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Search of human proteins with 15147335
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15147335 nuclear receptor coactivator 5 [Homo sapiens]
(579 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15147335 nuclear receptor coactivator 5 [Homo sapiens] 1162 0.0
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 82 2e-15
gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens] 55 1e-07
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 54 5e-07
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 52 2e-06
gi|239757964 PREDICTED: hypothetical protein [Homo sapiens] 51 3e-06
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 48 2e-05
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 48 2e-05
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 48 3e-05
gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo sap... 48 3e-05
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 47 4e-05
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 47 4e-05
gi|4503509 eukaryotic translation initiation factor 3, subunit 1... 47 5e-05
gi|239747891 PREDICTED: hypothetical protein [Homo sapiens] 47 6e-05
gi|169167715 PREDICTED: hypothetical protein [Homo sapiens] 46 1e-04
gi|50053795 eukaryotic translation initiation factor 4B [Homo sa... 46 1e-04
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 46 1e-04
gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens] 46 1e-04
gi|188536004 zinc finger protein 469 [Homo sapiens] 45 2e-04
gi|32698692 zinc finger, DHHC domain containing 8 [Homo sapiens] 44 3e-04
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi... 44 3e-04
gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo ... 44 5e-04
gi|148746195 trichohyalin [Homo sapiens] 44 5e-04
gi|18379328 WW domain-containing adapter with a coiled-coil regi... 44 5e-04
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 44 5e-04
gi|146134388 YLP motif containing 1 [Homo sapiens] 44 5e-04
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 42 0.001
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ... 42 0.002
gi|7662228 synaptosomal-associated protein, 91kDa homolog [Homo ... 41 0.003
gi|33946327 nucleoporin 214kDa [Homo sapiens] 41 0.003
>gi|15147335 nuclear receptor coactivator 5 [Homo sapiens]
Length = 579
Score = 1162 bits (3006), Expect = 0.0
Identities = 579/579 (100%), Positives = 579/579 (100%)
Query: 1 MNTAPSRPSPTRRDPYGFGDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDL 60
MNTAPSRPSPTRRDPYGFGDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDL
Sbjct: 1 MNTAPSRPSPTRRDPYGFGDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDL 60
Query: 61 RDHRHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPM 120
RDHRHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPM
Sbjct: 61 RDHRHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPM 120
Query: 121 YRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREEL 180
YRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREEL
Sbjct: 121 YRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREEL 180
Query: 181 YRQYFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQ 240
YRQYFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQ
Sbjct: 181 YRQYFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQ 240
Query: 241 ALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNE 300
ALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNE
Sbjct: 241 ALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYERYKNE 300
Query: 301 CREKEREEIARQAAKMADEAILQERERGGPEEGVRGGHPPAIQSLINLLADNRYLTAEET 360
CREKEREEIARQAAKMADEAILQERERGGPEEGVRGGHPPAIQSLINLLADNRYLTAEET
Sbjct: 301 CREKEREEIARQAAKMADEAILQERERGGPEEGVRGGHPPAIQSLINLLADNRYLTAEET 360
Query: 361 DKIINYLRERKERLMRSSTDSLPGPISRQPLGATSGASLKTQPSSQPLQSGQVLPSATPT 420
DKIINYLRERKERLMRSSTDSLPGPISRQPLGATSGASLKTQPSSQPLQSGQVLPSATPT
Sbjct: 361 DKIINYLRERKERLMRSSTDSLPGPISRQPLGATSGASLKTQPSSQPLQSGQVLPSATPT 420
Query: 421 PSAPPTSQQELQAKILSLFNSGTVTANSSSASPSVAAGNTPNQNFSTAANSQPQQRSQAS 480
PSAPPTSQQELQAKILSLFNSGTVTANSSSASPSVAAGNTPNQNFSTAANSQPQQRSQAS
Sbjct: 421 PSAPPTSQQELQAKILSLFNSGTVTANSSSASPSVAAGNTPNQNFSTAANSQPQQRSQAS 480
Query: 481 GNQPPSILGQGGSAQNMGPRPGAPSQGLFGQPSSRLAPASNMTSQRPVSSTGINFDNPSV 540
GNQPPSILGQGGSAQNMGPRPGAPSQGLFGQPSSRLAPASNMTSQRPVSSTGINFDNPSV
Sbjct: 481 GNQPPSILGQGGSAQNMGPRPGAPSQGLFGQPSSRLAPASNMTSQRPVSSTGINFDNPSV 540
Query: 541 QKALDTLIQSGPALSHLVSQTTAQMGQPQAPMGSYQRHY 579
QKALDTLIQSGPALSHLVSQTTAQMGQPQAPMGSYQRHY
Sbjct: 541 QKALDTLIQSGPALSHLVSQTTAQMGQPQAPMGSYQRHY 579
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 81.6 bits (200), Expect = 2e-15
Identities = 67/176 (38%), Positives = 84/176 (47%), Gaps = 12/176 (6%)
Query: 5 PSRPSPTRRDPYGFGDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHR 64
P SP R G R +S R RRE G+ R+ +DSR+ R+ +D
Sbjct: 389 PRHRSPMREK----GRHDHERTSQSHDRRHERREDTRGKRDRE-KDSREEREYE--QDQS 441
Query: 65 HSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRR- 123
SRD RD R+ R RD RD RD RD R+LRDSRD RD R+ M D RD ++SRDP R
Sbjct: 442 SSRDHRDDREPRDGRDRRDARDTRDRRELRDSRDMRDSRE-MRDYSRDTKESRDPRDSRS 500
Query: 124 -EGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRRE 178
++D R RK+D+Y + R GR ES R E R E
Sbjct: 501 TRDAHDYRDREGRDTHRKEDTYPEESRSY--GRNHLREESSRTEIRNESRNESRSE 554
Score = 60.1 bits (144), Expect = 5e-09
Identities = 59/191 (30%), Positives = 80/191 (41%), Gaps = 18/191 (9%)
Query: 6 SRPSPTRRDPYGFGDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRH 65
+R S RD Y D+RD RD S R R+ RD R RD R S IR H+
Sbjct: 598 TRSSYPERDRYPERDNRDQARDSSFERRHGERDRRDNRE-RDQRPSSPIR-------HQG 649
Query: 66 SRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREG 125
D + + R R V V D RD R RD +RD +R R+ R+ RE
Sbjct: 650 RNDELERDERREERRVDRVDDRRDER--ARERDRERERDRERERERERERDREREKEREL 707
Query: 126 SYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYF 185
+R + ++ D DR RD + R +ER + +ER RE R+
Sbjct: 708 ERERAREREREREKERDRERDRDRDH--------DRERERERERDREKEREREREERERE 759
Query: 186 EEIQRRFDAER 196
E +R + ER
Sbjct: 760 RERERERERER 770
Score = 52.0 bits (123), Expect = 1e-06
Identities = 65/193 (33%), Positives = 84/193 (43%), Gaps = 40/193 (20%)
Query: 10 PTRRD--PYGFGDSRDSRRDRSPIRG-SPRREPRDGRNGRDARDSRDIRDPRDLRDHRHS 66
P RR PY +R +SP R SP RE GR+ + R S+ D RH
Sbjct: 366 PLRRSASPYPSHSLSSPQRKQSPPRHRSPMREK--GRHDHE-RTSQS-------HDRRHE 415
Query: 67 RDLRDHRDSRSVRD-VRDVRDLRDF-RDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRRE 124
R D+R RD +D R+ R++ +D SRD RD R+P RD RD+RD RRE
Sbjct: 416 R----REDTRGKRDREKDSREEREYEQDQSSSRDHRDDREPRDG--RDRRDARDTRDRRE 469
Query: 125 GSYDRYLR----MDDYCRRKDDSYFDR----YRDSFDGRGPPG-----------PESQSR 165
R +R M DY R +S R RD+ D R G ES+S
Sbjct: 470 LRDSRDMRDSREMRDYSRDTKESRDPRDSRSTRDAHDYRDREGRDTHRKEDTYPEESRSY 529
Query: 166 AKERLKREERRRE 178
+ L+ E R E
Sbjct: 530 GRNHLREESSRTE 542
Score = 46.2 bits (108), Expect = 8e-05
Identities = 109/538 (20%), Positives = 198/538 (36%), Gaps = 75/538 (13%)
Query: 21 SRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRD 80
+R+ R+R R R RD R+ RD R+ R+ R+ R+
Sbjct: 712 AREREREREKERDRERDRDRDHDRERERERERDREKEREREREERERERERERERERERE 771
Query: 81 VRDVRDLRDFRDLRDSRDFRDQ---RDPMYDRYRDMRDSRDP-----------MYRREGS 126
R ++ RD+ D+ RD ++ ++R+ R+P YR EGS
Sbjct: 772 RERERARERDKERERQRDWEDKDKGRDDRREKREEIREDRNPRDGHDERKSKKRYRNEGS 831
Query: 127 YDRYLRMDDYCRRKDDSYFDRYRDSFDGR----------GPPGPESQSRAKERLKREERR 176
R RR+ D Y D P S S + R+ R
Sbjct: 832 PSP--RQSPKRRREHSPDSDAYNSGDDKNEKHRLLSQVVRPQESRSLSPSHLTEDRQGRW 889
Query: 177 REELYRQYFEEIQRRFDAERPVDCSVIVVNKQTK--DYAESVGRKVRDLGMVVDLIFLNT 234
+EE + +E RR++ E+ + V V+KQ + + ES + +D+ +
Sbjct: 890 KEEDRKPERKESSRRYE-EQELKEKVSSVDKQREQTEILESSRMRAQDI--------IGH 940
Query: 235 EVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNY 294
S + D + + I Q+ I + ++ G + + D V +
Sbjct: 941 HQSEDRETSDRAHDENKKKAKI-QKKPIKKKKEDDV--GIERGNIETTSEDGQVFSPKKG 997
Query: 295 ERYKNECREKEREEIARQAAKMADEAILQERERGGPEEGVRGGHPPAI--QSLINLLADN 352
++ K+ EK+R++ + +EA Q +++ GP PP + L+ +
Sbjct: 998 QKKKS--IEKKRKKSKGDSDISDEEAAQQSKKKRGPRT------PPITTKEELVEMCNGK 1049
Query: 353 RYLTAEETDKIINYLRERKERLMRS--STDSLPGPISRQPLGATSGASLKTQPSSQPLQS 410
+ + ++KE S S + +P R + + T P S P
Sbjct: 1050 NGILEDS---------QKKEDTAFSDWSDEDVP---DRTEVTEAEHTATATTPGSTPSPL 1097
Query: 411 GQVLPS----ATPTPSAPPTSQQELQAKILSLFNSGTVTANSSSASPSVAAGNTPNQNFS 466
+LP AT T + P + A + F++ +T S+SA+P+ NT N F+
Sbjct: 1098 SSLLPPPPPVATATATTVPATLAATTAAAATSFSTSAITI-STSATPT----NTTNNTFA 1152
Query: 467 TAANSQPQQRSQASGNQPPSILGQGGSAQNMGPRPGAPSQGLFGQPSSRLAPASNMTS 524
+ + R++ + P + + AQ+ P S L S+R + + S
Sbjct: 1153 NEDSHRKCHRTRVEKVETPHVTIE--DAQHRKPMDQKRSSSLGSNRSNRSHTSGRLRS 1208
Score = 45.8 bits (107), Expect = 1e-04
Identities = 54/191 (28%), Positives = 72/191 (37%), Gaps = 13/191 (6%)
Query: 9 SPTRRDPYGFGDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRD 68
S R D G R RGS + + + DS + R RD RD
Sbjct: 553 SEIRNDRMGRSRGRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYPERD 612
Query: 69 LRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYD 128
RD S RD RD R+ RDQR R++ D + RRE
Sbjct: 613 NRDQARDSSFERRHGERDRRDNRE-------RDQRPSSPIRHQGRNDELERDERREER-- 663
Query: 129 RYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEI 188
R R+DD R+D+ +R R+ R + R +ER K E RE R+ E
Sbjct: 664 RVDRVDD---RRDERARERDRERERDRERERERERERDREREKERELERERA-RERERER 719
Query: 189 QRRFDAERPVD 199
++ D ER D
Sbjct: 720 EKERDRERDRD 730
Score = 41.2 bits (95), Expect = 0.003
Identities = 45/169 (26%), Positives = 65/169 (38%), Gaps = 16/169 (9%)
Query: 20 DSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVR 79
D D RRD R RD RD R+ RD R+ R+L R R
Sbjct: 666 DRVDDRRDE-------RARERDRERERDRERERERERERD-REREKERELERERARERER 717
Query: 80 DVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDM-RDSRDPMYRREGSYDRYLRMDDYCR 138
+ RD RD R+ +R+ ++ R+ R+ R+ RE +R +
Sbjct: 718 EREKERDRERDRDRDHDRERERERERDREKEREREREERERERERERERERERERERERA 777
Query: 139 RKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEE 187
R+ D +R RD D + + R R KREE R + R +E
Sbjct: 778 RERDKERERQRDWED-------KDKGRDDRREKREEIREDRNPRDGHDE 819
Score = 41.2 bits (95), Expect = 0.003
Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 24/177 (13%)
Query: 20 DSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDI---------RDPRDLRDHRHSRDLR 70
