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Search of human proteins with 109948292
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109948292 hypothetical protein LOC57614 [Homo sapiens]
(1216 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|109948292 hypothetical protein LOC57614 [Homo sapiens] 2402 0.0
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 43 0.002
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 41 0.006
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 41 0.006
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 41 0.006
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 41 0.006
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 41 0.006
gi|160420295 hypothetical protein LOC85459 [Homo sapiens] 41 0.006
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 40 0.018
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 39 0.030
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 39 0.030
gi|156104908 myosin heavy chain 6 [Homo sapiens] 39 0.030
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap... 37 0.088
gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo sapi... 37 0.088
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 37 0.088
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 37 0.088
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 37 0.088
gi|89886480 zinedin isoform 2 [Homo sapiens] 37 0.088
gi|89886477 zinedin isoform 1 [Homo sapiens] 37 0.088
gi|226437602 NK1 homeobox 2 [Homo sapiens] 37 0.11
gi|48762934 alpha 2 type I collagen [Homo sapiens] 37 0.11
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 37 0.11
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 37 0.11
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 37 0.11
gi|14249622 ajuba isoform 1 [Homo sapiens] 37 0.11
gi|210031154 zinc finger protein 541 [Homo sapiens] 37 0.15
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 36 0.20
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 36 0.20
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 36 0.20
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 36 0.20
>gi|109948292 hypothetical protein LOC57614 [Homo sapiens]
Length = 1216
Score = 2402 bits (6225), Expect = 0.0
Identities = 1216/1216 (100%), Positives = 1216/1216 (100%)
Query: 1 MAAMAPGGSGSGGGVNPFLSDSDEDDDEVAATEERRAVLRLGAGSGLDPGSAGSLSPQDP 60
MAAMAPGGSGSGGGVNPFLSDSDEDDDEVAATEERRAVLRLGAGSGLDPGSAGSLSPQDP
Sbjct: 1 MAAMAPGGSGSGGGVNPFLSDSDEDDDEVAATEERRAVLRLGAGSGLDPGSAGSLSPQDP 60
Query: 61 VALGSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYLLTALELHTELLES 120
VALGSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYLLTALELHTELLES
Sbjct: 61 VALGSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYLLTALELHTELLES 120
Query: 121 GRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNRAGS 180
GRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNRAGS
Sbjct: 121 GRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNRAGS 180
Query: 181 ISTLDSLDFARYSDDGNRETDEKVAVLEFELRKAKETIQALRANLTKAAEHEVPLQERKN 240
ISTLDSLDFARYSDDGNRETDEKVAVLEFELRKAKETIQALRANLTKAAEHEVPLQERKN
Sbjct: 181 ISTLDSLDFARYSDDGNRETDEKVAVLEFELRKAKETIQALRANLTKAAEHEVPLQERKN 240
Query: 241 YKSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFSDENDDQDFELWDDVGLNIPK 300
YKSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFSDENDDQDFELWDDVGLNIPK
Sbjct: 241 YKSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFSDENDDQDFELWDDVGLNIPK 300
Query: 301 PPDLLQLYRDFGNHQVTGKDLVDVASGVEEDELEALTPIISNLPPTLETPQPAENSMLVQ 360
PPDLLQLYRDFGNHQVTGKDLVDVASGVEEDELEALTPIISNLPPTLETPQPAENSMLVQ
Sbjct: 301 PPDLLQLYRDFGNHQVTGKDLVDVASGVEEDELEALTPIISNLPPTLETPQPAENSMLVQ 360
Query: 361 KLEDKISLLNSEKWSLMEQIRRLKSEMDFLKNEHFAIPAVCDSVQPPLDQLPHKDSEDSG 420
KLEDKISLLNSEKWSLMEQIRRLKSEMDFLKNEHFAIPAVCDSVQPPLDQLPHKDSEDSG
Sbjct: 361 KLEDKISLLNSEKWSLMEQIRRLKSEMDFLKNEHFAIPAVCDSVQPPLDQLPHKDSEDSG 420
