSGARLALLVYGIIMHSSVYSSPAAAGLRFPGIRPEEEAYGEDGNPLPDFDGSEPPG 60

Query: 61  AGSPASAPRAAAAWYRPAGRRDVAHGILNEAYRKVLDQLSAGKHLQSLVARGVGGSLGGG 120
           AGSPASAPRAAAAWYRPAGRRDVAHGILNEAYRKVLDQLSAGKHLQSLVARGVGGSLGGG
Sbjct: 61  AGSPASAPRAAAAWYRPAGRRDVAHGILNEAYRKVLDQLSAGKHLQSLVARGVGGSLGGG 120

Query: 121 AGDDAEPLSKRHSDGIFTDSYSRYRKQMAVKKYLAAVLGKRYKQRVKNKGRRIAYL 176
           AGDDAEPLSKRHSDGIFTDSYSRYRKQMAVKKYLAAVLGKRYKQRVKNKGRRIAYL
Sbjct: 121 AGDDAEPLSKRHSDGIFTDSYSRYRKQMAVKKYLAAVLGKRYKQRVKNKGRRIAYL 176


>gi|153266795 adenylate cyclase activating polypeptide precursor
           [Homo sapiens]
          Length = 176

 Score =  355 bits (912), Expect = 9e-99
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MTMCSGARLALLVYGIIMHSSVYSSPAAAGLRFPGIRPEEEAYGEDGNPLPDFDGSEPPG 60
           MTMCSGARLALLVYGIIMHSSVYSSPAAAGLRFPGIRPEEEAYGEDGNPLPDFDGSEPPG
Sbjct: 1   MTMCSGARLALLVYGIIMHSSVYSSPAAAGLRFPGIRPEEEAYGEDGNPLPDFDGSEPPG 60

Query: 61  AGSPASAPRAAAAWYRPAGRRDVAHGILNEAYRKVLDQLSAGKHLQSLVARGVGGSLGGG 120
           AGSPASAPRAAAAWYRPAGRRDVAHGILNEAYRKVLDQLSAGKHLQSLVARGVGGSLGGG
Sbjct: 61  AGSPASAPRAAAAWYRPAGRRDVAHGILNEAYRKVLDQLSAGKHLQSLVARGVGGSLGGG 120

Query: 121 AGDDAEPLSKRHSDGIFTDSYSRYRKQMAVKKYLAAVLGKRYKQRVKNKGRRIAYL 176
           AGDDAEPLSKRHSDGIFTDSYSRYRKQMAVKKYLAAVLGKRYKQRVKNKGRRIAYL
Sbjct: 121 AGDDAEPLSKRHSDGIFTDSYSRYRKQMAVKKYLAAVLGKRYKQRVKNKGRRIAYL 176


>gi|4507897 vasoactive intestinal peptide isoform 1 preproprotein
           [Homo sapiens]
          Length = 170

 Score = 70.5 bits (171), Expect = 7e-13
 Identities = 39/79 (49%), Positives = 55/79 (69%), Gaps = 6/79 (7%)

Query: 84  AHGILNEAYRKVLDQLSAGKHLQSLVARGVGGSLGGGAGDDAEPLSKRHSDGIFTDSYSR 143
           A G+    + K+L QLSA K+L+SL+ + V  ++     +D  P+ KRHSD +FTD+Y+R
Sbjct: 82  ADGVFTSDFSKLLGQLSAKKYLESLMGKRVSSNIS----EDPVPV-KRHSDAVFTDNYTR 136

Query: 144 YRKQMAVKKYLAAVL-GKR 161
            RKQMAVKKYL ++L GKR
Sbjct: 137 LRKQMAVKKYLNSILNGKR 155



 Score = 40.8 bits (94), Expect = 6e-04
 Identities = 15/36 (41%), Positives = 25/36 (69%)

Query: 131 RHSDGIFTDSYSRYRKQMAVKKYLAAVLGKRYKQRV 166
           RH+DG+FT  +S+   Q++ KKYL +++GKR    +
Sbjct: 80  RHADGVFTSDFSKLLGQLSAKKYLESLMGKRVSSNI 115


>gi|37588853 vasoactive intestinal peptide isoform 2 preproprotein
           [Homo sapiens]
          Length = 169