D R RDR R R R+ R+ R++ R+ RD RD R
Sbjct: 673 DERARERDRERERDRERERERERERDREREKERELERERAREREREREKERDRERDRD-R 731
Query: 71 DHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRY 130
DH R RD R+ R+ + +R+ +R R+ R+ R+ +R
Sbjct: 732 DHDRERERERERDREKERE----REREERERERERERERERERERERERARERDKERERQ 787
Query: 131 LRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKRE---------ERRRE 178
+D + +DD ++ + + R P + ++K+R + E +RRRE
Sbjct: 788 RDWEDKDKGRDDRR-EKREEIREDRNPRDGHDERKSKKRYRNEGSPSPRQSPKRRRE 843
Score = 36.6 bits (83), Expect = 0.065
Identities = 60/221 (27%), Positives = 85/221 (38%), Gaps = 32/221 (14%)
Query: 9 SPTRRDPYGFGDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRD 68
SP+ + GD + R+ R GS RE R SR + R S D
Sbjct: 1208 SPSNDSAHRSGDDQSGRK-RVLHSGSRDREKTKSLEITGERKSRIDQLKRGEPSRSTSSD 1266
Query: 69 LRDHRDSRSVRDV----RDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRRE 124
+D R S R R V D RD RD+ + +R R+ RD+R + R+
Sbjct: 1267 RQDSRSHSSRRSSPESDRQVHSRSGSFDSRDRLQERDRYEHDRERERERRDTRQREWDRD 1326
Query: 125 GSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKRE--ERRREELYR 182
D+ R +D DR R+ + R +ER KR +R RE L
Sbjct: 1327 AD-------KDWPRNRDR---DRLRE------------RERERERDKRRDLDRERERLIS 1364
Query: 183 QYFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVGRKVRDL 223
E + R D +R + S I K+ + A+ G RDL
Sbjct: 1365 DSVERDRDR-DRDRTFESSQIESVKRCE--AKLEGEHERDL 1402
>gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]
Length = 2382
Score = 55.5 bits (132), Expect = 1e-07
Identities = 79/301 (26%), Positives = 118/301 (39%), Gaps = 54/301 (17%)
Query: 295 ERYKNECREKEREEIARQAAKMADEAILQER-ERGGPEEGVRGGHPPAIQSLINLLA--- 350
++ K + ++ E E + + E + QE E G EG AI+ ++L+
Sbjct: 510 KKLKGKYKDNEAIEFSFDLERDVPEDVAQEMVESGYVCEGDHKTMAKAIKDRVSLIKRKR 569
Query: 351 DNRYLTAEETDKIINYLRERKERLMRSSTDS-----LPGPISRQPLGATSGASLKTQPSS 405
+ R L EE +K K+++ +SS LP + P +T+ AS+ TQ
Sbjct: 570 EQRQLVREEQEKKKQEESSLKQQVEQSSASQTGIKQLPSASTGIPTASTTSASVSTQVEP 629
Query: 406 QPLQSGQVLPSATPTPSAPPTSQQELQAKILSLFNSGTV---------TANSSSASPSVA 456
+ P A Q + Q +S+ + GTV T + S+ +V+
Sbjct: 630 EE-------------PEADQHQQLQYQQPSISVLSDGTVDSGQGSSVFTESRVSSQQTVS 676
Query: 457 AGNTPNQNFSTAA-----NSQPQQRSQASGNQPPSILGQGGSAQNMGPRPGAPSQGLFGQ 511
G+ Q ST S Q +SQ G PPS + QG S G PS
Sbjct: 677 YGSQHEQAHSTGTVPGHIPSTVQAQSQPHGVYPPSSVAQGQS-------QGQPSS----- 724
Query: 512 PSSRLAPASNMTSQRPVSSTGINFDNPSVQKALDTLIQSGPALSHLVSQTTAQ-MGQPQA 570
SS +S+ Q P GI P Q +L Q+ S TTAQ + QPQA
Sbjct: 725 -SSLTGVSSSQPIQHPQQQQGIQQTAPPQQTVQYSLSQT----STSSEATTAQPVSQPQA 779
Query: 571 P 571
P
Sbjct: 780 P 780
Score = 37.7 bits (86), Expect = 0.029
Identities = 41/172 (23%), Positives = 59/172 (34%), Gaps = 28/172 (16%)
Query: 383 PGPISRQPLGATSGASLKTQPSSQPLQSGQVLPSATPTPSAPPTSQQ------------- 429
PG +S TSG T PS PL VLP T P+ S+Q
Sbjct: 1731 PGQVSTPVSTTTSGVKPGTAPSKPPLTKAPVLPVGTELPAGTLPSEQLPPFPGPSLTQSQ 1790
Query: 430 ----ELQAKILSLFNSGTVTANSSSASPSVAAGNTPNQNFSTAANSQPQQRSQASGNQPP 485
+L A++ + +T S+ S+AA T A +QPQ+ P
Sbjct: 1791 QPLEDLDAQLRRTLSPEMITVTSAVGPVSMAAPTA-----ITEAGTQPQKGVSQVKEGPV 1845
Query: 486 SILGQGGSAQNMG------PRPGAPSQGLFGQPSSRLAPASNMTSQRPVSST 531
G MG GA +G ++ + TS+ V S+
Sbjct: 1846 LATSSGAGVFKMGRFQVSVAADGAQKEGKNKSEDAKSVHFESSTSESSVLSS 1897
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 53.5 bits (127), Expect = 5e-07
Identities = 50/184 (27%), Positives = 65/184 (35%), Gaps = 24/184 (13%)
Query: 21 SRDSRRDRSPIRGSPRREPRDGRNGRD---------ARDSRDIRDPRDLRDHRHSRDLRD 71
+RD R RSP + R R RD ARD R P RDH SR
Sbjct: 410 ARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRSRSPNK 469
Query: 72 HRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRY----RDMRDSRDPMYRREGSY 127
RD R RD RD R R P +R R RD R S
Sbjct: 470 ARDRSRSRSPSKERDHSQLGSPSKERDHRRSRSPSKERQCRQSRSSSKERDHRRSRSPSK 529
Query: 128 DRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEE 187
+R +R+ ++ RD R P +++ K +RRR +R +E
Sbjct: 530 ER--------QRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDRRR---WRSPSKE 578
Query: 188 IQRR 191
+RR
Sbjct: 579 RERR 582
Score = 53.5 bits (127), Expect = 5e-07
Identities = 51/167 (30%), Positives = 60/167 (35%), Gaps = 8/167 (4%)
Query: 6 SRPSPTRRDPYGFGD---SRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRD 62
SR RD G RD RR RSP S R+ R R+ RD R R P R
Sbjct: 476 SRSPSKERDHSQLGSPSKERDHRRSRSP---SKERQCRQSRSSSKERDHRRSRSPSKERQ 532
Query: 63 HRHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYR 122
R SR RD R + R+ R R RD R R P +R R R SR
Sbjct: 533 RRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDRRRWRSPSKERER--RQSRSSSEE 590
Query: 123 REGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKER 169
R+ S R R S ++ G SQSR +
Sbjct: 591 RDHSRSRSPNKQSGYSRPRASSKEKAHSRSRTPSKEGNHSQSRTSSK 637
Score = 47.8 bits (112), Expect = 3e-05
Identities = 52/191 (27%), Positives = 63/191 (32%), Gaps = 24/191 (12%)
Query: 6 SRPSPTRRDPYGFGDSRDSRRDRSPIRGSPRREPRDGRNGRDA---------RDSRDIRD 56
+R R PY +RD R RSP + R RD RD +
Sbjct: 434 ARDCSRSRSPY---KARDRSRSRSPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGS 490
Query: 57 PRDLRDHRHSRD------LRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDR- 109
P RDHR SR R R S RD R R R R SR +RD R
Sbjct: 491 PSKERDHRRSRSPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRS 550
Query: 110 ---YRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRA 166
R+ R SR P R+ R+ R+ RD R P SR
Sbjct: 551 PSEEREHRQSRSPSKERDRR--RWRSPSKERERRQSRSSSEERDHSRSRSPNKQSGYSRP 608
Query: 167 KERLKREERRR 177
+ K + R
Sbjct: 609 RASSKEKAHSR 619
Score = 46.2 bits (108), Expect = 8e-05
Identities = 53/175 (30%), Positives = 71/175 (40%), Gaps = 10/175 (5%)
Query: 6 SRPSPTRRDPYGFGDSR-DSRRDRSPIRGSP--RREPRDGRNGRDARDSRDIRDPRDLRD 62
SR S RD G R +S R +S GSP +R+ R+ ARD R P RD
Sbjct: 368 SRSSSKERDHRGSSSPRKESGRSQS---GSPNKQRDHSRSRSPNKARDRSRSRSPYKARD 424
Query: 63 HRHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYR 122
SR RD R RD R +RD R P ++ RD SR P
Sbjct: 425 RSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRSRSP--NKARDRSRSRSPSKE 482
Query: 123 REGS-YDRYLRMDDYCRRKDDSYFDRYRDS-FDGRGPPGPESQSRAKERLKREER 175
R+ S + D+ R + S + R S + S+S +KER +R+ R
Sbjct: 483 RDHSQLGSPSKERDHRRSRSPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQSR 537
Score = 45.1 bits (105), Expect = 2e-04
Identities = 46/155 (29%), Positives = 58/155 (37%), Gaps = 13/155 (8%)
Query: 26 RDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDL---RDHRDSRSVRDVR 82
+ RS +G + + R R GR SR+ P R H HSR RDHR S S R
Sbjct: 331 QSRSHSKGKSQNQSRTPRRGRSHNWSRN---PSKERSHSHSRSSSKERDHRGSSS---PR 384
Query: 83 DVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDD 142
RD R P ++ RD SR P R+ S R C R
Sbjct: 385 KESGRSQSGSPNKQRDHSRSRSP--NKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRS 442
Query: 143 SYFDRYRDSFDGRGPPGPESQSRAKERLKREERRR 177
Y + RD R P SR++ K +R R
Sbjct: 443 PY--KARDRSRSRSPNKARDHSRSRSPNKARDRSR 475
Score = 35.8 bits (81), Expect = 0.11
Identities = 50/193 (25%), Positives = 62/193 (32%), Gaps = 24/193 (12%)
Query: 21 SRDSRRDRS---PIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHS---RDLRDHRD 74
SR RR RS S R R+ RD R PR S RDH
Sbjct: 344 SRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSR 403
Query: 75 SRSVRDVRD---------VRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREG 125
SRS RD RD R +RD R P + RD SR P R+
Sbjct: 404 SRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPY--KARDRSRSRSPNKARDH 461
Query: 126 SYDR-------YLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRRE 178
S R R + +D S D R P + + ++ + R
Sbjct: 462 SRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERDHRRSRSPSKERQCRQSRSSSKERDH 521
Query: 179 ELYRQYFEEIQRR 191
R +E QRR
Sbjct: 522 RRSRSPSKERQRR 534
Score = 34.3 bits (77), Expect = 0.32
Identities = 110/513 (21%), Positives = 174/513 (33%), Gaps = 90/513 (17%)
Query: 5 PSRP---SPTRRDPYGFGDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLR 61
PSR SPT ++ S R R P S R PR R+G R +R R
Sbjct: 251 PSREKSYSPTEMSSRVKSYNQASTRSR-PQSHSQSRSPRRSRSGSQKRTHSRVRSHSWKR 309
Query: 62 DH----------------RHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRD-SRDFRDQRD 104
+H RHS+ R H +S R R R R+ S++
Sbjct: 310 NHSRARSRTRKGILSQMGRHSQS-RSHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHS 368
Query: 105 PMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQS 164
+ RD R S P R+E R ++ RD R P +S
Sbjct: 369 RSSSKERDHRGSSSP--RKESG------------RSQSGSPNKQRDHSRSRSPNKARDRS 414
Query: 165 RAKERLKREERRREELYRQYFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVG-RKVRDL 223
R++ K +R R + + R + D S + +D++ S K RD
Sbjct: 415 RSRSPYKARDRSRSRSPNK-ARDCSRSRSPYKARDRSRSRSPNKARDHSRSRSPNKARDR 473
Query: 224 GMVVDLIFLNTEVSLSQALE-DVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMP 282
S S + E D S+ GSP +++ RS + + Q +
Sbjct: 474 SR-----------SRSPSKERDHSQLGSP-----SKERDHRRSRSPSKERQCRQSRSSSK 517
Query: 283 QADAMVLVARNYERYKNECREKEREEIARQAAKMADEAILQERERGGPEEGVRGGHPPAI 342
+ D + + ER + + R +E Q+ ++E ++ E R P+
Sbjct: 518 ERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDRRRWRSPS- 576
Query: 343 QSLINLLADNRYLTAEETDKIINYLRERKERLMRSSTDSLPGPISRQPLGATSGASLKTQ 402
+ER+ R RSS++ SR P SG S
Sbjct: 577 -------------------------KERERRQSRSSSEERDHSRSRSP-NKQSGYSRPRA 610
Query: 403 PSSQPLQSGQVLPSATPTPSAPPTSQQELQAKILSL------FNSGTVTAN-SSSASPSV 455
S + S PS S TS +E ++ S T T++ S + +PS
Sbjct: 611 SSKEKAHSRSRTPSKEGNHSQSRTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQNRTPSK 670
Query: 456 AAGNTPNQNFSTAANSQPQQRSQASGNQPPSIL 488
+ ++P+ F + + Q SQA + L
Sbjct: 671 TSSHSPS-TFPSGGQTLSQDDSQADATTSKATL 702
Score = 31.2 bits (69), Expect = 2.7
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 6/135 (4%)
Query: 393 ATSGASLKTQPSSQPLQSGQVLPSATPTPSAPPTSQQELQAKILSLFNSGTVTANSSSAS 452
A SG+S+ T P S + SATP S PT + ++S +S + + S+ +
Sbjct: 15 APSGSSMPTADPKPPA-SLKSTKSATPNRSLVPTKPATSRNSVMSPSSSKSTKSTSTKRA 73
Query: 453 PSVAAGNTPNQNFSTAANSQ-PQQRSQASGNQPPSILGQGGSAQNMGPRPGAPSQGLFGQ 511
PS N P+ + ++ P + S + S Q G + G G
Sbjct: 74 PS----NRPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCHQRRGTHSRGRTPGRRGS 129
Query: 512 PSSRLAPASNMTSQR 526
SS+ +P+ T R
Sbjct: 130 RSSKRSPSRASTPGR 144
Score = 31.2 bits (69), Expect = 2.7
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 376 RSSTDSLPGPIS----RQPLGATSGAS--LKTQPSSQPLQSGQVLPSATPTPSAPPTSQQ 429
R +DS P +S R P G+ G S L PS+ Q+ +PS + + P+S +