Query: 421 QHPDVNSSDKGKNTDIHLSISDEADSTIPKENSPNSFPRREREGMPPSSLSSKKTVHFDK 480
QHPDVNSSDKGKNTDIHLSISDEADSTIPKENSPNSFPRREREGMPPSSLSSKKTVHFDK
Sbjct: 421 QHPDVNSSDKGKNTDIHLSISDEADSTIPKENSPNSFPRREREGMPPSSLSSKKTVHFDK 480
Query: 481 PNRKLSPAFHQALLSFCRMSADSRLGYEVSRIADSEKSVMLMLGRCLPHIVPNVLLAKRE 540
PNRKLSPAFHQALLSFCRMSADSRLGYEVSRIADSEKSVMLMLGRCLPHIVPNVLLAKRE
Sbjct: 481 PNRKLSPAFHQALLSFCRMSADSRLGYEVSRIADSEKSVMLMLGRCLPHIVPNVLLAKRE 540
Query: 541 ELIPLILCTACLHPEPKERDQLLHILFNLIKRPDDEQRQMILTGCVAFARHVGPTRVEAE 600
ELIPLILCTACLHPEPKERDQLLHILFNLIKRPDDEQRQMILTGCVAFARHVGPTRVEAE
Sbjct: 541 ELIPLILCTACLHPEPKERDQLLHILFNLIKRPDDEQRQMILTGCVAFARHVGPTRVEAE 600
Query: 601 LLPQCWEQINHKYPERRLLVAESCGALAPYLPKEIRSSLVLSMLQQMLMEDKADLVREAV 660
LLPQCWEQINHKYPERRLLVAESCGALAPYLPKEIRSSLVLSMLQQMLMEDKADLVREAV
Sbjct: 601 LLPQCWEQINHKYPERRLLVAESCGALAPYLPKEIRSSLVLSMLQQMLMEDKADLVREAV 660
Query: 661 IKSLGIIMGYIDDPDKYHQGFELLLSALGDPSERVVSATHQVFLPAYAAWTTELGNLQSH 720
IKSLGIIMGYIDDPDKYHQGFELLLSALGDPSERVVSATHQVFLPAYAAWTTELGNLQSH
Sbjct: 661 IKSLGIIMGYIDDPDKYHQGFELLLSALGDPSERVVSATHQVFLPAYAAWTTELGNLQSH 720
Query: 721 LILTLLNKIEKLLREGEHGLDEHKLHMYLSALQSLIPSLFALVLQNAPFSSKAKLHGEVP 780
LILTLLNKIEKLLREGEHGLDEHKLHMYLSALQSLIPSLFALVLQNAPFSSKAKLHGEVP
Sbjct: 721 LILTLLNKIEKLLREGEHGLDEHKLHMYLSALQSLIPSLFALVLQNAPFSSKAKLHGEVP 780
Query: 781 QIEVTRFPRPMSPLQDVSTIIGSREQLAVLLQLYDYQLEQEGTTGWESLLWVVNQLLPQL 840
QIEVTRFPRPMSPLQDVSTIIGSREQLAVLLQLYDYQLEQEGTTGWESLLWVVNQLLPQL
Sbjct: 781 QIEVTRFPRPMSPLQDVSTIIGSREQLAVLLQLYDYQLEQEGTTGWESLLWVVNQLLPQL 840
Query: 841 IEIVGKINVTSTACVHEFSRFFWRLCRTFGKIFTNTKVKPQFQEILRLSEENIDSSAGNG 900
IEIVGKINVTSTACVHEFSRFFWRLCRTFGKIFTNTKVKPQFQEILRLSEENIDSSAGNG
Sbjct: 841 IEIVGKINVTSTACVHEFSRFFWRLCRTFGKIFTNTKVKPQFQEILRLSEENIDSSAGNG 900
Query: 901 VLTKATVPIYATGVLTCYIQEEDRKLLVGFLEDVMTLLSLSHAPLDSLKASFVELGANPA 960
VLTKATVPIYATGVLTCYIQEEDRKLLVGFLEDVMTLLSLSHAPLDSLKASFVELGANPA
Sbjct: 901 VLTKATVPIYATGVLTCYIQEEDRKLLVGFLEDVMTLLSLSHAPLDSLKASFVELGANPA 960
Query: 961 YHELLLTVLWYGVVHTSALVRCTAARMFELTLRGMSEALVDKRVAPALVTLSSDPEFSVR 1020
YHELLLTVLWYGVVHTSALVRCTAARMFELTLRGMSEALVDKRVAPALVTLSSDPEFSVR
Sbjct: 961 YHELLLTVLWYGVVHTSALVRCTAARMFELTLRGMSEALVDKRVAPALVTLSSDPEFSVR 1020
Query: 1021 IATIPAFGTIMETVIQRELLERVKMQLASFLEDPQYQDQHSLHTEIIKTFGRVGPNAEPR 1080
IATIPAFGTIMETVIQRELLERVKMQLASFLEDPQYQDQHSLHTEIIKTFGRVGPNAEPR
Sbjct: 1021 IATIPAFGTIMETVIQRELLERVKMQLASFLEDPQYQDQHSLHTEIIKTFGRVGPNAEPR 1080
Query: 1081 FRDEFVIPHLHKLALVNNLQIVDSKRLDIATHLFEAYSALSCCFISEDLMVNHFLPGLRC 1140
FRDEFVIPHLHKLALVNNLQIVDSKRLDIATHLFEAYSALSCCFISEDLMVNHFLPGLRC
Sbjct: 1081 FRDEFVIPHLHKLALVNNLQIVDSKRLDIATHLFEAYSALSCCFISEDLMVNHFLPGLRC 1140
Query: 1141 LRTDMEHLSPEHEVILSSMIKECEQKVENKTVQEPQGSMSIAASLVSEDTKTKFLNKMGQ 1200
LRTDMEHLSPEHEVILSSMIKECEQKVENKTVQEPQGSMSIAASLVSEDTKTKFLNKMGQ
Sbjct: 1141 LRTDMEHLSPEHEVILSSMIKECEQKVENKTVQEPQGSMSIAASLVSEDTKTKFLNKMGQ 1200
Query: 1201 LTTSGAMLANVFQRKK 1216
LTTSGAMLANVFQRKK
Sbjct: 1201 LTTSGAMLANVFQRKK 1216
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 42.7 bits (99), Expect = 0.002
Identities = 44/169 (26%), Positives = 67/169 (39%), Gaps = 15/169 (8%)
Query: 6 PGGSGSGGGVNP-----FLSDSDEDDDEVAATEERRAVLRLGAGSGLDPGSAGSLSPQDP 60
PG G+ G P F D AA ++ +A + AG PG +GS+ P P
Sbjct: 1343 PGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGP 1402
Query: 61 VA-LGSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYLLT---ALELHTE 116
G PG PG + + + G G ++ D I + +R + + + +T
Sbjct: 1403 PGPAGERGHPGAPGPSGSPGLP-GVPGSMGDMVNYDEIK-RFIRQEIIKMFDERMAYYTS 1460
Query: 117 LLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGRE 165
++ E+ PG + G P GAPG PG G G GR+
Sbjct: 1461 RMQFPMEMAAAPGRPGPPG----KDGAPGRPGAPGSPGLPGQIGREGRQ 1505
Score = 32.7 bits (73), Expect = 2.2
Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 2/130 (1%)
Query: 44 GSGLDPGSAGSLS-PQDPVALGSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLL 102
G+ +PG+ G P P +G PG PG A +AV L G + + Q
Sbjct: 1273 GAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPG 1332