 Score = 68.6 bits (166), Expect = 3e-12
 Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 7/79 (8%)

Query: 84  AHGILNEAYRKVLDQLSAGKHLQSLVARGVGGSLGGGAGDDAEPLSKRHSDGIFTDSYSR 143
           A G+    + K+L QLSA K+L+SL+ + V         +D  P+ KRHSD +FTD+Y+R
Sbjct: 82  ADGVFTSDFSKLLGQLSAKKYLESLMGKRVSN-----ISEDPVPV-KRHSDAVFTDNYTR 135

Query: 144 YRKQMAVKKYLAAVL-GKR 161
            RKQMAVKKYL ++L GKR
Sbjct: 136 LRKQMAVKKYLNSILNGKR 154



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 15/31 (48%), Positives = 24/31 (77%)

Query: 131 RHSDGIFTDSYSRYRKQMAVKKYLAAVLGKR 161
           RH+DG+FT  +S+   Q++ KKYL +++GKR
Sbjct: 80  RHADGVFTSDFSKLLGQLSAKKYLESLMGKR 110


>gi|11345450 secretin preproprotein [Homo sapiens]
          Length = 121

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 117 LGGGAGDDAEPLSKRHSDGIFTDSYSRYRKQMAVKKYLAAVLGKRYKQRVKN 168
           LGG A   A P ++RHSDG FT   SR R+   +++ L  ++GKR +Q  +N
Sbjct: 13  LGGSAARPAPPRARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQDAEN 64


>gi|11034841 growth hormone releasing hormone preproprotein [Homo
           sapiens]
          Length = 108

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 81  RDVAHGILNEAYRKVLDQLSAGKHLQSLVARGVGGSLGGGAGDDAEPLSKRHSDGIFTDS 140
           R  A  I   +YRKVL QLSA K LQ +++R          G+  +    R   G   DS
Sbjct: 30  RRYADAIFTNSYRKVLGQLSARKLLQDIMSR--------QQGESNQERGARARLGRQVDS 81

Query: 141 YSRYRKQMAVKKYLAAVLGK 160
               +KQM ++  L A+L K
Sbjct: 82  MWAEQKQMELESILVALLQK 101



 Score = 31.6 bits (70), Expect = 0.37
 Identities = 12/43 (27%), Positives = 27/43 (62%)

Query: 130 KRHSDGIFTDSYSRYRKQMAVKKYLAAVLGKRYKQRVKNKGRR 172
           +R++D IFT+SY +   Q++ +K L  ++ ++  +  + +G R
Sbjct: 30  RRYADAIFTNSYRKVLGQLSARKLLQDIMSRQQGESNQERGAR 72


>gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo
           sapiens]
          Length = 756

 Score = 36.6 bits (83), Expect = 0.012
 Identities = 36/99 (36%), Positives = 42/99 (42%), Gaps = 19/99 (19%)

Query: 30  GLRFPGIRPEEEAYGE--DGNPLPDFDGSEPPGAGSPASAPRAAAAWYRP--AGRRDVAH 85
           G R PG  P +E  G+   G  L    G   PG GS          W  P  A   DVA 
Sbjct: 573 GWRLPGQAPGQELLGQARPGGGLSSLSGG--PGGGS------GVGRWQLPGRAAAEDVA- 623

Query: 86  GILNEAYRKVLDQLSAGKHL--QSLVARGVGGSLGGGAG 122
               EA  KVL+    G+    Q L A G+G + GGGAG
Sbjct: 624 ----EAAAKVLEGAGPGRPRRGQLLRAAGLGQARGGGAG 658


>gi|32880203 cadherin-like 24 isoform 2 [Homo sapiens]
          Length = 781

 Score = 32.7 bits (73), Expect = 0.17
 Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 31/153 (20%)

Query: 4   CSGARLALLVYGIIMHSSVYSSPAAAGLRFPGIRPEEEAYGEDGN-----------PLPD 52
           C GA LAL+V  + +        A   L    +R     Y ++G             L +
Sbjct: 610 CVGALLALVVLFVALRRQ--KQEALMVLEEEDVRENIITYDDEGGGEEDTEAFDITALQN 667