Sbjct: 181 RERSDSQPRNLSKKSYRPPGGSGIGRSSELAVTPSTAKCQTPTGIPSKEKSDNPSPSSSR 240
Query: 430 ELQAKILSLFNSGTVTANSSSASPSVAAGNTPNQNFSTAANSQPQQRSQA 479
++++ + + + S SP+ + + N + S+PQ SQ+
Sbjct: 241 KVKS-----YGQMIIPSREKSYSPTEMSSRVKSYN-QASTRSRPQSHSQS 284
Score = 30.4 bits (67), Expect = 4.7
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 395 SGASLKTQPSSQPLQSGQVLPSATPTPSAPPTSQQELQAKILSLFNSGTVTANSSSASPS 454
S ++PS SG +P+A P P A S + SL + T+ +S SPS
Sbjct: 2 SSPKRSSKPSMSLAPSGSSMPTADPKPPASLKSTKSATPN-RSLVPTKPATSRNSVMSPS 60
Query: 455 VAAGNTPNQNFSTAANSQPQQRSQ 478
++ +T + + A +++P RS+
Sbjct: 61 -SSKSTKSTSTKRAPSNRPSSRSR 83
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 51.6 bits (122), Expect = 2e-06
Identities = 58/194 (29%), Positives = 72/194 (37%), Gaps = 35/194 (18%)
Query: 6 SRPSPTRRDPYGFGDSRDSRRDRSPIRGSPRREPR------------DGRNGRDARDSRD 53
S PS R G G R R G PRREP DG + +D+ SRD
Sbjct: 165 SAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRD 224
Query: 54 I---RDPRD---------LRDHRHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRD 101
RD RD RD+ HS RD SR D RD+ D +RD
Sbjct: 225 YPSSRDTRDYAPPPRDYTYRDYGHSSS-RDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRD 283
Query: 102 QRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPE 161
Y+ Y + R S P SY R DDY +D Y S D +
Sbjct: 284 S----YESYGNSR-SAPPTRGPPPSYGGSSRYDDYSSSRDG-----YGGSRDSYSSSRSD 333
Query: 162 SQSRAKERLKREER 175
S ++R+ R+ER
Sbjct: 334 LYSSGRDRVGRQER 347
>gi|239757964 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 51.2 bits (121), Expect = 3e-06
Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 3/168 (1%)
Query: 22 RDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 81
RD R++ R R R+ RD R+ + +D R + R+ R +
Sbjct: 123 RDREREKQKGRERERDRGRERERDRDREKERERQTEKDRDGQRETETERERDREREKQKE 182
Query: 82 RDVRDLRDFRDLRDSRDFRD-QRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRK 140
R+ RD + RD+ R+ Q D DR R + R REG + R + R
Sbjct: 183 RETERDRDRQ--RDTEKERERQTDRERDRQRKTQTERQRETDREGERETDRRRERQRDRD 240
Query: 141 DDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEI 188
DR RD + R + + + ++ K+EE+RRE+ R++ E I
Sbjct: 241 RGKERDRERDRKEERKKERKKERKKERKEKKKEEKRREDKKRKWGEGI 288
Score = 47.0 bits (110), Expect = 5e-05
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 11/176 (6%)
Query: 26 RDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDVRDVR 85
RDR R R+ + GR+ R RD RD R+ + +D R+ R
Sbjct: 113 RDREKQTEIERDREREKQKGRERERDRGRERERD-RDREKERERQTEKDRDGQRETETER 171
Query: 86 DLRDFRDLRDSRDFRDQRDPMYD--RYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDS 143
+ R+ + R+ RD D + R+ + R+ +R+ +R D R+ D
Sbjct: 172 ERDREREKQKERETERDRDRQRDTEKERERQTDRERDRQRKTQTERQRETDREGERETDR 231
Query: 144 YFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVD 199
+R RD G+ R +ER ++EER++E + E +++ + +R D
Sbjct: 232 RRERQRDRDRGK--------ERDRERDRKEERKKERKKERKKERKEKKKEEKRRED 279
Score = 43.5 bits (101), Expect = 5e-04
Identities = 45/194 (23%), Positives = 77/194 (39%), Gaps = 22/194 (11%)
Query: 22 RDSRRDRSPIRGSPRRE-----------------PRDGRNGRDARDSRDIRDPRDLRDHR 64
RD R R R +E R+ + GR+ R RD RD
Sbjct: 92 RDRDRKRDRERRRKEKETNRNRDREKQTEIERDREREKQKGRERERDRGRERERD-RDRE 150
Query: 65 HSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYD--RYRDMRDSRDPMYR 122
R+ + +D R+ R+ R+ + R+ RD D + R+ + R+ +
Sbjct: 151 KERERQTEKDRDGQRETETERERDREREKQKERETERDRDRQRDTEKERERQTDRERDRQ 210
Query: 123 REGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYR 182
R+ +R D R+ D +R RD RG + R +ER K ++ R++ +
Sbjct: 211 RKTQTERQRETDREGERETDRRRERQRDR--DRGKERDRERDRKEERKKERKKERKKERK 268
Query: 183 QYFEEIQRRFDAER 196
+ +E +RR D +R
Sbjct: 269 EKKKEEKRREDKKR 282
Score = 38.9 bits (89), Expect = 0.013
Identities = 43/180 (23%), Positives = 68/180 (37%), Gaps = 12/180 (6%)
Query: 20 DSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVR 79
D D +R+R +R +E RD RD R ++ RD ++ R+ +
Sbjct: 73 DGDDRQRERDRVREKTEKE-RDRDRKRDRERRRKEKETNRNRDREKQTEIERDREREKQK 131
Query: 80 DVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRR 139
RD R+ RD +R R RD E +R + R
Sbjct: 132 GRERERDR--------GRERERDRDREKERERQTEKDRDGQRETETERERDREREKQKER 183
Query: 140 KDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVD 199
+ + DR RD+ R + R ++R + ER+R E R+ E RR + +R D
Sbjct: 184 ETERDRDRQRDTEKER--ERQTDRERDRQRKTQTERQR-ETDREGERETDRRRERQRDRD 240
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 48.1 bits (113), Expect = 2e-05
Identities = 55/177 (31%), Positives = 69/177 (38%), Gaps = 41/177 (23%)
Query: 8 PSPTRRDPYGFGDSRDSRRDRSPIR-------GSPRREP------------------RDG 42
PSP R P G S R+P+ G PRREP +D
Sbjct: 160 PSPKRSAPSGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDS 219
Query: 43 RNGRDARDSRDIRD----PRD--LRDHRHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDS 96
+ RD SRD RD PRD RD+ HS RD SR D RD+ D
Sbjct: 220 YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSS-RDDYPSRGYGDRDGYGRDRDYSDHPSG 278
Query: 97 RDFRDQRDPMYDRYRDMRDSRDPMYR-REGSYDRYLRMDDYCRRKDDSYFDRYRDSF 152
+RD Y+ Y + R + P+ R SY R DDY +D + RDS+
Sbjct: 279 GSYRDS----YESYGNSRSA--PLTRGPPPSYGGSSRYDDYSSSRDG--YGGSRDSY 327
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 48.1 bits (113), Expect = 2e-05
Identities = 55/177 (31%), Positives = 69/177 (38%), Gaps = 41/177 (23%)
Query: 8 PSPTRRDPYGFGDSRDSRRDRSPIR-------GSPRREP------------------RDG 42
PSP R P G S R+P+ G PRREP +D
Sbjct: 160 PSPKRSAPSGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDS 219
Query: 43 RNGRDARDSRDIRD----PRD--LRDHRHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDS 96
+ RD SRD RD PRD RD+ HS RD SR D RD+ D
Sbjct: 220 YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSS-RDDYPSRGYGDRDGYGRDRDYSDHPSG 278
Query: 97 RDFRDQRDPMYDRYRDMRDSRDPMYR-REGSYDRYLRMDDYCRRKDDSYFDRYRDSF 152
+RD Y+ Y + R + P+ R SY R DDY +D + RDS+
Sbjct: 279 GSYRDS----YESYGNSRSA--PLTRGPPPSYGGSSRYDDYSSSRDG--YGGSRDSY 327
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 47.8 bits (112), Expect = 3e-05
Identities = 50/192 (26%), Positives = 71/192 (36%), Gaps = 5/192 (2%)
Query: 26 RDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDVRDVR 85
R+R R RRE R R+ R+ RD R RD RD R
Sbjct: 312 RERERERERERREREREREREREREKEKERERERERDRDRDRTKERDRDRDRERDRDRDR 371
Query: 86 DLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDSYF 145
+ R+ SR RD +R R+ R+ RE +R + R+ D
Sbjct: 372 ERSSDRNKDRSRSREKSRDREREREREREREREREREREREREREREREREREREKDKKR 431
Query: 146 DRYRDSFDGRGPPGPESQSRAK-----ERLKREERRREELYRQYFEEIQRRFDAERPVDC 200
DR D D E + R K ERLK E R + R+Y +E +R + R +
Sbjct: 432 DREEDEEDAYERRKLERKLREKEAAYQERLKNWEIRERKKTREYEKEAEREEERRREMAK 491
Query: 201 SVIVVNKQTKDY 212
+ + +DY
Sbjct: 492 EAKRLKEFLEDY 503
Score = 41.2 bits (95), Expect = 0.003
Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 11/190 (5%)
Query: 4 APSRPSP--TRRDPYGFGDSRDSR----RDRSPIRGSPRREPRDGRNGRDARDSRDIRDP 57
AP P P T+ D D R R+ S R + ++ + G+ ++ ++I
Sbjct: 251 APLIPYPLITKEDINAIEMEEDKRDLISREISKFRDTHKKLEEE--KGKKEKERQEIEKE 308
Query: 58 RDLRDHRHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSR 117
R R+ R+ R+ R+ R+ R+ R+ RD RD RD +R RD R
Sbjct: 309 RRERERERERE-RERREREREREREREREKEKERERERERD-RD-RDRTKERDRDRDRER 365
Query: 118 DPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRR 177
D RE S DR + D +R R+ R + R +ER + ER R
Sbjct: 366 DRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERERERERERERERER 425
Query: 178 EELYRQYFEE 187
E+ ++ EE
Sbjct: 426 EKDKKRDREE 435
Score = 40.4 bits (93), Expect = 0.004
Identities = 42/201 (20%), Positives = 78/201 (38%), Gaps = 11/201 (5%)
Query: 22 RDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 81
RD+ + +G +E ++ R R+ R+ R+ R+ R+ R+ R+
Sbjct: 285 RDTHKKLEEEKGKKEKERQEIEKERRERERERERE-RERREREREREREREREKEKERER 343
Query: 82 RDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKD 141
RD R RD +RD DR R ++D RE S DR + R+
Sbjct: 344 ERERDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERER 403
Query: 142 DSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVDCS 201
+ +R R+ + R +ER + E+ ++ + E+ R ER +
Sbjct: 404 ERERERERE----------REREREREREREREKDKKRDREEDEEDAYERRKLERKLREK 453
Query: 202 VIVVNKQTKDYAESVGRKVRD 222
++ K++ +K R+
Sbjct: 454 EAAYQERLKNWEIRERKKTRE 474
Score = 37.4 bits (85), Expect = 0.038
Identities = 39/198 (19%), Positives = 74/198 (37%), Gaps = 37/198 (18%)
Query: 21 SRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRD 80
SR+ RDR R R R+ R+ R+ R+ + + R+ + +
Sbjct: 384 SREKSRDREREREREREREREREREREREREREREREREREREKDKKRDREEDEEDAYER 443
Query: 81 VRDVRDLR-------------DFRDLRDSRDFRDQRDPMYDRYRDMR------------- 114
+ R LR + R+ + +R++ + + +R R+M
Sbjct: 444 RKLERKLREKEAAYQERLKNWEIRERKKTREYEKEAEREEERRREMAKEAKRLKEFLEDY 503
Query: 115 --DSRDPMYRREGSYDRYLR-------MDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSR 165
D DP Y R + + LR D+ R+++ + R G P P+++ +
Sbjct: 504 DDDRDDPKYYRGSALQKRLRDREKEMEADERDRKREKEELEEIRQRLLAEGHPDPDAELQ 563
Query: 166 AKERLKREERRREELYRQ 183
E + ERRR+ +Q
Sbjct: 564 RME--QEAERRRQPQIKQ 579
Score = 35.4 bits (80), Expect = 0.14
Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 8/185 (4%)
Query: 22 RDSRRDRSPIRGSPRREPRDGRNGRDARDSRD---IRDPRDLRDHRHSRDLRDHRDSRSV 78
RD RDR+ R R RD R+ R+ R RD R+ R+
Sbjct: 347 RDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERE 406
Query: 79 RDVRDVRDLRDFRDLRDSRDF---RDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDD 135
R+ R+ R+ R+ RD+ + D Y + R + +E +Y L+ +
Sbjct: 407 REREREREREREREREREREKDKKRDREEDEEDAY-ERRKLERKLREKEAAYQERLKNWE 465
Query: 136 YCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRRF-DA 194
RK +++ + + R + R KE L+ + R++ +Q+R D
Sbjct: 466 IRERKKTREYEKEAEREEERRREMAKEAKRLKEFLEDYDDDRDDPKYYRGSALQKRLRDR 525
Query: 195 ERPVD 199
E+ ++
Sbjct: 526 EKEME 530
Score = 34.7 bits (78), Expect = 0.25
Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 42/200 (21%)
Query: 22 RDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRH-SRDLRDHRDSRSVR- 79
R+ R+R R R R+ +D + R+ D D + R R LR+ + R
Sbjct: 403 REREREREREREREREREREREREKDKKRDRE-EDEEDAYERRKLERKLREKEAAYQERL 461
Query: 80 ---DVRDVRDLRDF-----RDLRDSRDFRDQRDPMYDRYRDMRDSRD-PMYRREGSYDRY 130
++R+ + R++ R+ R+ + + + D D RD P Y R + +
Sbjct: 462 KNWEIRERKKTREYEKEAEREEERRREMAKEAKRLKEFLEDYDDDRDDPKYYRGSALQKR 521
Query: 131 LR-------MDDYCRRKDDSYFDRYRDSFDGRGPPGP----------------------- 160
LR D+ R+++ + R G P P