Query: 103 RDQYLLTALELHTELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAG 162
+ E T+ +G+E P + F P + G G G G AG+ G
Sbjct: 1333 PPGHPGPPGEPGTD-GAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGP 1391
Query: 163 GREPSTASGG 172
G+ S G
Sbjct: 1392 GKSGSMGPVG 1401
Score = 31.2 bits (69), Expect = 6.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 145 PGMGAPGVPGAAGVGGAGGREPSTASGG 172
PG G PG+PG AGV G G + + G
Sbjct: 581 PGFGLPGLPGRAGVPGLKGEKGNFGEAG 608
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 41.2 bits (95), Expect = 0.006
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 17/131 (12%)
Query: 49 PGSAGSLSPQDPVALGSSARPGLPGE-----ASAAAVALGGTGETPARLSIDAIAAQLLR 103
PG GS P P G S +PG PG+ S G G+ ++ + A+A Q+
Sbjct: 1692 PGPPGS--PGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVARQVC- 1748
Query: 104 DQYLLTALELHTELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGG 163
+Q + + ++L ++P DY S+ Q G P G PG GA G G GG
Sbjct: 1749 EQLISGQMNRFNQMLN---QIPN--DYQSS----RNQPGPPGPPGPPGSAGARGEPGPGG 1799
Query: 164 REPSTASGGGQ 174
R + G Q
Sbjct: 1800 RPGFPGTPGMQ 1810
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 41.2 bits (95), Expect = 0.006
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 17/131 (12%)
Query: 49 PGSAGSLSPQDPVALGSSARPGLPGE-----ASAAAVALGGTGETPARLSIDAIAAQLLR 103
PG GS P P G S +PG PG+ S G G+ ++ + A+A Q+
Sbjct: 2856 PGPPGS--PGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVARQVC- 2912
Query: 104 DQYLLTALELHTELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGG 163
+Q + + ++L ++P DY S+ Q G P G PG GA G G GG
Sbjct: 2913 EQLISGQMNRFNQMLN---QIPN--DYQSS----RNQPGPPGPPGPPGSAGARGEPGPGG 2963
Query: 164 REPSTASGGGQ 174
R + G Q
Sbjct: 2964 RPGFPGTPGMQ 2974
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 41.2 bits (95), Expect = 0.006
Identities = 45/168 (26%), Positives = 59/168 (35%), Gaps = 8/168 (4%)
Query: 7 GGSGSGGGVNPFLSDSDEDDDEVAATEERRAVLRLGAGSGLDPGSAGSLSPQDPVALGSS 66
GGSG GGG + AA A G G G SAG P G
Sbjct: 260 GGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGG 319
Query: 67 ARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYLLTALELHTELLESGRELPR 126
G PG AA+++ G A Q +Q+ A +LL S P
Sbjct: 320 MMMG-PGGGGAASLSKAAAGSAAG--GFQRFAGQ---NQHPSGATPTLNQLLTSPS--PM 371
Query: 127 LRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQ 174
+R Y + + S PP P AA AGG++ + G G+
Sbjct: 372 MRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGK 419
Score = 32.7 bits (73), Expect = 2.2
Identities = 48/183 (26%), Positives = 59/183 (32%), Gaps = 21/183 (11%)
Query: 5 APGGSGSGGGVNPFLSDSDEDDDEVAATEERRAVLRLGAGSGLDPGSAGSLSPQDPVAL- 63
A GG G P LS ++DD E G PG + Q PVA+
Sbjct: 108 AAGGQADPPGP-PLLSKPGDEDDAPPKMGEP------AGGRYEHPGLGALGTQQPPVAVP 160
Query: 64 ----GSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYLLTALELHTELLE 119
G +A P +AA A GG G A D Q ++ +
Sbjct: 161 GGGGGPAAVPEFNNYYGSAAPASGGPGGR-AGPCFDQHGGQQSPGMGMMHSASA------ 213
Query: 120 SGRELPRLRDYFSNP--GNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNR 177
+ P D N G Q PG PG G G GG GG GGG
Sbjct: 214 AAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGA 273
Query: 178 AGS 180
G+
Sbjct: 274 GGA 276
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 41.2 bits (95), Expect = 0.006
Identities = 45/168 (26%), Positives = 59/168 (35%), Gaps = 8/168 (4%)
Query: 7 GGSGSGGGVNPFLSDSDEDDDEVAATEERRAVLRLGAGSGLDPGSAGSLSPQDPVALGSS 66
GGSG GGG + AA A G G G SAG P G
Sbjct: 260 GGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGG 319
Query: 67 ARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYLLTALELHTELLESGRELPR 126
G PG AA+++ G A Q +Q+ A +LL S P
Sbjct: 320 MMMG-PGGGGAASLSKAAAGSAAG--GFQRFAGQ---NQHPSGATPTLNQLLTSPS--PM 371
Query: 127 LRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQ 174
+R Y + + S PP P AA AGG++ + G G+
Sbjct: 372 MRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGK 419