Query: 53  FDGSEPPGAGSPAS---APRAAAAWY-RPAGRRDVAHGI---LNEAYR----------KV 95
            DG+ PP  G PA     PRA  +   RP G  DVA  +   L EA            +V
Sbjct: 668 PDGAAPPAPGPPARRDVLPRARVSRQPRPPGPADVAQLLALRLREADEDPGVPPYDSVQV 727

Query: 96  LDQLSAGKHLQSLVARGVGGSLGGGAGDDAEPL 128
                 G    SL + G  GS  GGA   AEPL
Sbjct: 728 YGYEGRGSSCGSLSSLG-SGSEAGGAPGPAEPL 759


>gi|32880206 cadherin-like 24 isoform 1 [Homo sapiens]
          Length = 819

 Score = 32.7 bits (73), Expect = 0.17
 Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 31/153 (20%)

Query: 4   CSGARLALLVYGIIMHSSVYSSPAAAGLRFPGIRPEEEAYGEDGN-----------PLPD 52
           C GA LAL+V  + +        A   L    +R     Y ++G             L +
Sbjct: 648 CVGALLALVVLFVALRRQ--KQEALMVLEEEDVRENIITYDDEGGGEEDTEAFDITALQN 705

Query: 53  FDGSEPPGAGSPAS---APRAAAAWY-RPAGRRDVAHGI---LNEAYR----------KV 95
            DG+ PP  G PA     PRA  +   RP G  DVA  +   L EA            +V
Sbjct: 706 PDGAAPPAPGPPARRDVLPRARVSRQPRPPGPADVAQLLALRLREADEDPGVPPYDSVQV 765

Query: 96  LDQLSAGKHLQSLVARGVGGSLGGGAGDDAEPL 128
                 G    SL + G  GS  GGA   AEPL
Sbjct: 766 YGYEGRGSSCGSLSSLG-SGSEAGGAPGPAEPL 797


>gi|239757043 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 996

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 13/80 (16%)

Query: 55  GSEPPGAGSPASAPRAAAAWYRPAGRRDVA--HGILNEAYRKVLDQLSAGKHLQSLVARG 112
           GS PP     A+   AAAA   PAG R  A  H  L E  +        G +  S   R 
Sbjct: 572 GSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRK-----AGGGSYHHSSAFRP 626

Query: 113 VGGSLGGGAGDDAEPLSKRH 132
           VGG       DDAE L+K H
Sbjct: 627 VGGK------DDAESLAKLH 640


>gi|239751555 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 1252

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 13/80 (16%)

Query: 55  GSEPPGAGSPASAPRAAAAWYRPAGRRDVA--HGILNEAYRKVLDQLSAGKHLQSLVARG 112
           GS PP     A+   AAAA   PAG R  A  H  L E  +        G +  S   R 
Sbjct: 572 GSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRK-----AGGGSYHHSSAFRP 626

Query: 113 VGGSLGGGAGDDAEPLSKRH 132
           VGG       DDAE L+K H
Sbjct: 627 VGGK------DDAESLAKLH 640


>gi|239746067 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 1252

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 13/80 (16%)

Query: 55  GSEPPGAGSPASAPRAAAAWYRPAGRRDVA--HGILNEAYRKVLDQLSAGKHLQSLVARG 112
           GS PP     A+   AAAA   PAG R  A  H  L E  +        G +  S   R 
Sbjct: 572 GSTPPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRK-----AGGGSYHHSSAFRP 626

Query: 113 VGGSLGGGAGDDAEPLSKRH 132
           VGG       DDAE L+K H
Sbjct: 627 VGGK------DDAESLAKLH 640


>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
          Length = 2968

 Score = 32.0 bits (71), Expect = 0.28
 Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 38  PEEEAYGEDGNPLPDFDGSEPPGAGSPASAPRAAAAWYRPA---GRRDVAHGILNEAYRK 94
           P +E  G  G P P F   +P   G  AS PR      + A   GR+D     L E   +
Sbjct: 205 PAKERAGRGGEPPPLFGKKDPRARGEEASGPRGVVDLTQEARAEGRQDRGPPRLAE---R 261

Query: 95  VLDQLSAGKHLQSLVARGVGGSLGGGAGDDAEP 127
           +   L+  K   + +   V     GGAGD   P
Sbjct: 262 LSPFLAESKTKNAALQPSVLTMCNGGAGDVGLP 294


