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Search of human proteins with 151301080
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|151301080 recombination activating gene 2 [Homo sapiens]
(527 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|151301080 recombination activating gene 2 [Homo sapiens] 1105 0.0
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 37 0.034
gi|42740903 MTERF domain containing 2 [Homo sapiens] 37 0.044
gi|115529449 upstream binding transcription factor, RNA polymera... 37 0.058
gi|115529451 upstream binding transcription factor, RNA polymera... 37 0.058
gi|7657671 upstream binding transcription factor, RNA polymerase... 37 0.058
gi|55769587 probable nucleolar complex protein 14 [Homo sapiens] 36 0.099
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 35 0.13
gi|237512982 voltage-gated sodium channel type V alpha isoform f... 35 0.22
gi|55956788 nucleolin [Homo sapiens] 35 0.22
gi|47717139 leucine-zipper-like transcription regulator 1 [Homo ... 35 0.22
gi|34878777 ring finger protein 20 [Homo sapiens] 34 0.38
gi|210032580 SET domain containing 1B [Homo sapiens] 34 0.38
gi|33620763 sno, strawberry notch homolog 1 [Homo sapiens] 34 0.38
gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 33 0.49
gi|38788260 bromodomain PHD finger transcription factor isoform ... 33 0.49
gi|38788274 bromodomain PHD finger transcription factor isoform ... 33 0.49
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 33 0.64
gi|93102405 hypothetical protein LOC84182 [Homo sapiens] 33 0.84
gi|225735631 mesoderm induction early response 1 isoform g [Homo... 33 0.84
gi|225735619 mesoderm induction early response 1 isoform i [Homo... 33 0.84
gi|225735617 mesoderm induction early response 1 isoform h [Homo... 33 0.84
gi|225735615 mesoderm induction early response 1 isoform a [Homo... 33 0.84
gi|118130872 mesoderm induction early response 1 isoform f [Homo... 33 0.84
gi|225735612 mesoderm induction early response 1 isoform e [Homo... 33 0.84
gi|225735610 mesoderm induction early response 1 isoform d [Homo... 33 0.84
gi|118130815 mesoderm induction early response 1 isoform c [Homo... 33 0.84
gi|225735607 mesoderm induction early response 1 isoform b [Homo... 33 0.84
gi|225735605 mesoderm induction early response 1 isoform a [Homo... 33 0.84
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 33 0.84
>gi|151301080 recombination activating gene 2 [Homo sapiens]
Length = 527
Score = 1105 bits (2859), Expect = 0.0
Identities = 527/527 (100%), Positives = 527/527 (100%)
Query: 1 MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT 60
MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT
Sbjct: 1 MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT 60
Query: 61 IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV 120
IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV
Sbjct: 61 IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV 120
Query: 121 TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP 180
TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP
Sbjct: 121 TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP 180
Query: 181 CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL 240
CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL
Sbjct: 181 CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL 240
Query: 241 PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR 300
PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR
Sbjct: 241 PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR 300
Query: 301 EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT 360
EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT
Sbjct: 301 EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT 360
Query: 361 TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC 420
TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC
Sbjct: 361 TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC 420
Query: 421 PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE 480
PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE
Sbjct: 421 PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE 480
Query: 481 HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD 527
HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD
Sbjct: 481 HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD 527
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 37.4 bits (85), Expect = 0.034
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 351 AEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDE 410
+ D +N ++ +++ + + D DS+ DS+ S +NS D D D+ N D D
Sbjct: 823 SSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDS 882
Query: 411 SET 413
S++
Sbjct: 883 SDS 885
Score = 32.7 bits (73), Expect = 0.84
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 351 AEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDE 410
+ D +N ++ ++ + + D DS+ DS + S +NS D D D+ + D D
Sbjct: 1018 SSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDS--SDSSNSSDSSDSSDSSDSSDSSDS 1075
Query: 411 SET 413
S++
Sbjct: 1076 SDS 1078
Score = 30.8 bits (68), Expect = 3.2
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 354 DTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESET 413
D+N ++ +++ + + D DS+ DS + S ++S D D D+ N D + S++
Sbjct: 970 DSNSSDSSDSSNSSDSSDSSDSSDSSDSSD--SSNSSDSSDSSDSSDSSNSSDSSNSSDS 1027
Score = 30.4 bits (67), Expect = 4.2
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 351 AEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDE 410
+ D ++ + + +S S DS+ DS+ S +NS D D D+ + D D
Sbjct: 563 SSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDS---SDSSNSSDSSDSSDSSDSSDSSDS 619
Query: 411 SET 413
S++
Sbjct: 620 SDS 622
Score = 30.4 bits (67), Expect = 4.2
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 353 DDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDT--YNEDDEEDE 410
D ++ ++ ++ + + D DS+ DS+ +E++S D D + D+ N D D
Sbjct: 594 DSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDN 653
Query: 411 SET 413
S++
Sbjct: 654 SDS 656
Score = 30.0 bits (66), Expect = 5.4
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 351 AEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSE--EFCFSAEANSFDGD-----DEFDTYN 403
+ D +N ++ ++ +++ + DS+ DS+ + S+ +NS D D D D+ N
Sbjct: 680 SSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSN 739
Query: 404 EDDEEDESET 413
D D S++
Sbjct: 740 SSDSSDSSDS 749
Score = 30.0 bits (66), Expect = 5.4
Identities = 13/62 (20%), Positives = 31/62 (50%)
Query: 351 AEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDE 410
+ + ++ ++ ++ +++ D DS+ DS+ S +NS D D ++ + D D
Sbjct: 788 SSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDS 847
Query: 411 SE 412
S+
Sbjct: 848 SD 849
Score = 30.0 bits (66), Expect = 5.4
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 354 DTNEEQTTFTNSQTSTE---DPGDSTPFEDSEEFCFSAE----ANSFDGDDEFDTYNEDD 406
D+NE + +S +S D DS+ DS + S++ +NS D + D+ N D
Sbjct: 884 DSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSD 943
Query: 407 EEDESET 413
D S++
Sbjct: 944 SSDSSDS 950
Score = 30.0 bits (66), Expect = 5.4
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 351 AEDDTNEEQTTFTNSQTSTEDPG---DSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDE 407
+ D++N ++ ++ + + D DS+ DS S+++NS D D ++ + D
Sbjct: 929 SSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDS 988
Query: 408 EDESET 413