Score = 32.7 bits (73), Expect = 2.2
Identities = 48/183 (26%), Positives = 59/183 (32%), Gaps = 21/183 (11%)
Query: 5 APGGSGSGGGVNPFLSDSDEDDDEVAATEERRAVLRLGAGSGLDPGSAGSLSPQDPVAL- 63
A GG G P LS ++DD E G PG + Q PVA+
Sbjct: 108 AAGGQADPPGP-PLLSKPGDEDDAPPKMGEP------AGGRYEHPGLGALGTQQPPVAVP 160
Query: 64 ----GSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYLLTALELHTELLE 119
G +A P +AA A GG G A D Q ++ +
Sbjct: 161 GGGGGPAAVPEFNNYYGSAAPASGGPGGR-AGPCFDQHGGQQSPGMGMMHSASA------ 213
Query: 120 SGRELPRLRDYFSNP--GNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNR 177
+ P D N G Q PG PG G G GG GG GGG
Sbjct: 214 AAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGA 273
Query: 178 AGS 180
G+
Sbjct: 274 GGA 276
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 41.2 bits (95), Expect = 0.006
Identities = 45/168 (26%), Positives = 59/168 (35%), Gaps = 8/168 (4%)
Query: 7 GGSGSGGGVNPFLSDSDEDDDEVAATEERRAVLRLGAGSGLDPGSAGSLSPQDPVALGSS 66
GGSG GGG + AA A G G G SAG P G
Sbjct: 260 GGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGG 319
Query: 67 ARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYLLTALELHTELLESGRELPR 126
G PG AA+++ G A Q +Q+ A +LL S P
Sbjct: 320 MMMG-PGGGGAASLSKAAAGSAAG--GFQRFAGQ---NQHPSGATPTLNQLLTSPS--PM 371
Query: 127 LRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQ 174
+R Y + + S PP P AA AGG++ + G G+
Sbjct: 372 MRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGK 419
Score = 32.7 bits (73), Expect = 2.2
Identities = 48/183 (26%), Positives = 59/183 (32%), Gaps = 21/183 (11%)
Query: 5 APGGSGSGGGVNPFLSDSDEDDDEVAATEERRAVLRLGAGSGLDPGSAGSLSPQDPVAL- 63
A GG G P LS ++DD E G PG + Q PVA+
Sbjct: 108 AAGGQADPPGP-PLLSKPGDEDDAPPKMGEP------AGGRYEHPGLGALGTQQPPVAVP 160
Query: 64 ----GSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYLLTALELHTELLE 119
G +A P +AA A GG G A D Q ++ +
Sbjct: 161 GGGGGPAAVPEFNNYYGSAAPASGGPGGR-AGPCFDQHGGQQSPGMGMMHSASA------ 213
Query: 120 SGRELPRLRDYFSNP--GNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNR 177
+ P D N G Q PG PG G G GG GG GGG
Sbjct: 214 AAAGAPGSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGA 273
Query: 178 AGS 180
G+
Sbjct: 274 GGA 276
>gi|160420295 hypothetical protein LOC85459 [Homo sapiens]
Length = 2601
Score = 41.2 bits (95), Expect = 0.006
Identities = 50/218 (22%), Positives = 90/218 (41%), Gaps = 29/218 (13%)
Query: 332 ELEALTPIISNLPPTLETPQPAENSMLVQKLEDKISLLNSEKW---SLMEQIRRLKSEM- 387
+L+AL + + + Q + +L+Q+L + ++SE+ S + Q+ SE
Sbjct: 1504 DLQALQQQLDTQKKAIRSIQEVQEELLLQRLSELEKRVSSEQVCSSSFVSQVPVADSERT 1563
Query: 388 ---------DFLKNEHFAIPAVCDSV----QPPLDQLPHKDSEDSGQHPDVNSSDKGK-- 432
D L + H IP + D + +P L Q + ++ Q + S +K +
Sbjct: 1564 QKSFPTKSNDTLPSSHREIPRLQDRLLSLSKPILPQQDNMTAQLDAQREVMYSYEKPQEE 1623
Query: 433 ---NTDIHLSISDEADSTIP-----KENSPNSFPRREREGMPPSS--LSSKKTVHFDKPN 482
N L+ S+ A+ TIP KE + P E P S+ L S + H P+
Sbjct: 1624 LSLNKQRKLNKSESAEHTIPSLFLPKETEHSFIPLPFAEAKPKSTCELYSSQNEHAAPPS 1683
Query: 483 RKLSPAFHQALLSFCRMSADSRLGYEVSRIADSEKSVM 520
+ P F LLSF + + + + D ++ V+
Sbjct: 1684 NPVIPGFQDRLLSFSQSVLTQQDNLGLQKQLDLQREVL 1721
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 39.7 bits (91), Expect = 0.018
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 49 PGSAGSLSPQDPVALGSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYLL 108
PG GS+ PQ ALG PG GE G G+ ++ + ++A Q+ +Q +
Sbjct: 1580 PGITGSMGPQG--ALGPPGVPGAKGER-------GERGDLQSQAMVRSVARQVC-EQLIQ 1629
Query: 109 TALELHTELLES-GRELPRLRDYFSNPGNFERQSGTP--PGM----GAPGVPGAAGVGGA 161
+ + +T +L +R PG R G+P PG G PG PG AGV G
Sbjct: 1630 SHMARYTAILNQIPSHSSSIRTVQGPPGEPGRP-GSPGAPGEQGPPGTPGFPGNAGVPGT 1688
Query: 162 GGREPSTASGGGQLN 176
G T G + N
Sbjct: 1689 PGERGLTGIKGEKGN 1703
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 38.9 bits (89), Expect = 0.030
Identities = 42/123 (34%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