>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
            sapiens]
          Length = 2715

 Score = 31.2 bits (69), Expect = 0.49
 Identities = 29/109 (26%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 21   SVYSSPAAAGLRFPGIRPEEEAYG-EDGNPLPDFDGSEPPGAGSPASAPRAAAAWYRPAG 79
            +V S+P  A    PG    E+  G +DG         +P G G+P S P    A      
Sbjct: 2040 TVVSAPGLAPSATPGAPRIEQLDGVDDGTDSEAEAVQQPRGQGTPPSGPGVVRA------ 2093

Query: 80   RRDVAHGILNEAYRKVLDQLSAGKHLQSLVARGVGGSLGGGAGDDAEPL 128
                  G+L  A  +          +   V + +GG   GGAG   E L
Sbjct: 2094 ------GVLGAAGDRARPPEDLPSEIVDFVLKNLGGPGDGGAGPREESL 2136


>gi|24497519 mannosidase, alpha, class 1A, member 1 [Homo sapiens]
          Length = 653

 Score = 30.8 bits (68), Expect = 0.63
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 1   MTMCSGARLAL-----LVYGIIMHSSVYSSPAAAGLRFPGIRPEEEAYG-----EDGNP 49
           +T+C GA   L     L+ G++ HSS    PAA     PG R E+ A G     E+G P
Sbjct: 52  ITLCFGAIFFLPDSSKLLSGVLFHSSPALQPAADHKPGPGARAEDAAEGRARRREEGAP 110


>gi|4503945 glucagon preproprotein [Homo sapiens]
          Length = 180

 Score = 30.4 bits (67), Expect = 0.83
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 12/89 (13%)

Query: 84  AHGILNEAYRKVLDQLSAGKHLQSLVARGVGGSLGGGAGDDAEPLSKRHSDGIFTDSYSR 143
           + G     Y K LD   A   +Q L+      +      D+ E    RH++G FT   S 
Sbjct: 54  SQGTFTSDYSKYLDSRRAQDFVQWLMNTKRNRNNIAKRHDEFE----RHAEGTFTSDVSS 109

Query: 144 YRKQMAVKKYLAAVLGKRYKQRVKNKGRR 172
           Y +  A K+++A +        VK +GRR
Sbjct: 110 YLEGQAAKEFIAWL--------VKGRGRR 130



 Score = 28.1 bits (61), Expect = 4.1
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 8/32 (25%)

Query: 121 AGDDAEPLS--------KRHSDGIFTDSYSRY 144
           +   A+PLS        KRHS G FT  YS+Y
Sbjct: 34  SASQADPLSDPDQMNEDKRHSQGTFTSDYSKY 65


>gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo
           sapiens]
          Length = 1258

 Score = 30.4 bits (67), Expect = 0.83
 Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 9/74 (12%)

Query: 44  GEDGNP-LPDFDGSE----PPGAGSPASAPR---AAAAWYRPAGRRDVAHGILNEAYRKV 95
           GED  P LP   GS     P G  SP  AP    A AA   P G   V+H  L  +Y   
Sbjct: 134 GEDEKPPLPPRSGSTSISAPTGPSSPLPAPETPTAPAAESAPNGLSTVSHDYLKGSYGLD 193

Query: 96  LDQLSAG-KHLQSL 108
           L+ +  G  HL  L
Sbjct: 194 LEAVRGGASHLPHL 207


>gi|18426904 Werner helicase interacting protein isoform 2 [Homo
           sapiens]
          Length = 640

 Score = 30.4 bits (67), Expect = 0.83
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 24  SSPAAAGLRFPG------IRPEEEAYGE-DGNPLPDFDGSEPPGAGSPASAPRAAAAWYR 76
           ++ AAAG   P        + EEEA G+ DG+   D DG + PG    A A  AA A+  
Sbjct: 144 AAAAAAGSASPRSWDEAEAQEEEEAVGDGDGDGDADADGEDDPGHWD-ADAAEAATAFGA 202

Query: 77  PAGRRDVAHGILNEAYRKVL 96
             G R     +  E  R++L
Sbjct: 203 SGGGRPHPRALAAEEIRQML 222


>gi|18426902 Werner helicase interacting protein isoform 1 [Homo
           sapiens]
          Length = 665