D S++
Sbjct: 989 SDSSDS 994
Score = 30.0 bits (66), Expect = 5.4
Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 351 AEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEA-NSFDGDDEFDTYNEDDEED 409
+ D ++ ++ +++ + + D DS+ +S + S+++ NS D D D+ + D D
Sbjct: 988 SSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSD 1047
Query: 410 ESET 413
S++
Sbjct: 1048 SSDS 1051
Score = 29.3 bits (64), Expect = 9.3
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 351 AEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEAN----SFDGDD---EFDTYN 403
+ D +N ++ ++ +++ D DS+ DS + S+++N S D D D+ N
Sbjct: 746 SSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSN 805
Query: 404 EDDEEDESET 413
D D S++
Sbjct: 806 SSDSSDSSDS 815
Score = 29.3 bits (64), Expect = 9.3
Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 351 AEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAE-ANSFDGDDEFDTYNEDDEED 409
+ D ++ ++ ++ + + D DS+ DS + S++ ++S D D D+ D D
Sbjct: 1180 SSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSNESSDSSD 1239
Query: 410 ESET 413
S++
Sbjct: 1240 SSDS 1243
>gi|42740903 MTERF domain containing 2 [Homo sapiens]
Length = 381
Score = 37.0 bits (84), Expect = 0.044
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 341 EGFYFYMLKCAEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFD 400
E F + A ++ E +T + + S ++ D ED++E + N D DDE D
Sbjct: 311 EEFQVFKKLLAREEEESESSTSDDKRASLDEDEDDDDEEDNDE-----DDNDEDDDDEDD 365
Query: 401 TYNEDDEEDESE 412
ED++EDE +
Sbjct: 366 DEAEDNDEDEDD 377
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 36.6 bits (83), Expect = 0.058
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDES 411
++D +EE+ N +S ED GDS+ SE+ + N D +DE D ++D++ED
Sbjct: 650 DEDEDEEEEDDENGDSS-EDGGDSSE-SSSEDESEDGDENEEDDEDEDDDEDDDEDEDNE 707
Query: 412 ETG 414
G
Sbjct: 708 SEG 710
Score = 32.7 bits (73), Expect = 0.84
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDES 411
EDD +E + + ++ GDS SE+ S+E++S D ++ D EDDE+++
Sbjct: 642 EDDEEDEDDEDEDEEEEDDENGDS-----SEDGGDSSESSSEDESEDGDENEEDDEDEDD 696
Query: 412 E 412
+
Sbjct: 697 D 697
Score = 29.3 bits (64), Expect = 9.3
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 347 MLKCAEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAE--ANSFDGDDEFDTYNE 404
M K + +TT + S ED + ED +E E +S DG D ++ +E
Sbjct: 619 MTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSE 678
Query: 405 DDEEDESE 412
D+ ED E
Sbjct: 679 DESEDGDE 686
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 36.6 bits (83), Expect = 0.058
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDES 411
++D +EE+ N +S ED GDS+ SE+ + N D +DE D ++D++ED
Sbjct: 650 DEDEDEEEEDDENGDSS-EDGGDSSE-SSSEDESEDGDENEEDDEDEDDDEDDDEDEDNE 707
Query: 412 ETG 414
G
Sbjct: 708 SEG 710
Score = 32.7 bits (73), Expect = 0.84
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDES 411
EDD +E + + ++ GDS SE+ S+E++S D ++ D EDDE+++
Sbjct: 642 EDDEEDEDDEDEDEEEEDDENGDS-----SEDGGDSSESSSEDESEDGDENEEDDEDEDD 696
Query: 412 E 412
+
Sbjct: 697 D 697
Score = 29.3 bits (64), Expect = 9.3
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 347 MLKCAEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAE--ANSFDGDDEFDTYNE 404
M K + +TT + S ED + ED +E E +S DG D ++ +E
Sbjct: 619 MTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSE 678
Query: 405 DDEEDESE 412
D+ ED E
Sbjct: 679 DESEDGDE 686
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 36.6 bits (83), Expect = 0.058
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDES 411
++D +EE+ N +S ED GDS+ SE+ + N D +DE D ++D++ED
Sbjct: 687 DEDEDEEEEDDENGDSS-EDGGDSSE-SSSEDESEDGDENEEDDEDEDDDEDDDEDEDNE 744
Query: 412 ETG 414
G
Sbjct: 745 SEG 747