Query: 49 PGSAGSLSPQDPVALGSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYLL 108
P + + SP +ALG A G A A A A G G A LS A LR + L
Sbjct: 210 PWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLP 269
Query: 109 TALELHTELLES-GRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPS 167
L + + G LPR FS G + G G G+ G A GVG A G P
Sbjct: 270 RLLSMPSAAARPCGAALPR--SGFS--GRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQ 325
Query: 168 TAS 170
AS
Sbjct: 326 PAS 328
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 38.9 bits (89), Expect = 0.030
Identities = 42/123 (34%), Positives = 50/123 (40%), Gaps = 5/123 (4%)
Query: 49 PGSAGSLSPQDPVALGSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYLL 108
P + + SP +ALG A G A A A A G G A LS A LR + L
Sbjct: 210 PWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLSGVVQKASYLRPKNLP 269
Query: 109 TALELHTELLES-GRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPS 167
L + + G LPR FS G + G G G+ G A GVG A G P
Sbjct: 270 RLLSMPSAAARPCGAALPR--SGFS--GRPRGRGGAAAGRGSRGEHPACGVGLARGTAPQ 325
Query: 168 TAS 170
AS
Sbjct: 326 PAS 328
>gi|156104908 myosin heavy chain 6 [Homo sapiens]
Length = 1939
Score = 38.9 bits (89), Expect = 0.030
Identities = 44/200 (22%), Positives = 85/200 (42%), Gaps = 14/200 (7%)
Query: 199 ETDEKVAVLEFELRKAKETIQALRANLTKAAEHEVPLQERKN--YKSSPEIQEPIKPLEK 256
ET++++A ++ E + KET++ A + E V L + KN Q+ + E+
Sbjct: 846 ETEKEMATMKEEFGRIKETLEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLNDAEE 905
Query: 257 RALNFLVNEFLLKNNYKLTSITFSDENDDQDFELWDDVGLNIPKPPDLLQLYRDFGNHQV 316
R + N+ L+ K + DE ++ + EL + +L +D + ++
Sbjct: 906 RCDQLIKNKIQLEAKVKEMNERLEDE-EEMNAEL---TAKKRKLEDECSELKKDIDDLEL 961
Query: 317 TGKDLVDVASGVEE------DELEALTPIISNLPPTLETPQPAENSML--VQKLEDKISL 368
T + E +E+ L II+ L + Q A L +Q EDK++
Sbjct: 962 TLAKVEKEKHATENKVKNLTEEMAGLDEIIAKLTKEKKALQEAHQQALDDLQVEEDKVNS 1021
Query: 369 LNSEKWSLMEQIRRLKSEMD 388
L+ K L +Q+ L+ ++
Sbjct: 1022 LSKSKVKLEQQVDDLEGSLE 1041
>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
sapiens]
Length = 603
Score = 37.4 bits (85), Expect = 0.088
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 16/120 (13%)
Query: 150 PGVPGAAGVGG-AGGREPSTASGGGQLNRAGSISTLDSLDFARYSDDGNRETDEKVAVL- 207
PGVP AA A G P TA+ GG + S S SL AR S E+ AVL
Sbjct: 26 PGVPAAAKRNTKANGSSPETAASGGCHSSEASSSASSSL-HARQS-----PCQEQAAVLN 79
Query: 208 --EFELRKAKETIQALRANLTKAAEHEVPLQERKN---YKSSPEIQEPIKPL--EKRALN 260
++ + +TI++L+ K EH++ +++ N K+ E++ I+ L EK+ LN
Sbjct: 80 SRSIKISRLNDTIKSLKQQ-KKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLN 138
>gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo
sapiens]
Length = 603
Score = 37.4 bits (85), Expect = 0.088
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 16/120 (13%)
Query: 150 PGVPGAAGVGG-AGGREPSTASGGGQLNRAGSISTLDSLDFARYSDDGNRETDEKVAVL- 207
PGVP AA A G P TA+ GG + S S SL AR S E+ AVL
Sbjct: 26 PGVPAAAKRNTKANGSSPETAASGGCHSSEASSSASSSL-HARQS-----PCQEQAAVLN 79
Query: 208 --EFELRKAKETIQALRANLTKAAEHEVPLQERKN---YKSSPEIQEPIKPL--EKRALN 260
++ + +TI++L+ K EH++ +++ N K+ E++ I+ L EK+ LN
Sbjct: 80 SRSIKISRLNDTIKSLKQQ-KKQVEHQLEEEKKANNEKQKAERELEGQIQRLNTEKKKLN 138
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 37.4 bits (85), Expect = 0.088
Identities = 35/129 (27%), Positives = 47/129 (36%), Gaps = 9/129 (6%)
Query: 48 DPGSAGSLSPQDPVALGSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYL 107
DPG G P P G+ PG PG GG G +S AQ + Q
Sbjct: 479 DPGDRGP--PGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQAR 536
Query: 108 LTALELHTELLESGRELPRLRDYFSNPGNF--ERQSGTPPGMGAPGVPGAAGVGGAGGRE 165
+ + +GR P PG+ + +SG P G GV G G G G+
Sbjct: 537 IALRGPPGPMGLTGRPGP-----VGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKR 591
Query: 166 PSTASGGGQ 174
+ GG+
Sbjct: 592 GRPGADGGR 600
Score = 30.8 bits (68), Expect = 8.2
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 140 QSGTPPGMGAPGVPGAAGVGGAGGREPSTASGG 172
+ G P G PG PG AGVGG G G