 Score = 30.4 bits (67), Expect = 0.83
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 24  SSPAAAGLRFPG------IRPEEEAYGE-DGNPLPDFDGSEPPGAGSPASAPRAAAAWYR 76
           ++ AAAG   P        + EEEA G+ DG+   D DG + PG    A A  AA A+  
Sbjct: 144 AAAAAAGSASPRSWDEAEAQEEEEAVGDGDGDGDADADGEDDPGHWD-ADAAEAATAFGA 202

Query: 77  PAGRRDVAHGILNEAYRKVL 96
             G R     +  E  R++L
Sbjct: 203 SGGGRPHPRALAAEEIRQML 222


>gi|239787092 A20-binding inhibitor of NF-kappaB activation 2
           isoform 1 [Homo sapiens]
          Length = 429

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 27/129 (20%)

Query: 56  SEPPGAGSPASAPRAAAA---WYRPAGRRDVAHGILNEAYRKVLDQLSAGKHLQSLVARG 112
           S  PG+G    APRAAAA    Y  AG+R           R++ DQL+A     +L+AR 
Sbjct: 2   SRDPGSGGWEEAPRAAAALCTLYHEAGQR----------LRRLQDQLAA---RDALIAR- 47

Query: 113 VGGSLGGGAGDDAEPLSKRHSDGIFTDSYSRYRKQMAVKKYLAAVLG-----KRYKQRVK 167
           +   L    GD A  L          +  +R+R+Q+  ++  AA        +R  +R++
Sbjct: 48  LRARLAALEGDAAPSLV-----DALLEQVARFREQLRRQEGGAAEAQMRQEIERLTERLE 102

Query: 168 NKGRRIAYL 176
            K R +  L
Sbjct: 103 EKEREMQQL 111


>gi|21735552 mitogen-activated protein kinase kinase kinase 12 [Homo
           sapiens]
          Length = 859

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 57  EPPGAGSPASAPRAAAAWYR-PAGRRDVAHG-ILNEAYRKVLDQLSAGKHLQSLVARGVG 114
           EP G GSP       +AW   P   R + H  +L +      D LSA     +L +RG G
Sbjct: 570 EPGGPGSPGGLGGGPSAWEACPPALRGLHHDLLLRKMSSSSPDLLSA-----ALGSRGRG 624

Query: 115 GSLGGGAGDDAEP 127
            +  GGAGD   P
Sbjct: 625 AT--GGAGDPGSP 635


>gi|239757810 PREDICTED: similar to protein phosphatase 1,
           regulatory (inhibitor) subunit 3F [Homo sapiens]
          Length = 724

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 39/132 (29%), Positives = 48/132 (36%), Gaps = 16/132 (12%)

Query: 24  SSPAAAG---LRFPGIR--PEEEAYGEDGNPLPDFDGSEPP-GAGSPASAP---RAAAAW 74
           SSP  A    L+ P IR  P     G  G+P     G +   GA  P   P   +A A W
Sbjct: 400 SSPPVAFTEVLQAPAIRIPPSSPLCGLGGSPRDQASGPDASEGATGPFLEPSQQQAEATW 459

Query: 75  ---YRPAGRRDVAHGILNEAYRKVLDQLSAGKHLQSL----VARGVGGSLGGGAGDDAEP 127
                  G  +   G         +DQ     +L  L     A   GG+ GGG G     
Sbjct: 460 GVSSENGGGLEAVSGSEELLGEDTIDQELEQLYLSHLSRLRAAVAAGGAGGGGEGSTDGG 519

Query: 128 LSKRHSDGIFTD 139
           +S  H  GI TD
Sbjct: 520 MSPSHPLGILTD 531


>gi|225690502 junctophilin 4 [Homo sapiens]
          Length = 628

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 31  LRFPGIRPEEEAYGEDGNPLPD-----FDGSEPPGAGSP--ASAPRAAAAWYRPAGRR 81
           L  PG RP +++ G D  PL +     ++    P  GSP   S+P ++   +RP   R
Sbjct: 420 LEAPGRRPRQDSEGSDTEPLDEDSPGVYENGLTPSEGSPELPSSPASSRQPWRPPACR 477