Score = 32.7 bits (73), Expect = 0.84
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDES 411
EDD +E + + ++ GDS SE+ S+E++S D ++ D EDDE+++
Sbjct: 679 EDDEEDEDDEDEDEEEEDDENGDS-----SEDGGDSSESSSEDESEDGDENEEDDEDEDD 733
Query: 412 E 412
+
Sbjct: 734 D 734
Score = 29.3 bits (64), Expect = 9.3
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 347 MLKCAEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAE--ANSFDGDDEFDTYNE 404
M K + +TT + S ED + ED +E E +S DG D ++ +E
Sbjct: 656 MTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSE 715
Query: 405 DDEEDESE 412
D+ ED E
Sbjct: 716 DESEDGDE 723
>gi|55769587 probable nucleolar complex protein 14 [Homo sapiens]
Length = 857
Score = 35.8 bits (81), Expect = 0.099
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 299 IREMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEE 358
+R M D ++K K ++ +G V + D+++++S Y E+D EE
Sbjct: 294 LRRMLGKDEDENVKKPKHMSADDLNDGFV---LDKDDRRLLS---YKDGKMNVEEDVQEE 347
Query: 359 QTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDE 410
Q+ + S E+ GDS+ ED+E E++S D + ++ E +EE+E
Sbjct: 348 QSKEASDPESNEEEGDSSGGEDTE------ESDSPDSHLDLESNVESEEENE 393
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 35.4 bits (80), Expect = 0.13
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 346 YMLKCAEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNED 405
Y K D N S+ E+ + ED EE E + D D+E D ED
Sbjct: 298 YRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEE-----EKDEEDEDEEDDEDEED 352
Query: 406 DEEDESETGYWITCCP 421
++++S ++ CCP
Sbjct: 353 GDDEQSHWQLFLACCP 368
>gi|237512982 voltage-gated sodium channel type V alpha isoform f
[Homo sapiens]
Length = 1962
Score = 34.7 bits (78), Expect = 0.22
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 12/125 (9%)
Query: 303 ETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQTTF 362
ET P K ++ G G GT PGD + V + AE DT++++
Sbjct: 1015 ETEKVPPTRKETRFEEGEQPGQGT-----PGDPEPVCVP------IAVAESDTDDQEEDE 1063
Query: 363 TNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDES-ETGYWITCCP 421
NS + E+ TP + E + N+ + ++ +D ++ E T + CP
Sbjct: 1064 ENSLGTEEESSKQTPEDSCSEGSTADMTNTAELLEQIPDLGQDVKDPEDCFTEGCVRRCP 1123
Query: 422 TCDVD 426
C VD
Sbjct: 1124 CCAVD 1128
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 34.7 bits (78), Expect = 0.22
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDES 411
EDD +EE + + ED + P A + D DDE D ++DDEED+S
Sbjct: 149 EDDDSEEDE--EDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDS 206
Query: 412 E 412
E
Sbjct: 207 E 207
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEE----FCFSAEANSFDGDDEFDTYNEDDE 407
++D++EE+ +S+ ED D ED E +A S D DDE D +EDD+
Sbjct: 142 KEDSDEEEDD--DSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDD 199
Query: 408 EDESE 412
+DE +
Sbjct: 200 DDEED 204
Score = 30.8 bits (68), Expect = 3.2
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 17/78 (21%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPF-----------------EDSEEFCFSAEANSFD 394
EDD ++E S E+ ++TP ED +E + + D
Sbjct: 190 EDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDD 249
Query: 395 GDDEFDTYNEDDEEDESE 412
+D+ D +EDDEE+E E
Sbjct: 250 DEDDEDDDDEDDEEEEEE 267
>gi|47717139 leucine-zipper-like transcription regulator 1 [Homo
sapiens]
Length = 840
Score = 34.7 bits (78), Expect = 0.22
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 182 VFLVDFEFGCATSYILP--ELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIR 237
VF +DF A P EL G FH + +D +YI GG ++ NNIR +YR +
Sbjct: 364 VFGLDFGTTSAKQPTQPASELPSGRLFHAAAVISDAMYIFGG-TVDNNIRSGEMYRFQ 420
>gi|34878777 ring finger protein 20 [Homo sapiens]
Length = 975
Score = 33.9 bits (76), Expect = 0.38