Sbjct: 522 LRDREKEMEADERDRKREKEELEEIRQRLLAEGHPDPDAELQRMEQEAERRRQPQIKQEP 581
Query: 161 ESQSRAKERLKREERRREEL 180
ES+ +E+ ++EE+R E +
Sbjct: 582 ESEEEEEEKQEKEEKREEPM 601
Score = 30.8 bits (68), Expect = 3.6
Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 22/167 (13%)
Query: 167 KERLKREERRREELYRQYFEEIQRRFDAE--RPVDCSVIVVNKQTKDYAESVGRKVRDLG 224
+E L E +RR+++ + E + R + +E P S K+ K+ E + R+
Sbjct: 193 EEALDEETKRRDQMIKGAIEVLIREYSSELNAPSQESDSHPRKKKKEKKEDIFRRFPVAP 252
Query: 225 MVVDLIFLNTEVSLSQALED----VSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRN 280
++ + +++ + ED +SR S F H+ +E +
Sbjct: 253 LIPYPLITKEDINAIEMEEDKRDLISREISKF-------RDTHKKL---------EEEKG 296
Query: 281 MPQADAMVLVARNYERYKNECREKEREEIARQAAKMADEAILQERER 327
+ + + ER + RE+ER E R+ + + +ERER
Sbjct: 297 KKEKERQEIEKERRERERERERERERREREREREREREREKEKERER 343
>gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo
sapiens]
Length = 558
Score = 47.8 bits (112), Expect = 3e-05
Identities = 53/203 (26%), Positives = 79/203 (38%), Gaps = 27/203 (13%)
Query: 18 FGDSRDSRRDRSPI--RGSPRRE----PRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRD 71
F R RSP RG R R R D + RD +H RD R
Sbjct: 280 FKHHRSQNHSRSPSEERGHSTRHHTKGSRTSRGHEKREDQHQQKQSRDQENHYTDRDYRK 339
Query: 72 HRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYL 131
RDS R+ RDS R +++ R RD R+ D +++RE ++Y
Sbjct: 340 ERDSHRHREASH----------RDSHWKRHEQEDK-PRARDQRERSDRVWKREKDREKYS 388
Query: 132 RMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRR 191
+ + + +D D+ R S G E +S+AKE + + R E +Y + +R
Sbjct: 389 QRE---QERDRQQNDQNRPSEKGE----KEEKSKAKEEHMKVRKERYENNDKYRDREKRE 441
Query: 192 F---DAERPVDCSVIVVNKQTKD 211
+ER D N + KD
Sbjct: 442 VGVQSSERNQDRKESSPNSRAKD 464
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 47.4 bits (111), Expect = 4e-05
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 7/159 (4%)
Query: 22 RDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 81
+D RR +SP + R + R+ R R SRD R +D R+ ++ +D R+
Sbjct: 346 KDRRRSKSPHK--KRSKSRERRKSRSRSHSRDKR--KDTREKIKEKERVKEKDREKERER 401
Query: 82 RDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKD 141
R+ R RD ++D D+ +D R+ + ++ ++ D R+
Sbjct: 402 EKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREK 461
Query: 142 D---SYFDRYRDSFDGRGPPGPESQSRAKERLKREERRR 177
D ++ + R PP + SR RE RRR
Sbjct: 462 DRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRR 500
Score = 37.7 bits (86), Expect = 0.029
Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 18/168 (10%)
Query: 24 SRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDVRD 83
SRR RS + R R +D R S+ H+ R+ R SRS RD
Sbjct: 324 SRRKRSQSKHRSRSHNRSRSRQKDRRRSKS--------PHKKRSKSRERRKSRSRSHSRD 375
Query: 84 VRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDS 143
R +D+R+ +++ + ++ R+ R+ RE +R D R+ D
Sbjct: 376 KR--------KDTREKIKEKERVKEKDREKEREREK--EREKEKERGKNKDRDKEREKDR 425
Query: 144 YFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRR 191
D+ +D R + + + KE+ + +E+ RE+ + +E +++
Sbjct: 426 EKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKK 473
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 47.4 bits (111), Expect = 4e-05
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 7/159 (4%)
Query: 22 RDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 81
+D RR +SP + R + R+ R R SRD R +D R+ ++ +D R+
Sbjct: 230 KDRRRSKSPHK--KRSKSRERRKSRSRSHSRDKR--KDTREKIKEKERVKEKDREKERER 285
Query: 82 RDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKD 141
R+ R RD ++D D+ +D R+ + ++ ++ D R+
Sbjct: 286 EKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREK 345
Query: 142 D---SYFDRYRDSFDGRGPPGPESQSRAKERLKREERRR 177
D ++ + R PP + SR RE RRR
Sbjct: 346 DRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRR 384
Score = 37.7 bits (86), Expect = 0.029
Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 18/168 (10%)
Query: 24 SRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDVRD 83
SRR RS + R R +D R S+ H+ R+ R SRS RD
Sbjct: 208 SRRKRSQSKHRSRSHNRSRSRQKDRRRSKS--------PHKKRSKSRERRKSRSRSHSRD 259
Query: 84 VRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDS 143
R +D+R+ +++ + ++ R+ R+ RE +R D R+ D
Sbjct: 260 KR--------KDTREKIKEKERVKEKDREKEREREK--EREKEKERGKNKDRDKEREKDR 309
Query: 144 YFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRR 191
D+ +D R + + + KE+ + +E+ RE+ + +E +++
Sbjct: 310 EKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKK 357
>gi|4503509 eukaryotic translation initiation factor 3, subunit 10
theta, 150/170kDa [Homo sapiens]
Length = 1382
Score = 47.0 bits (110), Expect = 5e-05
Identities = 62/181 (34%), Positives = 75/181 (41%), Gaps = 29/181 (16%)
Query: 6 SRPSPTRRDPYGFGDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRH 65
SRPS R RD++ DR P RE RD D D R PRD R
Sbjct: 1195 SRPSEEREWDREKERDRDNQ-DREENDKDPERE-RDRERDVDREDR--FRRPRDEGGWRR 1250
Query: 66 --SRDLRDHRDSRSVRDVRDVRDLR----DFRDLRDSRDFRDQRDPMYDRYRDMRDSRDP 119
+ + RDS S RD RD D R D RDLR+ RD RD RD R P
Sbjct: 1251 GPAEESSSWRDS-SRRDDRDRDDRRRERDDRRDLRERRDLRDD-----------RDRRGP 1298
Query: 120 MYRRE-GSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRRE 178
R E + R DD RKDD +R R PP S+ R ++R + E +E
Sbjct: 1299 PLRSEREEVSSWRRADD---RKDDRVEER---DPPRRVPPPALSRDRERDRDREREGEKE 1352
Query: 179 E 179
+
Sbjct: 1353 K 1353
Score = 43.9 bits (102), Expect = 4e-04
Identities = 59/187 (31%), Positives = 73/187 (39%), Gaps = 19/187 (10%)
Query: 19 GDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHR-HSRDLRDHRDSRS 77
G R DR P RG E RN D R R R L D R R + D R R
Sbjct: 1037 GPRRGMDDDRGPRRGGADDERSSWRNADDDRGPR-----RGLDDDRGPRRGMDDDRGPR- 1090
Query: 78 VRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDD-- 135
R + D R R R + D R R D +R+ D R P E + MDD
Sbjct: 1091 -RGMDDDRGPR--RGMDDDRGPRRGLDDDRGPWRNADDDRIPRRGAEDDRGPWRNMDDDR 1147
Query: 136 YCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELY---RQYFEEIQRRF 192
RR DD F R D D R PGP + +E+ REE + R+ +R +
Sbjct: 1148 LSRRADDDRFPRRGD--DSR--PGPWRPLVKPGGWREKEKAREESWGPPRESRPSEEREW 1203
Query: 193 DAERPVD 199
D E+ D
Sbjct: 1204 DREKERD 1210
Score = 32.0 bits (71), Expect = 1.6
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 128 DRYLRMDDYCR-RKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREER-RREELYRQYF 185
+R+ R+++ R RK++ YR+ + E + +E +R ER +REE R+Y
Sbjct: 786 ERHNRLEERKRQRKEERRITYYREKEEEEQRRAEEQMLKEREERERAERAKREEELREYQ 845
Query: 186 EEIQRRFDAER 196
E +++ + ER
Sbjct: 846 ERVKKLEEVER 856
Score = 31.2 bits (69), Expect = 2.7
Identities = 57/179 (31%), Positives = 66/179 (36%), Gaps = 22/179 (12%)
Query: 7 RPSPTRRDPYGFGDSRDSRR----DRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRD 62
RP R G D R RR DR RG+ P RN D R R I D D +
Sbjct: 951 RPDDDRVPRRGMDDDRGPRRGPEEDRFSRRGADDDRP-SWRNTDDDRPPRRIAD-EDRGN 1008
Query: 63 HRHSRDLRDHR-----DSRSVRDVRDVRDLRDFRDLRDSR-DFRDQRDPMYDRYRDMRDS 116
RH+ D R R D S R + R R R + D R R D +R+ D
Sbjct: 1009 WRHADDDRPPRRGLDEDRGSWRTADEDRGPR--RGMDDDRGPRRGGADDERSSWRNADDD 1066
Query: 117 RDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREER 175
R P RR DR R R DD R R D RGP R R ++R
Sbjct: 1067 RGP--RRGLDDDRGPR-----RGMDDDRGPR-RGMDDDRGPRRGMDDDRGPRRGLDDDR 1117
>gi|239747891 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 46.6 bits (109), Expect = 6e-05
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 19/175 (10%)
Query: 22 RDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 81
R R R RG RD + R+ + R+ R + RD RD + R+
Sbjct: 3 RQRERKRETDRGKETERERDRQRERENQTERENRHRQ--RDRHRERDRQTDREKE----- 55
Query: 82 RDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKD 141
R+ + RD + QR+ +R + + R R+ DR D RK
Sbjct: 56 ---------RERQKERDRQRQRERETERETERQRERQRQRERKRQTDRERDKDRDRERKR 106
Query: 142 DSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAER 196
++ +R R+ GR + R +ER ++ +R RE RQ E +R D ER
Sbjct: 107 ETDRNRERNRKGGRERDKQTERERDRERERQRQRERE---RQRQRERKRETDRER 158
Score = 41.6 bits (96), Expect = 0.002
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 11/183 (6%)
Query: 22 RDSRRDRSPIRGSPRREPRDGRNG-RDARDSRDIRDPRDL-RDHRHSRDLRDHRDSRSVR 79
+++ R+R R + R+ R+ RD RD + R+ R+ + RD + R+ + R
Sbjct: 15 KETERERDRQRERENQTERENRHRQRDRHRERDRQTDREKERERQKERDRQRQRERETER 74
Query: 80 DVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRR 139
+ R+ + R+ + D +RD DR R R+ R+G +R D R
Sbjct: 75 ETERQRERQRQRERKRQTD--RERDKDRDRERKRETDRNRERNRKGGRER----DKQTER 128
Query: 140 KDDSYFDRYRDSFDGRGPPGPESQSRAKER---LKREERRREELYRQYFEEIQRRFDAER 196
+ D +R R R + +ER +REER++E + E +++ + +R
Sbjct: 129 ERDRERERQRQRERERQRQRERKRETDRERQRWAEREERKKERKKERKKERKEKKKEEKR 188
Query: 197 PVD 199
D
Sbjct: 189 RED 191
Score = 40.0 bits (92), Expect = 0.006
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 12/170 (7%)
Query: 22 RDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDL---RDHRHSRDLRDHRDSRSV 78
RD R+R R + R + R+ + RD + R+ R+ R+ + R+ + D
Sbjct: 40 RDRHRERD--RQTDREKERERQKERDRQRQRERETERETERQRERQRQRERKRQTDRERD 97
Query: 79 RDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCR 138
+D R R+ +R +RD +R RD R RE R +
Sbjct: 98 KDRDRERKRETDRNRERNRKGGRERDKQTERERDRERERQRQRERERQRQRERK------ 151
Query: 139 RKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEI 188
R+ D R+ + + + E + KE+ K E+RRE+ R++ E I
Sbjct: 152 RETDRERQRWAEREERKKERKKERKKERKEKKKE-EKRREDKKRKWGEGI 200
>gi|169167715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 45.8 bits (107), Expect = 1e-04
Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 6/184 (3%)
Query: 22 RDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 81
R+ R R + R + R+ RD + RD R+ + RD R+ RD + +
Sbjct: 64 RERERQRKRAKERHREKDREIEKDRDRQRKRD-RERQRWRDRDRKRERWGDRDRETETER 122
Query: 82 RDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRRE-GSYDRYLRMDDYCRRK 140
++ R+ + R R+ + QR+ D+ R++ +D RE G +RY + +++
Sbjct: 123 QEERERQRDRKREKDRERQRQREIGIDKDREIETEKDRDREREMGETERYRDRERERQKQ 182
Query: 141 DDSYFDRYRD---SFDGRGPPGPESQSRAKERLK-REERRREELYRQYFEEIQRRFDAER 196
++ DR R+ + R + R K+R + RE R + R + ++ D ++
Sbjct: 183 RETRRDRDRERQREKEDRERDRDRQKEREKDRYRERETGRDRDKERDRERQREKDRDRQK 242
Query: 197 PVDC 200
+DC
Sbjct: 243 AIDC 246
Score = 33.5 bits (75), Expect = 0.55
Identities = 38/141 (26%), Positives = 52/141 (36%), Gaps = 2/141 (1%)
Query: 57 PRDLRDHRHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDS 116
P +R+ R+ R R R++ RD + RD QR DR R+