>gi|225690500 junctophilin 4 [Homo sapiens]
          Length = 628

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 31  LRFPGIRPEEEAYGEDGNPLPD-----FDGSEPPGAGSP--ASAPRAAAAWYRPAGRR 81
           L  PG RP +++ G D  PL +     ++    P  GSP   S+P ++   +RP   R
Sbjct: 420 LEAPGRRPRQDSEGSDTEPLDEDSPGVYENGLTPSEGSPELPSSPASSRQPWRPPACR 477


>gi|58761532 protein phosphatase 1, regulatory (inhibitor) subunit
           3F [Homo sapiens]
          Length = 799

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 39/132 (29%), Positives = 48/132 (36%), Gaps = 16/132 (12%)

Query: 24  SSPAAAG---LRFPGIR--PEEEAYGEDGNPLPDFDGSEPP-GAGSPASAP---RAAAAW 74
           SSP  A    L+ P IR  P     G  G+P     G +   GA  P   P   +A A W
Sbjct: 400 SSPPVAFTEVLQAPAIRIPPSSPLCGLGGSPRDQASGPDASEGATGPFLEPSQQQAEATW 459

Query: 75  ---YRPAGRRDVAHGILNEAYRKVLDQLSAGKHLQSL----VARGVGGSLGGGAGDDAEP 127
                  G  +   G         +DQ     +L  L     A   GG+ GGG G     
Sbjct: 460 GVSSENGGGLEAVSGSEELLGEDTIDQELEQLYLSHLSRLRAAVAAGGAGGGGEGSTDGG 519

Query: 128 LSKRHSDGIFTD 139
           +S  H  GI TD
Sbjct: 520 MSPSHPLGILTD 531


>gi|223468693 hypothetical protein LOC100130361 [Homo sapiens]
          Length = 514

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 16/58 (27%), Positives = 23/58 (39%)

Query: 24  SSPAAAGLRFPGIRPEEEAYGEDGNPLPDFDGSEPPGAGSPASAPRAAAAWYRPAGRR 81
           +S  A G  FP       A   +    P F G  P G       P+ ++   +PAGR+
Sbjct: 328 ASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKPQKPKHSSPGKKPAGRK 385


>gi|223468690 hypothetical protein LOC100132994 [Homo sapiens]
          Length = 514

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 16/58 (27%), Positives = 23/58 (39%)

Query: 24  SSPAAAGLRFPGIRPEEEAYGEDGNPLPDFDGSEPPGAGSPASAPRAAAAWYRPAGRR 81
           +S  A G  FP       A   +    P F G  P G       P+ ++   +PAGR+
Sbjct: 328 ASQLALGRGFPACGERLSAAPPEPATFPPFSGVRPQGMSKKPQKPKHSSPGKKPAGRK 385


>gi|239752714 PREDICTED: hypothetical protein XP_002345351 [Homo
           sapiens]
          Length = 202

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 19/34 (55%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 53  FDGSEPPGAGSPASAPR-AAAAW--YRPAGRRDV 83
           F GS PP AGS AS P   A AW   R AGR  V
Sbjct: 157 FRGSPPPPAGSSASLPHFPATAWGLCRLAGRESV 190


>gi|239747249 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 202

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 19/34 (55%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 53  FDGSEPPGAGSPASAPR-AAAAW--YRPAGRRDV 83
           F GS PP AGS AS P   A AW   R AGR  V
Sbjct: 157 FRGSPPPPAGSSASLPHFPATAWGLCRLAGRESV 190


>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
           [Homo sapiens]
          Length = 285

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 10/62 (16%)

Query: 54  DGSEPPGAGSPASAPRAAAAWYRPAGRRDVAHGILNEAYRKVLDQLSAGKHLQSLVARGV 113
           +G  P GAG+ A+A    A    P+G ++ A G          DQ++A K+ +      V
Sbjct: 25  EGESPAGAGTGAAAGAGGATAAPPSGNQNGAEG----------DQINASKNEEDAGKMFV 74

Query: 114 GG 115
           GG
Sbjct: 75  GG 76


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,883,508
Number of Sequences: 37866
Number of extensions: 444156
Number of successful extensions: 2391
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 2339
Number of HSP's gapped (non-prelim): 143
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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