Guide to the Human Genome
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Name: VIP Sequence: fasta or formatted (170aa) NCBI GI: 4507897
Description:

vasoactive intestinal peptide isoform 1 preproprotein

Referenced in:

Peptide and Protein G-coupled Signals

Other entries for this name:
alt prot [169aa] vasoactive intestinal peptide isoform 2 preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         12           1
 C cysteine            0.0          0           0
 D aspartate           7.6         13           1
 E glutamate           6.5         11           2
 F phenylalanine       3.5          6           1
 G glycine             4.1          7           1
 H histidine           1.2          2           1
 I isoleucine          2.4          4           1
 K lysine              7.1         12           2
 L leucine            12.9         22           2
 M methionine          2.4          4           1
 N asparagine          5.3          9           1
 P proline             5.3          9           1
 Q glutamine           3.5          6           1
 R arginine            6.5         11           1
 S serine             10.6         18           2
 T threonine           4.1          7           1
 V valine              5.9         10           1
 W tryptophan          0.6          1           1
 Y tyrosine            3.5          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vasoactive intestinal peptide isoform 1 preproprotein... 
VIP                   0.981   vasoactive intestinal peptide isoform 2 preproprotei...
ADCYAP1               0.145   adenylate cyclase activating polypeptide precursor ...
ADCYAP1               0.145   adenylate cyclase activating polypeptide precursor ...
GCG                   0.090   glucagon preproprotein 
GHRH                  0.061   growth hormone releasing hormone preproprotein [Homo...
SCT                   0.026   secretin preproprotein 
TTN                   0.016   titin isoform novex-3 
BRPF3                 0.013   bromodomain and PHD finger containing, 3 
PDS5B                 0.010   PDS5, regulator of cohesion maintenance, homolog B [H...
ANKRD26               0.010   ankyrin repeat domain 26 
APCDD1                0.010   adenomatosis polyposis coli down-regulated 1 
ALMS1                 0.006   Alstrom syndrome 1 
MIA3                  0.006   melanoma inhibitory activity family, member 3 [Homo...
ARHGAP6               0.006   Rho GTPase activating protein 6 isoform 4 
ARHGAP6               0.006   Rho GTPase activating protein 6 isoform 1 
EPN3                  0.006   epsin 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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