Sbjct: 1265 EKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAG 1297
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 37.4 bits (85), Expect = 0.088
Identities = 35/129 (27%), Positives = 47/129 (36%), Gaps = 9/129 (6%)
Query: 48 DPGSAGSLSPQDPVALGSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYL 107
DPG G P P G+ PG PG GG G +S AQ + Q
Sbjct: 428 DPGDRGP--PGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQAR 485
Query: 108 LTALELHTELLESGRELPRLRDYFSNPGNF--ERQSGTPPGMGAPGVPGAAGVGGAGGRE 165
+ + +GR P PG+ + +SG P G GV G G G G+
Sbjct: 486 IALRGPPGPMGLTGRPGP-----VGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKR 540
Query: 166 PSTASGGGQ 174
+ GG+
Sbjct: 541 GRPGADGGR 549
Score = 30.8 bits (68), Expect = 8.2
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 140 QSGTPPGMGAPGVPGAAGVGGAGGREPSTASGG 172
+ G P G PG PG AGVGG G G
Sbjct: 1214 EKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAG 1246
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 37.4 bits (85), Expect = 0.088
Identities = 35/129 (27%), Positives = 47/129 (36%), Gaps = 9/129 (6%)
Query: 48 DPGSAGSLSPQDPVALGSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYL 107
DPG G P P G+ PG PG GG G +S AQ + Q
Sbjct: 467 DPGDRGP--PGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQAR 524
Query: 108 LTALELHTELLESGRELPRLRDYFSNPGNF--ERQSGTPPGMGAPGVPGAAGVGGAGGRE 165
+ + +GR P PG+ + +SG P G GV G G G G+
Sbjct: 525 IALRGPPGPMGLTGRPGP-----VGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKR 579
Query: 166 PSTASGGGQ 174
+ GG+
Sbjct: 580 GRPGADGGR 588
Score = 30.8 bits (68), Expect = 8.2
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 140 QSGTPPGMGAPGVPGAAGVGGAGGREPSTASGG 172
+ G P G PG PG AGVGG G G
Sbjct: 1253 EKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAG 1285
>gi|89886480 zinedin isoform 2 [Homo sapiens]
Length = 760
Score = 37.4 bits (85), Expect = 0.088
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 144 PPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNRAGSISTLDSLDFARYSDDGNR----- 198
P APG PG AG GG GG P +G L+ G + + ++AR+ + R
Sbjct: 33 PVSAPAPG-PGPAGKGGGGGGSPGPTAGPEPLSLPGILHFIQH-EWARFEAEKARWEAER 90
Query: 199 -ETDEKVAVLEFELRKAKETIQALRANLTKAAEHEVPLQERKNY 241
E +VA L+ E RK +E ++ K E+ + QER Y
Sbjct: 91 AELQAQVAFLQGE-RKGQENLKTDLVRRIKMLEYALK-QERAKY 132
>gi|89886477 zinedin isoform 1 [Homo sapiens]
Length = 753
Score = 37.4 bits (85), Expect = 0.088
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 144 PPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNRAGSISTLDSLDFARYSDDGNR----- 198
P APG PG AG GG GG P +G L+ G + + ++AR+ + R
Sbjct: 33 PVSAPAPG-PGPAGKGGGGGGSPGPTAGPEPLSLPGILHFIQH-EWARFEAEKARWEAER 90
Query: 199 -ETDEKVAVLEFELRKAKETIQALRANLTKAAEHEVPLQERKNY 241
E +VA L+ E RK +E ++ K E+ + QER Y
Sbjct: 91 AELQAQVAFLQGE-RKGQENLKTDLVRRIKMLEYALK-QERAKY 132
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 37.0 bits (84), Expect = 0.11
Identities = 50/191 (26%), Positives = 72/191 (37%), Gaps = 25/191 (13%)
Query: 6 PGGSGSGGGVNPFLSDSDEDDDEVAATEER----RAVLRLGAGSGLDPGS-AGSLSPQDP 60
P +G G G L S+ +++E A R RL G P + AG+L+ +P
Sbjct: 71 PDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEP 130
Query: 61 VALGSS----ARPGLPGEASAAAVALGGTGETPARL-------SIDAIAAQLLRDQYLLT 109
G + PG PG L P R + A+ + +YL
Sbjct: 131 CEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSV 190
Query: 110 ALELHTELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTA 169
L+ L S E +++ +F N ++ PG GAA VGG G +P A
Sbjct: 191 CERLNLALSLSLTET-QVKIWFQNRRTKWKKQN-------PGADGAAQVGG-GAPQPGAA 241
Query: 170 SGGGQLNRAGS 180
GGG GS
Sbjct: 242 GGGGGGGSGGS 252
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 37.0 bits (84), Expect = 0.11
Identities = 40/128 (31%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 49 PGSAGSLSPQDPV-ALGSSARPGLPGEASAAAV--ALGGTGET-PARLSIDAIAAQLLRD 104
PG +G+ P P+ + G S PG G V A+G G + P+ L + AA +