Sbjct: 54 PAIIRERERQRERERQRKRAKERHREKDREIEKDRDRQRKRDRERQRWRDRDRKRERWGD 113
Query: 117 RDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFD-GRGPPGPESQSRAKERLKREER 175
RD E +R R D R KD + D R + + R +E + E
Sbjct: 114 RDRETETERQEERE-RQRDRKREKDRERQRQREIGIDKDREIETEKDRDREREMGETERY 172
Query: 176 RREELYRQYFEEIQRRFDAER 196
R E RQ E +R D ER
Sbjct: 173 RDRERERQKQRETRRDRDRER 193
Score = 32.0 bits (71), Expect = 1.6
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Query: 108 DRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAK 167
+R R+ R R DR + D +RK D R+RD R G +
Sbjct: 61 ERQRERERQRKRAKERHREKDREIEKDRDRQRKRDRERQRWRDRDRKRERWGDRDRETET 120
Query: 168 ERLKREERRREELYRQYFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVGRKVR 221
ER + ER+R+ R+ ++ +R+ E +D + ++ +D +G R
Sbjct: 121 ERQEERERQRD---RKREKDRERQRQREIGIDKDREIETEKDRDREREMGETER 171
>gi|50053795 eukaryotic translation initiation factor 4B [Homo
sapiens]
Length = 611
Score = 45.8 bits (107), Expect = 1e-04
Identities = 57/196 (29%), Positives = 73/196 (37%), Gaps = 13/196 (6%)
Query: 10 PTRRDPYGFGDSRDSRRDRSPIRGSPRREPRDG-RNGRDARDSRDIRDPRDLRDHRHSRD 68
P RR FGD R D R R RDG R D RD D R RD+ D
Sbjct: 212 PPRRGDDSFGDKYRDRYDSDRYRDGYRDGYRDGPRRDMDRYGGRDRYDDRGSRDYDRGYD 271
Query: 69 LRDHRDSRSV-------RDVRDVRD-LRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPM 120
R R+ D R D D D RD R + + D D YR RD R P
Sbjct: 272 SRIGSGRRAFGSGYRRDDDYRGGGDRYEDRYDRRDDRSWSSRDDYSRDDYR--RDDRGPP 329
Query: 121 YRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREEL 180
R + + + S R F G P ++ +R +E +R ++ +E+L
Sbjct: 330 QRPKLNLKPRSTPKEDDSSASTSQSTRAASIFGGAKP--VDTAAREREVEERLQKEQEKL 387
Query: 181 YRQYFEEIQRRFDAER 196
RQ E R ER
Sbjct: 388 QRQLDEPKLERRPRER 403
Score = 36.6 bits (83), Expect = 0.065
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 89 DFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYC-RRKDDSYFDR 147
D D +D RD R DR RD D D +R + D + DDY RR DDS+ D+
Sbjct: 169 DVADQAQDKD-RDDRSFGRDRNRDS-DKTDTDWRARPATDSF---DDYPPRRGDDSFGDK 223
Query: 148 YRDSFD 153
YRD +D
Sbjct: 224 YRDRYD 229
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 45.8 bits (107), Expect = 1e-04
Identities = 55/170 (32%), Positives = 74/170 (43%), Gaps = 23/170 (13%)
Query: 19 GDSRDSRRDRSPIRGSPRREPRD-GRNGRDARDSRDIRDPRDL---------RDHRHSRD 68
G S RR+ P R P PRD G + RD SRD R+PR RD+ HS
Sbjct: 189 GYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYREPRGFAPSPGEYTHRDYGHS-S 247
Query: 69 LRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYD 128
+RD R D RD RD RD D R+P ++ Y ++R + P SY
Sbjct: 248 VRDDCPLRGYSD-RDGYGGRD-RDYGDHLSRGSHREP-FESYGELRGAA-PGRGTPPSYG 303
Query: 129 RYLRMDDYCRRKDDSYF---DRYRDSFDGRGPPGPESQSRAKERLKREER 175
R ++Y D+Y D Y S+ GR + SR + R+ R +R
Sbjct: 304 GGGRYEEYRGYSPDAYSGGRDSYSSSY-GRS----DRYSRGRHRVGRPDR 348
>gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]
Length = 818
Score = 45.8 bits (107), Expect = 1e-04
Identities = 55/212 (25%), Positives = 88/212 (41%), Gaps = 37/212 (17%)
Query: 378 STDSLPGPISRQPLGATSG-ASLKTQPSSQPLQSGQVLPSATPTPSAPPTSQ-----QEL 431
S + PG + G++ G A TQP +QP P A+P+PS PP Q +++
Sbjct: 592 SKELSPGSAQKGSPGSSQGTACAGTQPGAQP----GAQPGASPSPSQPPADQSPHTLRKV 647
Query: 432 QAKILSL-----FNSGTVTANSSSASPS-VAAGNTPNQNFSTAANSQPQQRSQASGN--- 482
K+ + F A+ S+ PS V+ TP S S PQ S ASG
Sbjct: 648 SKKLAPIPPKVPFGQPGAMADQSAGQPSPVSLSPTPPSTPSPYGLSYPQGYSLASGQLSP 707
Query: 483 ------QPPSILGQGGSAQNMGPRP-GAPSQGLFGQPSSRLAPASNMTSQRP-------- 527
PS+ S P+P P+ P+ L+ +S +++ P
Sbjct: 708 AAAPPLASPSVFTSTLSKSRPTPKPRQRPTLPPPQPPTVNLSASSPQSTEAPMLDGMSPG 767
Query: 528 --VSSTGINFDNPSVQKALDTLIQSGPALSHL 557
+S+ ++FD PS+ L + ++ P L H+
Sbjct: 768 ESMSTDLVHFDIPSIHIELGSTLRLSP-LEHM 798
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 45.1 bits (105), Expect = 2e-04
Identities = 53/215 (24%), Positives = 80/215 (37%), Gaps = 31/215 (14%)
Query: 370 RKERLM----RSSTDSLPGPISRQPLGATSGASLKTQPSSQPLQSGQVLPSATP-TPSAP 424
RKE+L R+++ L G +S P A L + P+ Q+G+ LP P + AP
Sbjct: 2229 RKEKLWESPGRATSPPLAGAVS--PSVAVRATGLSSTPTGDEAQAGRGLPGPDPQSRGAP 2286
Query: 425 PTSQQELQAKILSLFNSGTVTANSSSASPSVAA--GNTPNQNFSTAANSQPQQRSQASGN 482
P + N + SS SPS A G+ Q TA ++P A +
Sbjct: 2287 PHT------------NPDRMPRGHSSYSPSNTARLGHREGQAV-TAVPTEPPTLQGAGPD 2333
Query: 483 QPPSILGQGGSAQNMGPRPGAPSQGLFGQPSSRLAPASNMTSQRPVSSTGINFDNPSVQK 542
P + G+ G++ PG P G G + + STG+ +
Sbjct: 2334 SPACLEGEMGTSSKEPEDPGTPETGRSG---------ATKMPRVTCPSTGLGLGRTTAPS 2384
Query: 543 ALDTLIQSGPALSHLVSQTTAQMGQPQAPMGSYQR 577
+ + QS SH + G P P QR
Sbjct: 2385 STASDFQSDSPQSHRNASHQTPQGDPLGPQDLKQR 2419
Score = 31.2 bits (69), Expect = 2.7
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 9/143 (6%)
Query: 400 KTQPSSQPLQSGQVLPSATPTPSAPPTSQQELQ--AKILSLFNSGTVTANSSSASPSVAA 457
+ + PL++G LPS TP P S +++ AK+ SL S +P +
Sbjct: 804 QAEGKDDPLRTG-FLPSLAATPFPLPASDLDMEDDAKLDSLITEALNGMEYQSDNPEI-- 860
Query: 458 GNTPNQNFSTAANSQPQ-QRSQASGNQPPSILGQGGSAQNMGPRPGAPSQGLFGQPSSRL 516
+ A+ +P R +SG+ S G ++ P P A +P R
Sbjct: 861 ---DSSFIDVFADEEPSGPRGPSSGHPLKSKAGVTPESKAPPPLPAATPDPQTPRPGDRG 917
Query: 517 APASNMTSQRPVSSTGINFDNPS 539
PA R + D PS
Sbjct: 918 CPARGRPKTRSLGLAPTEADAPS 940
Score = 29.6 bits (65), Expect = 7.9
Identities = 54/213 (25%), Positives = 73/213 (34%), Gaps = 50/213 (23%)
Query: 390 PLGATSGASLKTQPS---------SQPLQSGQVLPSATPTPSAP--------PTSQQELQ 432
PL AT QPS S PL QVLP+A P+P P E Q
Sbjct: 455 PLAATRSMFFNGQPSPGQRLCLPQSAPLPWPQVLPTARPSPHGMEMLSRLPFPAGGPEWQ 514
Query: 433 AKILSLFNSGTVTANSSSASPSV--AAGNTP---NQNFSTAANSQP----QQRSQASGNQ 483
+ T P+V + G +P N T +QP + Q S +
Sbjct: 515 GGSQGALGTAGKTPGPREKLPAVRSSQGGSPALFTYNGMTDPGAQPLFFGVAQPQVSPHG 574
Query: 484 PPSILGQG--GSAQNMGPRPGAPSQGLFGQPSSRLAPASNM-------TSQRP------- 527
PS+ G++ + P P +P+ G S L+P S+ SQ P
Sbjct: 575 TPSLPPPRVVGASPSESPLP-SPATNTAGSTCSSLSPMSSSPANPSSEESQLPGPLGPSA 633
Query: 528 -------VSSTGINFDNPSVQKALDTLIQSGPA 553
TG F +P +L T Q PA
Sbjct: 634 FFHPPTHPQETGSPFPSPEPPHSLPTHYQPEPA 666
>gi|32698692 zinc finger, DHHC domain containing 8 [Homo sapiens]
Length = 765
Score = 44.3 bits (103), Expect = 3e-04
Identities = 55/213 (25%), Positives = 81/213 (38%), Gaps = 25/213 (11%)
Query: 368 RERKERLMRSSTDSLPGPISRQPLGATSGASLKTQPSSQPLQSGQVLPSATPTPSAPPTS 427
RE +ERL+RS DSL G + + PSS LQ VL P+ S
Sbjct: 558 REERERLLRSQADSLFG-----------DSGVYDAPSSYSLQQASVLSEGPRGPALRYGS 606
Query: 428 QQELQA--KILSLFNSGTVTANSSSASPSVAAGNTPNQNFSTAANSQPQQRSQASGNQPP 485
+ +L A N T+ SS +S A T S+++ Q S A G +P
Sbjct: 607 RDDLVAGPGFGGARNPALQTSLSSLSSSVSRAPRT-----SSSSLQADQASSNAPGPRPS 661
Query: 486 SILGQGGSAQNMGPRPGAPSQGLFGQPSSRLAPASNMTSQRPVSSTGINFDNPSVQKALD 545
S + + Q + PG P + P + +++ P S + D+P ++
Sbjct: 662 SGSHRSPARQGLPSPPGTPHSPSYAGPKAVAFIHTDL--PEPPPSLTVQRDHPQLKTPPS 719
Query: 546 TLIQSGPALSHLVSQTTAQMGQPQAPMGSYQRH 578
L P L+ L T P P S RH
Sbjct: 720 KLNGQSPGLARLGPAT-----GPPGPSASPTRH 747
>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
sapiens]
Length = 1031
Score = 44.3 bits (103), Expect = 3e-04
Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 23/184 (12%)
Query: 22 RDSR--RDRSPIRG-----SPRREPRDGRNGR-DARDSRDIRDPRDLRDHRHSRDL-RDH 72
R+SR R RS RG S R P D R+ R D R SR RD RD R R RD
Sbjct: 3 RESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRS----RD-RDRRRERSRSRDK 57
Query: 73 RDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLR 132
R SRS RD + LR R R +R DR R SR R ++ +
Sbjct: 58 RRSRS----RDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKK 113
Query: 133 MDDYCRRKD-----DSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEE 187
++ R K+ +S ++ +D D ++ + + +L+ E R+R+E ++ EE
Sbjct: 114 TENRSRSKEKTDGGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREE 173
Query: 188 IQRR 191
+++
Sbjct: 174 QRKK 177
Score = 33.5 bits (75), Expect = 0.55
Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 31/178 (17%)
Query: 20 DSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHR-HSRD-LRDHRDSRS 77
D R R D R R R+ RD R SR RD + LR R RD R+ R SRS
Sbjct: 29 DKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRS-RDRKRLRRSRSRERDRSRERRRSRS 87
Query: 78 VRDVRDVRDLRDFRDLRD---------------SRDFRDQRDPMYDRYRDMRDSRDPMYR 122
RD R R R R S++ D + ++ +D D D +
Sbjct: 88 -RDRRRSRSRSRGRRSRSSSPGNKSKKTENRSRSKEKTDGGESSKEKKKDKDDKEDEKEK 146
Query: 123 REGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREEL 180
G++D+ ++ +RK+ +++R+ E + +A E + ++ EE+
Sbjct: 147 DAGNFDQNKLEEEMRKRKE--RVEKWRE----------EQRKKAMENIGELKKEIEEM 192
>gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo
sapiens]
Length = 600
Score = 43.5 bits (101), Expect = 5e-04
Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 10/180 (5%)
Query: 22 RDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 81
R + R+R R R+ ++ RD RD R R R R+ RD
Sbjct: 236 RKTEREREKQAERERASERETERDKERERERDRDRDRDRRQKERERQTDRKRQRRTERDR 295
Query: 82 RDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKD 141
R R+ R+ +R+ +R R+ R+ RE +R +RK
Sbjct: 296 ETERKRERQRERERERERNRKRERERERERERERQRETERDREKERER--------KRKR 347
Query: 142 DSYFDRYRDSFDGRGP--PGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAERPVD 199
+ DR R+ GR + R +ER ++ R REE R + Q+ + + D
Sbjct: 348 QTEMDRERNRQTGREGRRQAERERERERERDRQSAREREERERDRDRDRQKERERQTEKD 407
Score = 43.1 bits (100), Expect = 7e-04
Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 3/186 (1%)
Query: 12 RRDPYGFGDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRD 71
RR+ + + DR RG R R+ + + D R + R R+ +
Sbjct: 188 RRERERQREKENKTEDRHSERGRERERERETETETERKRQTDRERDRQRKTERE-REKQA 246
Query: 72 HRDSRSVRDVRDVRDLRDFRDLRDSRDFRD-QRDPMYDRYRDMRDSRDPMYRREGSYDRY 130
R+ S R+ ++ RD RD R +R+ DR R R RD R+ R
Sbjct: 247 ERERASERETERDKERERERDRDRDRDRRQKERERQTDRKRQRRTERDRETERKRERQRE 306
Query: 131 LRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQR 190
+ RK + +R R+ R + R ++R ++ E RE RQ E +R
Sbjct: 307 RERERERNRKRERERERERERERQRETERDREKERERKRKRQTEMDRER-NRQTGREGRR 365
Query: 191 RFDAER 196
+ + ER
Sbjct: 366 QAERER 371
Score = 40.4 bits (93), Expect = 0.004
Identities = 51/197 (25%), Positives = 77/197 (39%), Gaps = 30/197 (15%)
Query: 6 SRPSPTRR---DPYGFGDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRD 62
S+ SP RR + D D R+R R RRE R D + R+
Sbjct: 33 SQESPRRRGLGQAHKDADGDDRERNRQKER-ERRREKRQTERETDRK-----------RE 80
Query: 63 HRHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYR 122
R +D RD R RD R+ + R +RD ++ R+ + R+