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 266 TNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR---EMETPDWTPDIKHSKIWFGSNM 322
T+ + ++ ++ K++ +I LED ++R EM ++ + ++ N
Sbjct: 415 THQHQVELIERDEVSLHKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQTLAANEQAGPINR 474
Query: 323 GNGTVFLGIPGDNKQVVSEGF-YFYMLKCAEDDTNEEQ----TTFTNSQTSTEDPGDSTP 377
+ + N Q+ E Y L+ A+ D N+ + + SQ+STEDP D P
Sbjct: 475 EMRHLISSLQNHNHQLKGEVLRYKRKLREAQSDLNKTRLRSGSALLQSQSSTEDPKDE-P 533
Query: 378 FE---DSEEFCFSAEANSFDGDDEFDTYNEDDEED 409
E DSE+ + A+ +D + ++ DEE+
Sbjct: 534 AELKPDSEDLSSQSSASKASQEDANEIKSKRDEEE 568
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 33.9 bits (76), Expect = 0.38
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDES 411
E D++EE+T + TS + S+ +S EF S+E++ +DE + ++EE+E
Sbjct: 1091 EGDSDEEETV--SIVTSKAEATSSSESSESSEFESSSESSPSSSEDEEEVVAREEEEEEE 1148
Query: 412 E 412
E
Sbjct: 1149 E 1149
>gi|33620763 sno, strawberry notch homolog 1 [Homo sapiens]
Length = 1392
Score = 33.9 bits (76), Expect = 0.38
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 367 TSTEDPGDSTPFEDSEEFCFSAEANSFDGDDE-----FDTYNEDDEED 409
+S++D G + D+EE + + N GDD+ D NEDDE D
Sbjct: 727 SSSDDSGSESDASDNEESDYESSKNMSSGDDDDFNPFLDESNEDDESD 774
>gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member A [Homo sapiens]
Length = 249
Score = 33.5 bits (75), Expect = 0.49
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 330 GIPGDNKQVVSEGFYFYMLKCAEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAE 389
G D+K+ Y+ +++ +E++ + ED D E+ EE S E
Sbjct: 147 GYDRDDKEAPDSDAEGYVEGLDDEEEDEDEEEYDEDAQVVEDEEDEDEEEEGEEEDVSGE 206
Query: 390 ANSFDGDDEFDTYNEDDEEDESETG 414
+ ++ ++ DDEEDE E G
Sbjct: 207 EE--EDEEGYNDGEVDDEEDEEELG 229
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 33.5 bits (75), Expect = 0.49
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDES 411
E + EE+ + + ED GD+ +DSE+ E + + DD+ Y E+ E+D+
Sbjct: 130 ESEEEEEEEDMVSEEEEEED-GDAEETQDSED----DEEDEMEEDDDDSDYPEEMEDDDD 184
Query: 412 ETGY 415
+ Y
Sbjct: 185 DASY 188
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 33.5 bits (75), Expect = 0.49
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDES 411
E + EE+ + + ED GD+ +DSE+ E + + DD+ Y E+ E+D+
Sbjct: 130 ESEEEEEEEDMVSEEEEEED-GDAEETQDSED----DEEDEMEEDDDDSDYPEEMEDDDD 184
Query: 412 ETGY 415
+ Y
Sbjct: 185 DASY 188
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 33.1 bits (74), Expect = 0.64
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 346 YMLKCAEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNED 405
Y K D N S+ E+ + ED EE E + D D+E D ED
Sbjct: 298 YRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEE-----EKDEEDEDEEDD---ED 349
Query: 406 DEED-ESETGYW---ITCCP 421
+EED + E +W + CCP
Sbjct: 350 EEEDGDDEQSHWQLFLACCP 369
>gi|93102405 hypothetical protein LOC84182 [Homo sapiens]
Length = 757
Score = 32.7 bits (73), Expect = 0.84
Identities = 20/50 (40%), Positives = 23/50 (46%)
Query: 81 KGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKVTFRCTEKDLV 130
K SLE ++ H G T NN D V K N KV RC+E LV
Sbjct: 68 KTSLELITRYFLDHFGNTANNFTQDTPIPALSVPKKNNKVPSRCSETTLV 117
>gi|225735631 mesoderm induction early response 1 isoform g [Homo
sapiens]
Length = 470
Score = 32.7 bits (73), Expect = 0.84
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEE 408
+D + +E T Q+S +DP S +D++E FD + E + +E+DE+
Sbjct: 136 KDSSGQEDET----QSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEVEEESEEDED 188
>gi|225735619 mesoderm induction early response 1 isoform i [Homo
sapiens]
Length = 370
Score = 32.7 bits (73), Expect = 0.84
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEE 408
+D + +E T Q+S +DP S +D++E FD + E + +E+DE+