Sbjct: 594 PGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGG 653
Query: 105 QYLLTALELHTELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAG-VGGAGG 163
+ E G P LR NPG + G P +GAPG GA G G AG
Sbjct: 654 KG------------EKGE--PGLRGEIGNPGR-DGARGAPGAVGAPGPAGATGDRGEAGA 698
Query: 164 REPSTASG 171
P+ +G
Sbjct: 699 AGPAGPAG 706
Score = 36.6 bits (83), Expect = 0.15
Identities = 44/145 (30%), Positives = 57/145 (39%), Gaps = 29/145 (20%)
Query: 43 AGSGLDPGSAGSLSPQDPVALGSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLL 102
AG+ GS G + P P+ GS+ PG PG A G GE A +
Sbjct: 231 AGARGSDGSVGPVGPAGPI--GSAGPPGFPG-------APGPKGEIGAVGNAGPAGPAGP 281
Query: 103 RDQYLLTALELHTELLESGRELPRLRDYFSNPG-----NFERQSGTPPGMGAPGVPGAAG 157
R + L L SG P NPG + +G P GAPG+PG G
Sbjct: 282 RGEVGLPGL--------SGPVGPP-----GNPGANGLTGAKGAAGLPGVAGAPGLPGPRG 328
Query: 158 VGGAGGREPSTASGG--GQLNRAGS 180
+ G G +T + G G+ AGS
Sbjct: 329 IPGPVGAAGATGARGLVGEPGPAGS 353
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 37.0 bits (84), Expect = 0.11
Identities = 48/178 (26%), Positives = 63/178 (35%), Gaps = 32/178 (17%)
Query: 5 APGGSGSGGGVNPFLSDSDEDDDEVAATEERRAVLRLGAGSGLDPGSAGSLSPQDPVALG 64
AP S + GV S + + AA ++A RL G G Q G
Sbjct: 39 APALSAAAAGVKILGSGDKKLRRQKAAAGGKKA--RLRGQKGAVAGKEARQHWQKAAGAG 96
Query: 65 SSARPGLPGEASAAAV---ALGGTGETPARLSIDAIAAQLLRDQYLLTALELHTELLESG 121
+ G GE AAA +LGG G P R A A +G
Sbjct: 97 GAENRG-GGEQKAAAAGTKSLGGRGRKPRRRGQKAAA---------------------TG 134
Query: 122 RELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNRAG 179
+ PR R S + + G GA AAGV GG +P A+ G +R+G
Sbjct: 135 SKKPRWRAQKSAAAGSKNR-----GAGAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSG 187
>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform b [Homo sapiens]
Length = 373
Score = 37.0 bits (84), Expect = 0.11
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 76 SAAAVALGGTGET--PARLSIDAIAAQLLRDQYLLTALELHTELLESGRELPRLRDYFSN 133
+ A +LGG+GE PA + A+ A +SG +
Sbjct: 144 AGAGASLGGSGEEMGPAAAVVSAVIA---------------AAAAQSGAGPHYHHHHHHA 188
Query: 134 PGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGG 173
G+ + PG A G GGAGG P++A GGG
Sbjct: 189 AGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGG 228
>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform a [Homo sapiens]
Length = 403
Score = 37.0 bits (84), Expect = 0.11
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 76 SAAAVALGGTGET--PARLSIDAIAAQLLRDQYLLTALELHTELLESGRELPRLRDYFSN 133
+ A +LGG+GE PA + A+ A +SG +
Sbjct: 144 AGAGASLGGSGEEMGPAAAVVSAVIA---------------AAAAQSGAGPHYHHHHHHA 188
Query: 134 PGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGG 173
G+ + PG A G GGAGG P++A GGG
Sbjct: 189 AGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGG 228
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 37.0 bits (84), Expect = 0.11
Identities = 48/177 (27%), Positives = 62/177 (35%), Gaps = 26/177 (14%)
Query: 22 SDEDDDEVAATEERRAVLRLGAGSGLDPGSAGSLSPQDPVALGSSARPGLPGEASAAAVA 81
S D + R ++L GAG+G GS + +++G R G P A
Sbjct: 126 SSSASDASKPSSPRGSLLLDGAGAGGAGGSRPCSNRTSGISMGYDQRHGSPLPAGPCLFG 185
Query: 82 LGGTGETPARLSIDAIAAQLLRDQYLLTALELHTELLESGRELPRLRDYFSNPGNF---E 138
G PA S + + ELH L R Y P F E
Sbjct: 186 PPLAG-APAGYSPGGVPSAYP---------ELHAALD---------RLYAQRPAGFGCQE 226
Query: 139 RQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNRAGSISTLDSLDFARYSDD 195
+ PP +G+PG AGVG AG E G Q R D ARY D+
Sbjct: 227 SRHSYPPALGSPGALAGAGVGAAGPLE----RRGAQPGRHSVTGYGDCAVGARYQDE 279
>gi|210031154 zinc finger protein 541 [Homo sapiens]
Length = 1365
Score = 36.6 bits (83), Expect = 0.15
Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 13/129 (10%)
Query: 57 PQDPVALGSSAR-----PGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYLLTAL 111
P +P A GS AR PG+P EAS + G +AA L D +
Sbjct: 615 PGNPEAEGSPARRRKTTPGVPREASPGSTRRDAKGGLKVAAVPTPLAAPSL-DPSRNPDI 673
Query: 112 ELHTELLESGRELPRLRDYFSNPGNFERQSG-------TPPGMGAPGVPGAAGVGGAGGR 164