Sbjct: 81 RRREKDRHRKRDRHRERQ----RDREKERERQTDR----ERDRQREKERNRQKERERETE 132
Query: 123 REGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYR 182
REG R + D R +R RD+ R + R ER +++ER RE+ R
Sbjct: 133 REGERGRDRQTDGQRER------ERQRDAEKERERQTDRERQRQTERNRQKEREREK-NR 185
Query: 183 QYFEEIQRRFDAERPVD 199
Q E +R+ + E +
Sbjct: 186 QERRERERQREKENKTE 202
Score = 37.4 bits (85), Expect = 0.038
Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 9/178 (5%)
Query: 23 DSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDL-RDHRHSRDLRDHRDSRSVRDV 81
D +R+R + R+ R RD R+ + R+ R R+ + R+ + R+
Sbjct: 76 DRKRERRREKDRHRKRDRHRERQRDREKERERQTDRERDRQREKERNRQKERERETEREG 135
Query: 82 RDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKD 141
RD R R+ QRD +R R R R +R + RR+
Sbjct: 136 ERGRD----RQTDGQRERERQRDAEKERERQTDRERQRQTERNRQKEREREKNRQERRER 191
Query: 142 DSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRRE---ELYRQYFEEIQRRFDAER 196
+ ++ + D G E + R +E ER+R+ E RQ E +R AER
Sbjct: 192 ERQREKENKTEDRHSERGRE-RERERETETETERKRQTDRERDRQRKTEREREKQAER 248
Score = 36.6 bits (83), Expect = 0.065
Identities = 44/200 (22%), Positives = 74/200 (37%), Gaps = 17/200 (8%)
Query: 2 NTAPSRPSPTRRD-PYGFGDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDL 60
N R T R+ G D +R+R R + + R R + R+ + R+
Sbjct: 122 NRQKERERETEREGERGRDRQTDGQRERERQRDAEKERERQTDRERQRQTERNRQKERER 181
Query: 61 RDHRHSRDLRDHRDSRSV----RDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDS 116
+R R R+ + + R R+ R+ + + Q D DR R
Sbjct: 182 EKNRQERRERERQREKENKTEDRHSERGRERERERETETETERKRQTDRERDRQRKTERE 241
Query: 117 RDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERR 176
R+ RE + +R D R+ D DR RD Q + + R+ +R
Sbjct: 242 REKQAERERASERETERDKERERERDR--DRDRD----------RRQKERERQTDRKRQR 289
Query: 177 REELYRQYFEEIQRRFDAER 196
R E R+ + +R+ + ER
Sbjct: 290 RTERDRETERKRERQRERER 309
Score = 33.9 bits (76), Expect = 0.42
Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 7/175 (4%)
Query: 23 DSRRDRSPIRGSPRREPRDGRNGRDAR-DSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 81
D R R + SPRR G+ +DA D R+ ++ R R D + R
Sbjct: 25 DFSRRRPGSQESPRRRGL-GQAHKDADGDDRERNRQKERERRREKRQTERETDRKRERRR 83
Query: 82 RDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKD 141
R + R RD +R+ DR RD + ++ R +R + R
Sbjct: 84 EKDRHRKRDRHRERQRDREKERERQTDRERDRQREKE----RNRQKERERETEREGERGR 139
Query: 142 DSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAER 196
D D R+ R + +ER ++ ER R++ R+ + Q R + ER
Sbjct: 140 DRQTDGQRERERQRDAEKERERQTDRERQRQTERNRQK-EREREKNRQERRERER 193
Score = 33.9 bits (76), Expect = 0.42
Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 12/160 (7%)
Query: 22 RDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 81
R+ R+R R R RD R+ + R R+ R+ + R+ R R + R+
Sbjct: 317 RERERERERERERQRETERDREKERERKRKRQTEMDRE-RNRQTGREGR--RQAERERER 373
Query: 82 RDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKD 141
RD + R+ R+ R+ RD +R R RD +RE R D R
Sbjct: 374 ERERDRQSARE-REERERDRDRDRQKERERQTEKDRDG--QRETEKQREREKDRESERGR 430
Query: 142 DSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELY 181
+ R R+ GR + R +R +R+R LY
Sbjct: 431 ER--GREREKQKGR----ERDRERQTDRQAGRQRKRSTLY 464
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 43.5 bits (101), Expect = 5e-04
Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 25/174 (14%)
Query: 22 RDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 81
R R R + R R+ + R R R+ LR R + LR R R+
Sbjct: 1741 RRQERYRKILEEEQLRPEREEQQLRRQERDRKFREEEQLRQEREEQQLRSQESDRKFREE 1800
Query: 82 RDVRDLRDFRDLR-DSRD----FRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDY 136
+R R+ + LR RD + +++ + ++ + +R RD YR E + +
Sbjct: 1801 EQLRQEREEQQLRPQQRDGKYRWEEEQLQLEEQEQRLRQERDRQYRAEEQF----ATQEK 1856
Query: 137 CRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQR 190
RR++ + + K R +RE + REE R+ +E QR
Sbjct: 1857 SRREEQELWQ----------------EEEQKRRQERERKLREEHIRRQQKEEQR 1894
Score = 42.7 bits (99), Expect = 0.001
Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 20 DSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLR-DHRDSRSV 78
+ ++ RR++ R + E R+ + R+ + R+ + R+ + R + LR + + R
Sbjct: 316 EQQEERREQQE-RREQQEERREQQLRREQEERREQQLRREQEEERREQQLRREQEEERRE 374
Query: 79 RDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCR 138
+ +R + LR + LR + R R+ R + +R R+ RRE + LR + R
Sbjct: 375 QQLRREQQLRREQQLRREQQLR--REQQLRREQQLR--REQQLRRE----QQLRREQQLR 426
Query: 139 RKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKRE--------ERRREELYRQYFEEIQR 190
R+ + + + R Q ++ LKRE ERR+++L R EE +
Sbjct: 427 REQEEERHEQKHEQERREQRLKREQEERRDWLKREEETERHEQERRKQQLKRDQEEERRE 486
Query: 191 RF 192
R+
Sbjct: 487 RW 488
Score = 42.7 bits (99), Expect = 0.001
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 11/176 (6%)
Query: 25 RRDRSPIRGSPRREPRDGRNGRDARDSRDIRD--PRDLRDHRHSRDLRDHRDSRSVRDVR 82
RR++ R + E ++ R R R+ + RD R+ RH ++ R + R + R
Sbjct: 426 RREQEEERHEQKHE-QERREQRLKREQEERRDWLKREEETERHEQERRKQQLKRDQEEER 484
Query: 83 DVRDLR-DFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKD 141
R L+ + + R+ ++ R+Q+ + + R+ R E + LR + RR+
Sbjct: 485 RERWLKLEEEERREQQERREQQ--LRREQEERREQRLKRQEEEERLQQRLRSEQQLRREQ 542
Query: 142 DSYFDRYRDSFDGRGPPGPESQSRAKERLKRE-ERRREELYRQYFEEIQRRFDAER 196
+ R+ R Q R ++RLKRE E RR++L ++ E Q+R E+
Sbjct: 543 EER----REQLLKREEEKRLEQERREQRLKREQEERRDQLLKREEERRQQRLKREQ 594
Score = 42.0 bits (97), Expect = 0.002
Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 6/174 (3%)
Query: 23 DSRRDRSPIRGSP-RREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 81
+ RR++ R RRE + R R R + R + LR + R ++ R + ++
Sbjct: 494 EERREQQERREQQLRREQEERREQRLKRQEEEERLQQRLRSEQQLRREQEERREQLLKRE 553
Query: 82 RDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKD 141
+ R ++ R+ R R+ ++RD + R + R R + E R R + ++
Sbjct: 554 EEKRLEQERREQRLKREQEERRDQLLKREEERRQQRLKREQEERLEQRLKREEVERLEQE 613
Query: 142 DSYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAE 195
+ R + R P E + + + ++EERR+++L R+ E ++R E
Sbjct: 614 ERREQRLK-----REEPEEERRQQLLKSEEQEERRQQQLRREQQERREQRLKRE 662
Score = 41.2 bits (95), Expect = 0.003
Identities = 39/188 (20%), Positives = 84/188 (44%), Gaps = 20/188 (10%)
Query: 19 GDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSV 78
G+ + RR + + E + R+ R+ R ++ +D + + +
Sbjct: 975 GEEPEKRRRQEREKKYREEEELQQEEEQLLREEREKRRRQEWERQYRKKDELQQEEEQLL 1034
Query: 79 RDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCR 138
R+ R+ R L++ R +R++ + + + + + R+ R+E +R R ++ +
Sbjct: 1035 REEREKRRLQE-----RERQYREEEELQQEEEQLLGEERETRRRQE--LERQYRKEEELQ 1087
Query: 139 RKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREE----------RRREELYRQYFEEI 188
++++ R+ + R E Q R +E L++EE RRR+EL RQY EE
Sbjct: 1088 QEEEQLL---REEPEKRRRQERERQCREEEELQQEEEQLLREEREKRRRQELERQYREEE 1144
Query: 189 QRRFDAER 196
+ + + E+
Sbjct: 1145 EVQQEEEQ 1152
Score = 39.3 bits (90), Expect = 0.010
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 19/179 (10%)
Query: 20 DSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVR 79
+ + R + ++ E R+ + + R+ ++ R+ + R + R+ R R
Sbjct: 465 ERHEQERRKQQLKRDQEEERRERWLKLEEEERREQQERREQQLRREQEERREQRLKRQEE 524
Query: 80 DVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMR---DSRDPMYRREGSYDRYLRMDDY 136
+ R + LR + LR R+ ++R+ + R + R + R+ +RE R D
Sbjct: 525 EERLQQRLRSEQQLR--REQEERREQLLKREEEKRLEQERREQRLKREQEE----RRDQL 578
Query: 137 CRRKDDSYFDRYRDSFDGRGPPGPESQSRAK----ERLKREERRREELYRQYFEEIQRR 191
+R+++ R + + R + R K ERL++EERR + L R+ EE +R+
Sbjct: 579 LKREEERRQQRLKREQEER------LEQRLKREEVERLEQEERREQRLKREEPEEERRQ 631
Score = 38.9 bits (89), Expect = 0.013
Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 28/183 (15%)
Query: 37 REPRDGRNGRD------ARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDVRDVRDLRDF 90
RE R+ R ++ +D + + LR+ R R L++ R R+ +L+
Sbjct: 1005 REEREKRRRQEWERQYRKKDELQQEEEQLLREEREKRRLQERE-----RQYREEEELQQE 1059
Query: 91 RD--LRDSRDFRDQRD--PMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDSYFD 146
+ L + R+ R +++ Y + +++ + + R E R + CR +++ +
Sbjct: 1060 EEQLLGEERETRRRQELERQYRKEEELQQEEEQLLREEPEKRRRQERERQCREEEELQQE 1119
Query: 147 R---YRDSFDGRGPPGPESQSRAKERLKREE----------RRREELYRQYFEEIQRRFD 193
R+ + R E Q R +E +++EE RRR+EL RQY EE + + +
Sbjct: 1120 EEQLLREEREKRRRQELERQYREEEEVQQEEEQLLREEPEKRRRQELERQYREEEELQQE 1179
Query: 194 AER 196
E+
Sbjct: 1180 EEQ 1182
Score = 38.1 bits (87), Expect = 0.022
Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 46 RDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRD--FRDQR 103
R ++ + + D + LR + LR RD + D + +++ + + R RD F ++
Sbjct: 1590 RQEQERKFMEDEQQLRRQEGQQQLRQERDRKFREDEQLLQEREEQQLHRQERDRKFLEEE 1649
Query: 104 DPM--YDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPE 161
+ +R + +R RD +R E + R++ D F
Sbjct: 1650 PQLRRQEREQQLRHDRDRKFREEEQLLQEGEEQQLRRQERDRKFREEEQQL--------R 1701
Query: 162 SQSRAKERLKREER-RREELYRQYFEEIQRRFDAER 196
Q R ++ L+ E++ RR+EL R++ EE Q R + E+
Sbjct: 1702 RQERERKFLQEEQQLRRQELERKFREEEQLRQETEQ 1737
Score = 37.0 bits (84), Expect = 0.050
Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 13/166 (7%)
Query: 32 RGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDVRDVRDLRDFR 91
R +++ R R+ + D + +++ + + HR RD + + +R + LR R
Sbjct: 1606 RQEGQQQLRQERDRKFREDEQLLQEREEQQLHRQERDRKFLEEEPQLRRQEREQQLRHDR 1665
Query: 92 DLRDSRDFRDQRDPMYDRYRDM--RDSRDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYR 149
D R FR++ + + R RD +R E ++ LR + R+ R
Sbjct: 1666 D----RKFREEEQLLQEGEEQQLRRQERDRKFREE---EQQLRRQERERKFLQEEQQLRR 1718
Query: 150 DSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAE 195
+ + + + ++ ++E+ RR+E YR+ EE Q R + E
Sbjct: 1719 QELERKF----REEEQLRQETEQEQLRRQERYRKILEEEQLRPERE 1760
Score = 35.8 bits (81), Expect = 0.11
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 27/182 (14%)
Query: 25 RRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDH--RHSRDLRDHRDSRSVRDVR 82
RR++ R + + R ++ R+ R R+ + RD + + R R R +
Sbjct: 539 RREQEERREQLLKREEEKRLEQERREQRLKREQEERRDQLLKREEERRQQRLKREQEERL 598
Query: 83 DVRDLRDFRDLRDSRDFRDQR----DPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCR 138
+ R R+ + + + R+QR +P +R + + S + RR+ + LR + R
Sbjct: 599 EQRLKREEVERLEQEERREQRLKREEPEEERRQQLLKSEEQEERRQ----QQLRREQQER 654
Query: 139 RKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKR---EERRREELYRQYFEEIQRRFDAE 195
R+ + E + R ++RLKR EERR +EL + E+ + R +