Sbjct: 56 KDSSGQEDET----QSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEVEEESEEDED 108
>gi|225735617 mesoderm induction early response 1 isoform h [Homo
sapiens]
Length = 485
Score = 32.7 bits (73), Expect = 0.84
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEE 408
+D + +E T Q+S +DP S +D++E FD + E + +E+DE+
Sbjct: 92 KDSSGQEDET----QSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEVEEESEEDED 144
>gi|225735615 mesoderm induction early response 1 isoform a [Homo
sapiens]
Length = 529
Score = 32.7 bits (73), Expect = 0.84
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEE 408
+D + +E T Q+S +DP S +D++E FD + E + +E+DE+
Sbjct: 136 KDSSGQEDET----QSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEVEEESEEDED 188
>gi|118130872 mesoderm induction early response 1 isoform f [Homo
sapiens]
Length = 433
Score = 32.7 bits (73), Expect = 0.84
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEE 408
+D + +E T Q+S +DP S +D++E FD + E + +E+DE+
Sbjct: 119 KDSSGQEDET----QSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEVEEESEEDED 171
>gi|225735612 mesoderm induction early response 1 isoform e [Homo
sapiens]
Length = 486
Score = 32.7 bits (73), Expect = 0.84
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEE 408
+D + +E T Q+S +DP S +D++E FD + E + +E+DE+
Sbjct: 172 KDSSGQEDET----QSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEVEEESEEDED 224
>gi|225735610 mesoderm induction early response 1 isoform d [Homo
sapiens]
Length = 450
Score = 32.7 bits (73), Expect = 0.84
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEE 408
+D + +E T Q+S +DP S +D++E FD + E + +E+DE+
Sbjct: 136 KDSSGQEDET----QSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEVEEESEEDED 188
>gi|118130815 mesoderm induction early response 1 isoform c [Homo
sapiens]
Length = 512
Score = 32.7 bits (73), Expect = 0.84
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEE 408
+D + +E T Q+S +DP S +D++E FD + E + +E+DE+
Sbjct: 119 KDSSGQEDET----QSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEVEEESEEDED 171
>gi|225735607 mesoderm induction early response 1 isoform b [Homo
sapiens]
Length = 565
Score = 32.7 bits (73), Expect = 0.84
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEE 408
+D + +E T Q+S +DP S +D++E FD + E + +E+DE+
Sbjct: 172 KDSSGQEDET----QSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEVEEESEEDED 224
>gi|225735605 mesoderm induction early response 1 isoform a [Homo
sapiens]
Length = 529
Score = 32.7 bits (73), Expect = 0.84
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 352 EDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEE 408
+D + +E T Q+S +DP S +D++E FD + E + +E+DE+
Sbjct: 136 KDSSGQEDET----QSSNDDPSQSVASQDAQEIIRPRRCKYFDTNSEVEEESEEDED 188
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 32.7 bits (73), Expect = 0.84
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 346 YMLKCAEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNED 405
Y K D N S+ E+ + ED EE D D+E D ED
Sbjct: 298 YRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEE------EKDEDEDEEDDEDEED 351
Query: 406 DEEDESETGYWITCCP 421
++++S ++ CCP
Sbjct: 352 GDDEQSHWQLFLACCP 367
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,282,023
Number of Sequences: 37866
Number of extensions: 1091141
Number of successful extensions: 3739
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 3293
Number of HSP's gapped (non-prelim): 384
length of query: 527
length of database: 18,247,518
effective HSP length: 107
effective length of query: 420
effective length of database: 14,195,856
effective search space: 5962259520
effective search space used: 5962259520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.