+ L S + L D F + G + Q G + PG AP GAA G +
Sbjct: 674 SSLAKQLRSSKGTLDLEDIFPSTGQRQTQLGGEEPPGASLPGKQAPAENGAASRITKGEK 733
Query: 165 EPSTASGGG 173
P+ + GGG
Sbjct: 734 GPACSRGGG 742
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 36.2 bits (82), Expect = 0.20
Identities = 38/125 (30%), Positives = 46/125 (36%), Gaps = 18/125 (14%)
Query: 49 PGSAGSLSPQ-DPVALGSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYL 107
PGS G PQ D G+ RPGLPGE A G P +D + +
Sbjct: 654 PGSPGFPGPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLPGDMGPPG-- 711
Query: 108 LTALELHTELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPS 167
GR P NPG + Q G PG+G PG+ G G+ G G
Sbjct: 712 -----------TPGR--PGFNGLPGNPG-VQGQKG-EPGVGLPGLKGLPGLPGIPGTPGE 756
Query: 168 TASGG 172
S G
Sbjct: 757 KGSIG 761
Score = 31.6 bits (70), Expect = 4.8
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 140 QSGTPPGMGAPGVPGAAG----VGGAGGR-EPSTASGGGQLNRAGSISTLDSLD 188
Q G+P +GAPG+PG G G +G R +P G + G ++D +D
Sbjct: 889 QPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVD 942
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 36.2 bits (82), Expect = 0.20
Identities = 46/185 (24%), Positives = 70/185 (37%), Gaps = 21/185 (11%)
Query: 8 GSGSGGGVNPFLSDSDEDDDEVAATEERRAVLRLGAGSGLDPGS-AGSLSPQDPVALGSS 66
G+G + ++ +ED ++ R RL G P + AG+L+ +P G
Sbjct: 99 GAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGG 158
Query: 67 ----ARPGLPGEASAAAVALGGTGETPARL-------SIDAIAAQLLRDQYLLTALELHT 115
+ PG PG L P R + A+ + +YL L+
Sbjct: 159 GPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNL 218
Query: 116 ELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQL 175
L S E +++ +F N ++ PG GAA VGG G +P A GGG
Sbjct: 219 ALSLSLTET-QVKIWFQNRRTKWKKQN-------PGADGAAQVGG-GAPQPGAAGGGGGG 269
Query: 176 NRAGS 180
GS
Sbjct: 270 GSGGS 274
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 36.2 bits (82), Expect = 0.20
Identities = 46/185 (24%), Positives = 70/185 (37%), Gaps = 21/185 (11%)
Query: 8 GSGSGGGVNPFLSDSDEDDDEVAATEERRAVLRLGAGSGLDPGS-AGSLSPQDPVALGSS 66
G+G + ++ +ED ++ R RL G P + AG+L+ +P G
Sbjct: 99 GAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGG 158
Query: 67 ----ARPGLPGEASAAAVALGGTGETPARL-------SIDAIAAQLLRDQYLLTALELHT 115
+ PG PG L P R + A+ + +YL L+
Sbjct: 159 GPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNL 218
Query: 116 ELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQL 175
L S E +++ +F N ++ PG GAA VGG G +P A GGG
Sbjct: 219 ALSLSLTET-QVKIWFQNRRTKWKKQN-------PGADGAAQVGG-GAPQPGAAGGGGGG 269
Query: 176 NRAGS 180
GS
Sbjct: 270 GSGGS 274
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 36.2 bits (82), Expect = 0.20
Identities = 46/185 (24%), Positives = 70/185 (37%), Gaps = 21/185 (11%)
Query: 8 GSGSGGGVNPFLSDSDEDDDEVAATEERRAVLRLGAGSGLDPGS-AGSLSPQDPVALGSS 66
G+G + ++ +ED ++ R RL G P + AG+L+ +P G
Sbjct: 99 GAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGG 158
Query: 67 ----ARPGLPGEASAAAVALGGTGETPARL-------SIDAIAAQLLRDQYLLTALELHT 115
+ PG PG L P R + A+ + +YL L+
Sbjct: 159 GPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLNL 218
Query: 116 ELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQL 175
L S E +++ +F N ++ PG GAA VGG G +P A GGG
Sbjct: 219 ALSLSLTET-QVKIWFQNRRTKWKKQN-------PGADGAAQVGG-GAPQPGAAGGGGGG 269
Query: 176 NRAGS 180
GS
Sbjct: 270 GSGGS 274
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,905,645
Number of Sequences: 37866
Number of extensions: 2323907
Number of successful extensions: 17632
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 200
Number of HSP's that attempted gapping in prelim test: 13698
Number of HSP's gapped (non-prelim): 3998
length of query: 1216
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1102
effective length of database: 13,930,794
effective search space: 15351734988
effective search space used: 15351734988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.