Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZNF142 Sequence: fasta or formatted (1687aa) NCBI GI: 157676340
Description:

zinc finger protein 142

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4        125           5
 C cysteine            5.7         97           1
 D aspartate           3.4         58           1
 E glutamate           7.9        134           3
 F phenylalanine       3.2         54           2
 G glycine             6.5        110           4
 H histidine           6.9        117           2
 I isoleucine          1.2         21           2
 K lysine              5.8         98           2
 L leucine             8.7        146           3
 M methionine          1.4         23           1
 N asparagine          2.1         36           2
 P proline             9.6        162           3
 Q glutamine           4.7         79           2
 R arginine            6.6        111           2
 S serine              6.6        111           3
 T threonine           6.0        101           2
 V valine              3.7         63           2
 W tryptophan          0.4          6           1
 Y tyrosine            2.1         35           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 142 
ZNF845                0.059   zinc finger protein 845 
ZNF658                0.059   zinc finger protein 658 
ZNF160                0.059   zinc finger protein 160 
ZNF160                0.059   zinc finger protein 160 
ZNF160                0.059   zinc finger protein 160 
ZNF33A                0.057   zinc finger protein 33A isoform b 
ZNF33A                0.057   zinc finger protein 33A isoform a 
ZNF420                0.057   zinc finger protein 420 
LOC100287429          0.057   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.057   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.057   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.057   zinc finger protein 84 
ZNF84                 0.057   zinc finger protein 84 
ZNF135                0.056   zinc finger protein 135 
ZNF470                0.056   zinc finger protein 470 
ZNF808                0.056   zinc finger protein 808 
ZNF425                0.056   zinc finger protein 425 
ZNF585A               0.056   zinc finger protein 585A 
ZNF585A               0.056   zinc finger protein 585A 
LOC388559             0.056   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.056   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.056   PREDICTED: hypothetical protein LOC388559 
ZNF546                0.056   zinc finger protein 546 
ZNF665                0.056   zinc finger protein 665 
ZNF585B               0.056   zinc finger protein 585B 
ZNF33B                0.055   zinc finger protein 33B 
ZNF778                0.055   zinc finger protein 778 
ZNF761                0.055   zinc finger protein 761 
ZNF624                0.055   zinc finger protein 624 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press