Guide to the Human Genome
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Name: GHRH Sequence: fasta or formatted (108aa) NCBI GI: 11034841
Description:

growth hormone releasing hormone preproprotein

Referenced in:

Growth Hormone and Related Hormones
Homeobox and Related Proteins
Hypothalamus
Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5          7           1
 C cysteine            0.9          1           1
 D aspartate           2.8          3           1
 E glutamate           4.6          5           1
 F phenylalanine       3.7          4           3
 G glycine             4.6          5           1
 H histidine           1.9          2           1
 I isoleucine          3.7          4           1
 K lysine              3.7          4           1
 L leucine            13.0         14           2
 M methionine          4.6          5           1
 N asparagine          3.7          4           1
 P proline             4.6          5           4
 Q glutamine           9.3         10           2
 R arginine           10.2         11           2
 S serine             11.1         12           2
 T threonine           2.8          3           1
 V valine              4.6          5           1
 W tryptophan          1.9          2           1
 Y tyrosine            1.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   growth hormone releasing hormone preproprotein [Homo... 
VIP                   0.099   vasoactive intestinal peptide isoform 1 preproprotein...
VIP                   0.094   vasoactive intestinal peptide isoform 2 preproprotei...
ADCYAP1               0.063   adenylate cyclase activating polypeptide precursor ...
ADCYAP1               0.063   adenylate cyclase activating polypeptide precursor ...
SCT                   0.031   secretin preproprotein 
CACNA1D               0.010   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.010   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.010   calcium channel, voltage-dependent, L type, alpha 1D ...
TP63                  0.010   tumor protein p63 isoform 5 
TP63                  0.010   tumor protein p63 isoform 4 
TP63                  0.010   tumor protein p63 isoform 2 
TP63                  0.010   tumor protein p63 isoform 1 
TRPS1                 0.010   zinc finger transcription factor TRPS1 
JAKMIP1               0.005   janus kinase and microtubule interacting protein 1 i...
JAKMIP1               0.005   janus kinase and microtubule interacting protein 1 ...
RIMS2                 0.005   regulating synaptic membrane exocytosis 2 isoform a...
DIS3L2                0.005   DIS3 mitotic control homolog (S. cerevisiae)-like 2...
TRIM37                0.005   tripartite motif-containing 37 protein 
TRIM37                0.005   tripartite motif-containing 37 protein 
KANK4                 0.005   ankyrin repeat domain 38 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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