Sbjct: 655 REQRLKRE--------------EEEERLEQRLKREHEEERREQELAEEEQEQARERIKSR 700
Query: 196 RP 197
P
Sbjct: 701 IP 702
Score = 35.0 bits (79), Expect = 0.19
Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 22 RDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 81
R S++D + G ++ RD R RD P + + R + RD +S +
Sbjct: 1261 RQSQQDLQHLLGE--QQERDREQERRRWQQRDRHFPEEEQLEREEQKEAKRRDRKSQEEK 1318
Query: 82 RDVRDLRDFRDLRDSRD--FRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRR 139
+ +R+ R+ + R D FR++ + +R P+ R+E DR R ++ +
Sbjct: 1319 QLLREEREEKRRRQETDRKFREEEQLLQER------EEQPLRRQE--RDRKFREEELRHQ 1370
Query: 140 KDDSYF----DRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAE 195
+ F R R R E Q R +E RE++ R++ R++ EE Q+ E
Sbjct: 1371 EQGRKFLEEEQRLRRQERERKFLKEEQQLRCQE---REQQLRQDRDRKFREEEQQLSRQE 1427
Query: 196 R 196
R
Sbjct: 1428 R 1428
Score = 34.7 bits (78), Expect = 0.25
Identities = 36/173 (20%), Positives = 73/173 (42%), Gaps = 12/173 (6%)
Query: 25 RRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSR-SVRDVRD 83
RR++ R R + R + R + +R + LR + R R+ + R + ++
Sbjct: 384 RREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQQLR--REQEEERHEQKHEQE 441
Query: 84 VRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDS 143
R+ R R+ + RD+ + + ++ R + + E +R+L++++ RR+
Sbjct: 442 RREQRLKREQEERRDWLKREEETERHEQERRKQQLKRDQEEERRERWLKLEEEERREQQE 501
Query: 144 YFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAER 196
++ E + R ++RLKR+E R E+ RR ER
Sbjct: 502 RREQQLRR---------EQEERREQRLKRQEEEERLQQRLRSEQQLRREQEER 545
Score = 34.7 bits (78), Expect = 0.25
Identities = 36/174 (20%), Positives = 74/174 (42%), Gaps = 5/174 (2%)
Query: 23 DSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDVR 82
+ + +R R S R R+ R + + R R+ R L + R R R ++++
Sbjct: 774 EEKSERGRQRLSARPPLREQRERQLRAEERQQREQRFLPEEEEKEQRRRQRRERE-KELQ 832
Query: 83 DVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDD 142
+ + + ++ +++ D + + D R RR+ + R+ ++ RR+
Sbjct: 833 FLEEEEQLQRRERAQQLQEEEDGLQE---DQERRRSQEQRRDQKW-RWQLEEERKRRRHT 888
Query: 143 SYFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAER 196
Y + + + +R +RE+RRR+E RQY EE Q + + E+
Sbjct: 889 LYAKPALQEQLRKEQQLLQEEEEELQREEREKRRRQEQERQYREEEQLQQEEEQ 942
Score = 33.1 bits (74), Expect = 0.72
Identities = 40/189 (21%), Positives = 81/189 (42%), Gaps = 23/189 (12%)
Query: 20 DSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDL-RDHRHSRDLRDHRDSRSV 78
+ R+ RR + R E + + R+ R ++L R +R +L+ +
Sbjct: 1036 EEREKRRLQERERQYREEEELQQEEEQLLGEERETRRRQELERQYRKEEELQQEEEQLLR 1095
Query: 79 RDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCR 138
+ R R R+ + + + + + +R+ R+ R+E +R R ++ +
Sbjct: 1096 EEPEKRRRQERERQCREEEELQQEEEQL------LREEREKRRRQE--LERQYREEEEVQ 1147
Query: 139 RKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREE---------RRREELYRQY--FEE 187
++++ R+ + R E Q R +E L++EE +RR+E RQY EE
Sbjct: 1148 QEEEQLL---REEPEKRRRQELERQYREEEELQQEEEQLLREEQEKRRQERERQYREEEE 1204
Query: 188 IQRRFDAER 196
+QR+ +R
Sbjct: 1205 LQRQKRKQR 1213
Score = 31.6 bits (70), Expect = 2.1
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 111 RDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERL 170
+D R D RR DR L + RR+ ++ R+ +G E QS +ERL
Sbjct: 111 QDRRQEEDQ--RRFEPRDRQLEEEPGQRRRQKRQ-EQERELAEG------EEQSEKQERL 161
Query: 171 KREERRR--EELYRQ---YFEEIQRRFDAERPVDCSVIVVNKQTKDYAESVGRKVRDL 223
++ +R+R EEL+RQ + E +RR + E+ C +T+++ + + R+L
Sbjct: 162 EQRDRQRRDEELWRQRQEWQEREERRAEEEQLQSCK----GHETEEFPDEEQLRRREL 215
Score = 30.0 bits (66), Expect = 6.1
Identities = 34/173 (19%), Positives = 71/173 (41%), Gaps = 6/173 (3%)
Query: 25 RRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDVRDV 84
RR+ +R R E + R R R ++ + + LR + + +
Sbjct: 212 RRELLELRRKGREEKQQQRR---ERQDRVFQEEEEKEWRKRETVLRKEEEKLQEEEPQRQ 268
Query: 85 RDLRDFRD-LRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDS 143
R+L++ + LR +R+ + + R R+ RR+ +R + ++ RR+
Sbjct: 269 RELQEEEEQLRKLERQELRRERQEEEQQQQRLRREQQLRRKQEEERREQQEE--RREQQE 326
Query: 144 YFDRYRDSFDGRGPPGPESQSRAKERLKREERRREELYRQYFEEIQRRFDAER 196
++ + + + E + + R ++EE RRE+ R+ EE +R R
Sbjct: 327 RREQQEERREQQLRREQEERREQQLRREQEEERREQQLRREQEEERREQQLRR 379
Score = 30.0 bits (66), Expect = 6.1
Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 25/195 (12%)
Query: 22 RDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDV 81
++ RRD+ R RR+ R R + + R R+ + + R+ R R+
Sbjct: 571 QEERRDQLLKREEERRQQRLKREQEERLEQRLKREEVERLEQEERREQRLKREEPEEERR 630
Query: 82 RDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKD 141
+ + + + R + R+Q++ R + + R + ++ R + +
Sbjct: 631 QQLLKSEEQEERRQQQLRREQQERREQRLKREEEEERLEQRLKREHEEERREQELAEEEQ 690
Query: 142 DSYFDRYR--------------DSFDGRGPPGPESQSRAKERLKREERRR---------- 177
+ +R + D+ + P Q + R ++EE+RR
Sbjct: 691 EQARERIKSRIPKWQWQLESEADARQSKVYSRPRKQEGQRRRQEQEEKRRRRESELQWQE 750
Query: 178 -EELYRQYFEEIQRR 191
E +RQ EE QRR
Sbjct: 751 EERAHRQQQEEEQRR 765
>gi|18379328 WW domain-containing adapter with a coiled-coil region
isoform 1 [Homo sapiens]
Length = 647
Score = 43.5 bits (101), Expect = 5e-04
Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 29/210 (13%)
Query: 388 RQPLGATSGASLKTQPSSQPLQSGQVLPSATPT--PSAPPTSQQELQAKILSLFNSGTVT 445
R P T +S Q +P+ V P+ATP+ PS+P T Q + Q K N +
Sbjct: 233 RLPRAETHSSSTPVQHPIKPV----VHPTATPSTVPSSPFTLQSDHQPKKSFDANGASTL 288
Query: 446 ANSSSASPSVAAGNTPNQNFST-----AANSQPQQRSQASGNQPPSILGQGGSAQNMGPR 500
+ + + SV A T + ++ + + S ASG P S SA + P
Sbjct: 289 SKLPTPTSSVPAQKTERKESTSGDKPVSHSCTTPSTSSASGLNPTSAPPTSASAVPVSPV 348
Query: 501 PGAPSQGLFGQPS--SRLAPASNMTSQRPVSSTGINFDN---------PSVQKALDTLIQ 549
P +P L P+ +L PA T Q S+ I+ N S+Q + +
Sbjct: 349 PQSPIPPLLQDPNLLRQLLPALQATLQLNNSNVDISKINEVLTAAVTQASLQSIIHKFLT 408
Query: 550 SGPA---LSHLVSQTT--AQMGQP--QAPM 572
+GP+ ++ L+SQ + QP Q+PM
Sbjct: 409 AGPSAFNITSLISQAAQLSTQAQPSNQSPM 438
Score = 30.4 bits (67), Expect = 4.7
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 373 RLMRSSTDSLPGPISRQPLGATSGASLKTQPSSQPLQSGQVLPSATPTPSAPPTSQQELQ 432
R+ T+++P +PL +T S + + S+ ++ G V SAT P Q
Sbjct: 454 RISTPQTNTVP----IKPLISTPPVSSQPKVSTPVVKQGPVSQSATQQPVTADKQQGHEP 509
Query: 433 AKILSLFNSGTVTANSSSASPSVAAGNTPNQNFSTAANSQPQQRSQAS 480
SL S SS SPS +T N + ++ A PQ S S
Sbjct: 510 VSPRSLQRS------SSQRSPSPGPNHTSNSSNASNATVVPQNSSARS 551
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 43.5 bits (101), Expect = 5e-04
Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 26/202 (12%)
Query: 356 TAEETDKIINYLRERKERLMRSSTDSLPGPISRQPLGATSGASL-----KTQPSSQPLQS 410
T + + L+ KER SS+ S S ++S +S ++ SS P+Q
Sbjct: 2513 TGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQP 2572
Query: 411 GQVL---PSATPTP------SAPPTSQQELQAKILSLFNSGTVTANSSSASPSVAAGNTP 461
L PS TP P PP + + S +S + +++SSS+S S ++ ++
Sbjct: 2573 EVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSS 2632
Query: 462 NQNFSTAANSQPQQRSQASGNQPPSILGQGGSAQNMGPRPGAPSQGLFGQPSSR--LAPA 519
+ + S++++S S + P L P+P +P + G+ SR P
Sbjct: 2633 SSSSSSSSSSSSSSSSPSPAKPGPQAL----------PKPASPKKPPPGERRSRSPRKPI 2682
Query: 520 SNMTSQRPVSSTGINFDNPSVQ 541
++ R +S + + PS Q
Sbjct: 2683 DSLRDSRSLSYSPVERRRPSPQ 2704
Score = 34.7 bits (78), Expect = 0.25
Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 33/211 (15%)
Query: 374 LMRSSTDSLPGPISRQ---PLGATSGASLKTQPSSQPLQSGQVLPSATPTPSAPPTSQQE 430
L RS + S P P + P + SG SSQP + P + + S+PP Q+
Sbjct: 775 LRRSLSGSSPCPKQKSQTPPRRSRSG-------SSQPKAKSRTPPRRSRSSSSPPPKQKS 827
Query: 431 LQAKILSLFNSGTVTANSSSASPSVAAGNTPNQNFSTA--ANSQ---PQQRSQASGNQPP 485
+ +SSS P V +G P Q T+ AN Q PQ+RS + P
Sbjct: 828 K--------TPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDP 879
Query: 486 SILGQGGSAQNMGPRPGAPSQGLFGQPSSRLAPASNMTSQRPVSSTGINFDNPSVQKALD 545
+ + S + G+ + R +P+ + + Q V + +P +
Sbjct: 880 ELKSRTPSRHSCS---GSSPPRVKSSTPPRQSPSRSSSPQPKVKA----IISPRQRSHSG 932
Query: 546 TLIQSGPALSHLVSQTTAQMGQPQAPMGSYQ 576
+ S P+ S + S+TT + + +P + +
Sbjct: 933 S---SSPSPSRVTSRTTPRRSRSVSPCSNVE 960
Score = 31.6 bits (70), Expect = 2.1
Identities = 128/598 (21%), Positives = 189/598 (31%), Gaps = 68/598 (11%)
Query: 3 TAPSRPSPTRRDPYGFGDSRDSR-RDRSPIRG-SPRREPRDGRNGRDARDSRDIRDPRDL 60
++P P +R G S + + + R+P R S R P R R +R SR +
Sbjct: 1657 SSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPET 1716
Query: 61 RD-----HRHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRD 115
R HR S + + R R R R SR R R
Sbjct: 1717 RSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSR 1776
Query: 116 SRDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKR-EE 174
SR R DR RR+ S R R + RG G S+S A++ R
Sbjct: 1777 SRREKTRTTRRRDRSGSSQSTSRRRQRSR-SRSRVTRRRRGGSGYHSRSPARQESSRTSS 1835
Query: 175 RRREELYRQYFEEIQRRFDAERPVDCSVIVVNKQTKDYAE-SVGRKVRDLGMVVDLIFLN 233
RRR R +R P K+++ A + R+ R ++
Sbjct: 1836 RRRRGRSRTPPTSRKRSRSRTSPAPW------KRSRSRASPATHRRSRSRTPLISRRRSR 1889
Query: 234 TEVSLSQALEDVSRGGSPFAIVITQQHQIHRSCTVNIMFG---TPQEHRNMPQADAMVLV 290
+ S VSR S +T++ R+ V+ TP R ++
Sbjct: 1890 SRTS------PVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTR 1943
Query: 291 ARNYERYKNECREKEREE---IARQAAKMADEAILQERERGGPEEGVRGGHPPAIQSLIN 347
R+ R R + R + R+ ++ I + R R R +S
Sbjct: 1944 RRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRR------RSRSR 1997
Query: 348 LLADNRYLTAEETDKIINYLRERKERLMRSSTDSLPGPISRQPLGATSGASLKTQPSSQP 407
R + T + R S P I R+ T K S P
Sbjct: 1998 TSPVTRRRSRSRTSPVTR----------RRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSP 2047
Query: 408 LQSGQVLPSATPTPSAPPTSQQELQAKILSLFNSGTVTANSSSASPSVAAGNTPNQNFST 467
L + S TP + S I SG+ + S SA+P ++ ++
Sbjct: 2048 LAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPV 2107
Query: 468 AANSQ-------------PQQRSQASG--------NQPPSILGQGGSAQNMGPRPGAPSQ 506
A NS P R ++ G P S+L Q G + GP P P
Sbjct: 2108 ALNSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSSRTPMSVLQQAGGSMMDGPGPRIPDH 2167
Query: 507 GLFGQPSSRLAPASNMTSQRPVSSTGINFDNPSVQKA-LDTLIQSGPALSHLVSQTTA 563
P + S + S G PS+ A L + PA L+S TA
Sbjct: 2168 QRTSVPENH--AQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTA 2223
Score = 31.2 bits (69), Expect = 2.7
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 385 PISRQPLGATSGASLKTQPSSQPLQSGQVLPSATPTPSAPPTSQQELQAKILSLFNSGTV 444
P+S++P+ S AS T+ S P +S + LP ++ + S+PP+ Q ++
Sbjct: 385 PLSQEPVNPPSEAS-PTRDRSPP-KSPEKLPQSSSSESSPPSPQPTKVSR---------- 432
Query: 445 TANSSSASPSVAAGNTPNQNFSTAANSQPQQRSQASGNQPPS 486
A+SS SP A ++ S++ S+ + +A ++ S
Sbjct: 433 HASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHS 474
Score = 30.4 bits (67), Expect = 4.7
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 13/158 (8%)
Query: 373 RLMRSSTDSLPGPISRQPLGATSGASLKTQP---SSQPLQSGQVLPSATPTPSAPPTSQQ 429
R RSS+ P S+ P S +S P S P + G + S P +
Sbjct: 813 RRSRSSSSPPPKQKSKTP-SRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRS 871
Query: 430 ELQAKILSLFNSGTVTANSSSAS--PSVAAGNTPNQNFSTAANSQPQQRSQASGNQPPSI 487
++ S T + +S S S P V + P Q+ S +++ QP+ ++ S P
Sbjct: 872 CFESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIIS----PRQ 927
Query: 488 LGQGGSAQNMGPRPGAPSQGLFGQPSSRLAPASNMTSQ 525
GS+ P P + + S ++P SN+ S+
Sbjct: 928 RSHSGSS---SPSPSRVTSRTTPRRSRSVSPCSNVESR 962
Score = 30.0 bits (66), Expect = 6.1
Identities = 41/160 (25%), Positives = 60/160 (37%), Gaps = 11/160 (6%)
Query: 380 DSLPGPISRQPLGATSGASLKTQPS-SQPLQSGQVLPSATPTPSAPPTSQQELQAKILSL 438
+ L GP Q L +K Q + S S ++ P A A +S Q + + +L
Sbjct: 1353 EDLNGPFLNQ-LETDPSLDMKEQSTRSSGHSSSELSPDAVE--KAGMSSNQSISSPVLDA 1409
Query: 439 FNSGTVTANSSSAS-PSVAAGNTPNQNFSTAANSQPQQRSQASGNQPPSILGQGGSAQNM 497
SSSAS P + G + + + S P R G+ PS GS+ M
Sbjct: 1410 VPRTPSRERSSSASSPEMKDGLPRTPSRRSRSGSSPGLR---DGSGTPSRHSLSGSSPGM 1466
Query: 498 GPRPGAPSQG---LFGQPSSRLAPASNMTSQRPVSSTGIN 534
P PS+G P + P + R SS +N
Sbjct: 1467 KDIPRTPSRGRSECDSSPEPKALPQTPRPRSRSPSSPELN 1506
Score = 29.6 bits (65), Expect = 7.9
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 4 APSRPSPTRRDPYGFGDSRDSRRDR-----SPI---RGSPRREPRDGRNGRDARDSR--- 52
+P +P P R DS RD SP+ R SP+ PRD ++ R SR
Sbjct: 2664 SPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQ 2723
Query: 53 --DIRDP--RDLRDHRHSRDLRDHRDSRS 77
D R P + R+ R +R HR SRS
Sbjct: 2724 RGDSRSPSHKRRRETPSPRPMR-HRSSRS 2751
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 43.5 bits (101), Expect = 5e-04
Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 6 SRPSPTRRD-PYGFG-DSRDSRRDRSPI--RGSPRREPRDGRNGRDA-----RDSRDIRD 56
S+P P ++ YG G D ++ ++ P R + R +P R+ + RD D
Sbjct: 1631 SKPPPVQQTVDYGHGRDISTNKVEQIPYGERITLRPDPLPERSTFETEHAGQRDRYDRER 1690
Query: 57 PRDLRDHRHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRD-FRDQRDPMYDRYRDMRD 115
R+ R S + DHRD + R+ RD RD + RD F +R P DR + RD
Sbjct: 1691 DREPYFDRQSNVIADHRDFKRDRETHRDRD-RDRGVIDYDRDRFDRERRPRDDRAQSYRD 1749
Query: 116 SRDPMYRREGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERL 170
+D R G +DR Y R+ D R ++G G E ++ +ER+
Sbjct: 1750 KKDHSSSRRGGFDR----PSYDRKSD-------RPVYEGPSMFGGERRTYPEERM 1793
Score = 35.4 bits (80), Expect = 0.14
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 7/125 (5%)
Query: 403 PSSQPLQSGQ-VLPSATPTPSAPPTSQQELQAKILSLFNSGTVTANSSSASPSVAAGNTP 461
PS P S Q LP A P+PS P SQ L S + +++SS + S + P
Sbjct: 172 PSYYPPTSSQPYLPPAQPSPSQSPPSQSYLAPT-----PSYSSSSSSSQSYLSHSQSYLP 226
Query: 462 NQNFSTAANSQPQQRSQASGNQPPSI-LGQGGSAQNMGPRPGAPSQGLFGQPSSRLAPAS 520
+ S + SQ +SQ PPS G + Q GA ++ Q ++ S
Sbjct: 227 SSQASPSRPSQGHSKSQLLAPPPPSAPPGNKTTVQQEPLESGAKNKSTEQQQAAPEPDPS 286
Query: 521 NMTSQ 525
MT Q
Sbjct: 287 TMTPQ 291
Score = 33.5 bits (75), Expect = 0.55
Identities = 46/151 (30%), Positives = 58/151 (38%), Gaps = 26/151 (17%)
Query: 32 RGSPRREPRDGRNGRDARDSRDIRDPRDLRDHRHSRDLRDHRDSRSVRDVRDVRDLRDFR 91
+G PR + RD R + +S R P R + D RD V R R
Sbjct: 998 KGLPRPDNRDNRLEGNRGNSSSYRGPGQSR-------MEDTRDKGLVNRGRGQAISRG-P 1049
Query: 92 DLRDSRDFRDQRDPMYDRYRDMRDSRDPMYRREGSYDRYLRMDDYCRRKDDSYF----DR 147
L DFRD+ M R DSR+ M R EGS DR L R K DR
Sbjct: 1050 GLVKQEDFRDK---MMGR---REDSREKMNRGEGSRDRGLVRPGSSREKVPGGLQGSQDR 1103
Query: 148 YRDSFDGRGPP--------GPESQSRAKERL 170
RGPP GP ++ ++ER+
Sbjct: 1104 GAAGSRERGPPRRAGSQERGPLRRAGSRERI 1134
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 42.4 bits (98), Expect = 0.001
Identities = 54/207 (26%), Positives = 69/207 (33%), Gaps = 27/207 (13%)
Query: 339 PPAIQSLINLLADNRYLTAEETDKIINYLRERKERLMRSSTDSLPGPISRQPLGATSGAS 398
PPA SL + A+ + A + L+ R L T S P P P G+ +
Sbjct: 329 PPAQGSLGTMTANQGWKKAPLPGPMQQQLQARPS-LATVQTPSHPPP--PYPFGSQQASQ 385
Query: 399 LKTQ------------PSSQPLQSGQVLPSATPTPSAPPTSQQELQAKILSLFNSG---- 442
T P + LQ G PS PTP P + A S F G
Sbjct: 386 AHTNFPQMSNPGQFTAPQMKSLQGG---PSRVPTPLQQPHLTNKSPASSPSSFQQGSPAS 442
Query: 443 --TVTANSSSASPSVAAGNTPNQNFSTAANSQPQQRSQASGNQPPSILGQGGSAQNMGPR 500
TV P N Q F +S + GN PP+ + N GP+
Sbjct: 443 SPTVNQTQQQMGPRPPQNNPLPQGFQQPVSSPGRNPMVQQGNVPPNFMVMQQQPPNQGPQ 502
Query: 501 PGAPSQGLFGQPSSRLAPASNMTSQRP 527
P GL G P RL P + P
Sbjct: 503 SLHP--GLGGMP-KRLPPGFSAGQANP 526
Score = 31.6 bits (70), Expect = 2.1
Identities = 54/191 (28%), Positives = 69/191 (36%), Gaps = 53/191 (27%)
Query: 401 TQPSSQPLQSG-QVLPSATPTPSAPPTSQQELQAKILSLFNSGTVTANSS---------- 449
T P+ P+ G LPS PP +Q L GT+TAN
Sbjct: 307 TAPTQVPVPPGWNQLPSGA---LQPPPAQGSL----------GTMTANQGWKKAPLPGPM 353
Query: 450 ----SASPSVAAGNTPNQNFSTAANSQPQQRSQASGNQPPSILGQGGSAQNMGPRPGAPS 505
A PS+A TP+ QQ SQA N P N G
Sbjct: 354 QQQLQARPSLATVQTPSHPPPPYPFGS-QQASQAHTNFP--------QMSNPGQFTAPQM 404
Query: 506 QGLFGQPSSRLAPAS--NMTSQRPVSSTGINFDNPSVQKALDTLIQSGPALSHLVSQTTA 563
+ L G PS P ++T++ P SS PS + Q PA S V+QT
Sbjct: 405 KSLQGGPSRVPTPLQQPHLTNKSPASS-------PS------SFQQGSPASSPTVNQTQQ 451
Query: 564 QMGQPQAPMGS 574
QMG P+ P +
Sbjct: 452 QMG-PRPPQNN 461
>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B [Homo sapiens]
Length = 546
Score = 41.6 bits (96), Expect = 0.002
Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 12/174 (6%)
Query: 6 SRPSPTRRDPYG---FGDSRDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRD 62
SR R+ +G F + ++R + + ++ R R + R R
Sbjct: 276 SRSRSHHREGHGSSSFDRELEREKERQRLEREAKEREKERRRSRSIDRGLERRRSRSRER 335
Query: 63 HRHSRDLRDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRDPMYR 122
HR RD + R RD R+ + R R RD+ +R ++ R+ R R
Sbjct: 336 HRSRSRSRDRKGDRRDRDRE--REKENERGRRRDRDYDKERGNEREKERERSRERSKEQR 393
Query: 123 REGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREERR 176
G + +D KDD R+RD S+SR++ER R R
Sbjct: 394 SRGEVEEKKHKED----KDDR---RHRDDKRDSKKEKKHSRSRSRERKHRSRSR 440
Score = 38.9 bits (89), Expect = 0.013
Identities = 41/177 (23%), Positives = 66/177 (37%), Gaps = 24/177 (13%)
Query: 22 RDSRRDRSPIRGSPRREPRDGRNGRDARDSRDIRDPRDLRD----------HRHSRDL-- 69
++ RR RS RG RR R R SRD + R RD R RD
Sbjct: 313 KERRRSRSIDRGLERRRSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDK 372
Query: 70 -----------RDHRDSRSVRDVRDVRDLRDFRDLRDSRDFRDQRDPMYDRYRDMRDSRD 118
R S+ R +V + + D D R D+RD ++ SR+
Sbjct: 373 ERGNEREKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRE 432
Query: 119 PMYR-REGSYDRYLRMDDYCRRKDDSYFDRYRDSFDGRGPPGPESQSRAKERLKREE 174
+R R S + R + K + + ++ + R G + ++ + E+ K+ E
Sbjct: 433 RKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKRE 489
>gi|7662228 synaptosomal-associated protein, 91kDa homolog [Homo
sapiens]
Length = 907
Score = 41.2 bits (95), Expect = 0.003
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 23/158 (14%)
Query: 417 ATPTPSAPPTSQQELQAKILSLFNSGTVTANSSSASPSVAAGNTPNQNFSTA---ANSQP 473
++P A P + L A +LS+ ++ + +++ASP+ + F A + S+P
Sbjct: 595 SSPPQGASPVPESSLTADLLSV-DAFAAPSPATTASPAKVDSSGVIDLFGDAFGSSASEP 653
Query: 474 QQRSQASGNQPPS---ILGQGGSAQNMGPRPGAPSQGLFGQPSSRLAPASNMTSQRPVSS 530
Q SQA+ + S + G GGS P P P+Q QP+ A + P +S
Sbjct: 654 QPASQAASSSSASADLLAGFGGSFMAPSPSPVTPAQNNLLQPNFEAAFGTT-----PSTS 708
Query: 531 TGINFDNPSVQKALDTLIQSGPALSHLVSQTTAQMGQP 568
+ +FD PSV L L+ T A GQP
Sbjct: 709 SSSSFD-PSVFDGLGDLLM----------PTMAPAGQP 735
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 41.2 bits (95), Expect = 0.003
Identities = 49/176 (27%), Positives = 73/176 (41%), Gaps = 36/176 (20%)
Query: 377 SSTDSL--PGPISRQPL--GATSGASLKTQPSSQPLQSG--QVLPSATPTPSAPPTSQQE 430
SST S+ PGP + TSG+S+ QP + S Q+ + PSA P Q
Sbjct: 1618 SSTTSIVAPGPSAEAAAFGTVTSGSSVFAQPPAASSSSAFNQLTNNTATAPSATPVFGQV 1677
Query: 431 LQAKILSLFNSGT-VTANSSSASPSVAAGNTPNQNFSTAANSQPQQRSQASGNQPPSILG 489
+ SLF T TA++++A+P V++ + F T A P + G
Sbjct: 1678 AASTAPSLFGQQTGSTASTAAATPQVSSSGFSSPAFGTTA---------------PGVFG 1722
Query: 490 Q---------GGSAQNMG-----PRPGAPSQGLFGQPSSRLAPASNMTSQRPVSST 531
Q G SA + +PG S FGQP+S +++ + SST
Sbjct: 1723 QTTFGQASVFGQSASSAASVFSFSQPGFSSVPAFGQPASSTPTSTSGSVFGAASST 1778
Score = 37.0 bits (84), Expect = 0.050
Identities = 52/214 (24%), Positives = 82/214 (38%), Gaps = 38/214 (17%)
Query: 377 SSTDSLPGPISRQPLGATSGA-SLKTQPSSQPLQSGQVLPSAT---PTPSAPPTSQQELQ 432
SS+ ++ +P +SG+ S K P P V PS PTP+A P +
Sbjct: 486 SSSLKSSATVTGEPPSYSSGSDSSKAAPGPGPSTFSFVPPSKASLAPTPAASPVAPS--- 542
Query: 433 AKILSLFNSGTVTANSSSASPSVAAGNTP----------------NQNFSTAANSQPQQR 476
A S +SG S+ PSV+A N ++ F+ AA S P
Sbjct: 543 AASFSFGSSGFKPTLESTPVPSVSAPNIAMKPSFPPSTSAVKVNLSEKFTAAATSTPVSS 602
Query: 477 SQASGNQPPSILGQGGSAQNMGPRPGAPSQGLFGQPSSRLAPASNMTSQRPVSSTGINFD 536
SQ++ PP S + +P A G P+ AP S++ + V +
Sbjct: 603 SQSA---PPM------SPFSSASKPAA--SGPLSHPTPLSAPPSSVPLKSSVLPSPSGRS 651
Query: 537 NPSVQKALDTLIQSGPALSHLVSQTTAQMGQPQA 570
+ +++Q P ++ A+ G PQA
Sbjct: 652 AQGSSSPVPSMVQKSPR----ITPPAAKPGSPQA 681
Score = 31.6 bits (70), Expect = 2.1
Identities = 50/197 (25%), Positives = 77/197 (39%), Gaps = 18/197 (9%)
Query: 376 RSSTDSLPGPISRQPLGATSGASLKTQPSSQPLQSGQVLPSATPTPSAPPTSQQELQAKI 435
++S+ SL + G SG + P V SAT T APP + +
Sbjct: 1351 KASSTSLTSTQPTKTSGVPSGFNFTAPPVLGKHTEPPVTSSATTTSVAPPAATSTSSTAV 1410
Query: 436 LSLFNSGTVTANSSSASPSVAAGNTPNQNFSTAANSQPQQRSQASGNQPPSILGQGGSAQ 495
G++ S+ +S ++ G T + S S Q + PPS +A
Sbjct: 1411 F-----GSLPVTSAGSSGVISFGGT---SLSAGKTSFSFGSQQTNSTVPPSAPPPTTAAT 1462
Query: 496 NMGPRPGA-PSQGLFGQPSSRLAPASNMTSQRPVSSTGINFDNPSVQKALDTLIQSGPAL 554
P P + P+ SS P+ M++ R ST + +K D+ + S A
Sbjct: 1463 ---PLPTSFPTLSFGSLLSSATTPSLPMSAGR---STEEATSSALPEKPGDSEV-SASAA 1515
Query: 555 SHLVSQTTAQMGQPQAP 571
S L Q +AQ+ PQAP
Sbjct: 1516 SLLEEQQSAQL--PQAP 1530
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,309,898
Number of Sequences: 37866
Number of extensions: 1364529
Number of successful extensions: 9336
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 632
Number of HSP's that attempted gapping in prelim test: 7308
Number of HSP's gapped (non-prelim): 2178
length of query: 579
length of database: 18,247,518
effective HSP length: 108
effective length of query: 471
effective length of database: 14,157,990
effective search space: 6668413290
effective search space used: 6668413290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.