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Search of human proteins with 149944593
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|149944593 hypothetical protein LOC23349 [Homo sapiens]
(400 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|149944593 hypothetical protein LOC23349 [Homo sapiens] 813 0.0
gi|122939208 nuclear antigen Sp100 isoform 1 [Homo sapiens] 35 0.092
gi|51173735 ras responsive element binding protein 1 isoform 2 [... 35 0.092
gi|51173737 ras responsive element binding protein 1 isoform 1 [... 35 0.092
gi|134133279 SP140 nuclear body protein-like [Homo sapiens] 34 0.27
gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens] 33 0.46
gi|22212927 nuclear transcription factor, X-box binding 1 isofor... 33 0.60
gi|22212925 nuclear transcription factor, X-box binding 1 isofor... 33 0.60
gi|21361137 nuclear transcription factor, X-box binding 1 isofor... 33 0.60
gi|109826351 melanophilin isoform 2 [Homo sapiens] 33 0.60
gi|13129108 melanophilin isoform 1 [Homo sapiens] 33 0.60
gi|157168349 F-box and leucine-rich repeat protein 19 [Homo sapi... 32 0.78
gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo ... 32 0.78
gi|51479145 brefeldin A-inhibited guanine nucleotide-exchange pr... 32 1.3
gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo ... 32 1.3
gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo ... 32 1.3
gi|4557291 autoimmune regulator isoform 1 [Homo sapiens] 31 1.7
gi|88999586 cell division cycle associated 7 isoform 1 [Homo sap... 31 2.3
gi|22027514 cell division cycle associated 7 isoform 2 [Homo sap... 31 2.3
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 30 3.0
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 30 3.0
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 30 3.0
gi|31543392 peroxisome proliferator-activated receptor gamma, co... 30 3.0
gi|148727368 bromodomain and PHD finger containing, 3 [Homo sapi... 30 3.0
gi|24371268 nucleosome assembly protein 1-like 5 [Homo sapiens] 30 3.0
gi|13128998 sodium channel modifier 1 [Homo sapiens] 30 3.0
gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens] 30 3.9
gi|21071001 autocrine motility factor receptor [Homo sapiens] 30 3.9
gi|210032790 hypothetical protein LOC27146 [Homo sapiens] 30 5.0
gi|20149643 zinc finger, HIT type 6 [Homo sapiens] 30 5.0
>gi|149944593 hypothetical protein LOC23349 [Homo sapiens]
Length = 400
Score = 813 bits (2099), Expect = 0.0
Identities = 400/400 (100%), Positives = 400/400 (100%)
Query: 1 MGVLMSKRQTVEQVQKVSLAVSAFKDGLRDRPSIRRTGELPGSRRGTVEGSVQEVQEEKE 60
MGVLMSKRQTVEQVQKVSLAVSAFKDGLRDRPSIRRTGELPGSRRGTVEGSVQEVQEEKE
Sbjct: 1 MGVLMSKRQTVEQVQKVSLAVSAFKDGLRDRPSIRRTGELPGSRRGTVEGSVQEVQEEKE 60
Query: 61 AEAGTSVVQEESSAGRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRPTRKLDDDKPPEIC 120
AEAGTSVVQEESSAGRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRPTRKLDDDKPPEIC
Sbjct: 61 AEAGTSVVQEESSAGRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRPTRKLDDDKPPEIC 120
Query: 121 LEPREPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTE 180
LEPREPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTE
Sbjct: 121 LEPREPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTE 180
Query: 181 TGWSCHYCDNINLLLTEEEMYSLTETFQRCKVIPDCSLTLEDFLRYRHQAAKRGDRDRAL 240
TGWSCHYCDNINLLLTEEEMYSLTETFQRCKVIPDCSLTLEDFLRYRHQAAKRGDRDRAL
Sbjct: 181 TGWSCHYCDNINLLLTEEEMYSLTETFQRCKVIPDCSLTLEDFLRYRHQAAKRGDRDRAL 240
Query: 241 SEEQEEQAARQFAALDPEHRGHIEWPDFLSHESLLLLQQLRPQNSLLRLLTVKERERARA 300
SEEQEEQAARQFAALDPEHRGHIEWPDFLSHESLLLLQQLRPQNSLLRLLTVKERERARA
Sbjct: 241 SEEQEEQAARQFAALDPEHRGHIEWPDFLSHESLLLLQQLRPQNSLLRLLTVKERERARA 300
Query: 301 AFLARGSGSTVSEAECRRAQHSWFCKRFPEAPSCSVSISHVGPIADSSPASSSSKSQDKT 360
AFLARGSGSTVSEAECRRAQHSWFCKRFPEAPSCSVSISHVGPIADSSPASSSSKSQDKT
Sbjct: 301 AFLARGSGSTVSEAECRRAQHSWFCKRFPEAPSCSVSISHVGPIADSSPASSSSKSQDKT 360
Query: 361 LLPTEQESRFVDWPTFLQENVLYILAARPNSAAIHLKPPG 400
LLPTEQESRFVDWPTFLQENVLYILAARPNSAAIHLKPPG
Sbjct: 361 LLPTEQESRFVDWPTFLQENVLYILAARPNSAAIHLKPPG 400
>gi|122939208 nuclear antigen Sp100 isoform 1 [Homo sapiens]
Length = 885
Score = 35.4 bits (80), Expect = 0.092
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 15/60 (25%)
Query: 129 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC 188
N +C+VC W LF C C R FH+ C + + + WSC +C
Sbjct: 701 NSNICEVCNKWGR--LFCCDTCPRSFHEHC-------------HIPSVEANKNPWSCIFC 745
>gi|51173735 ras responsive element binding protein 1 isoform 2 [Homo
sapiens]
Length = 1687
Score = 35.4 bits (80), Expect = 0.092
Identities = 34/116 (29%), Positives = 42/116 (36%), Gaps = 24/116 (20%)
Query: 56 QEEKEAEAGTSVVQEESSAGRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRPTRKLDDDK 115
QEEK E VV+ AG A E+L EE + S A R + K DDDK
Sbjct: 1441 QEEKPPETPAEVVESAPGAGEAPAEKL-------AEETEGPSDGESAAEKRSSEKSDDDK 1493
Query: 116 PPEICLEPREPVVNDEMCDVCEV-----W------------TAESLFPCRVCTRVF 154
P+ D+ VC V W T E + C+ C R F
Sbjct: 1494 KPKTDSPKSVASKADKRKKVCSVCNKRFWSLQDLTRHMRSHTGERPYKCQTCERTF 1549
>gi|51173737 ras responsive element binding protein 1 isoform 1 [Homo
sapiens]
Length = 1742
Score = 35.4 bits (80), Expect = 0.092
Identities = 34/116 (29%), Positives = 42/116 (36%), Gaps = 24/116 (20%)
Query: 56 QEEKEAEAGTSVVQEESSAGRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRPTRKLDDDK 115
QEEK E VV+ AG A E+L EE + S A R + K DDDK
Sbjct: 1496 QEEKPPETPAEVVESAPGAGEAPAEKL-------AEETEGPSDGESAAEKRSSEKSDDDK 1548
Query: 116 PPEICLEPREPVVNDEMCDVCEV-----W------------TAESLFPCRVCTRVF 154
P+ D+ VC V W T E + C+ C R F
Sbjct: 1549 KPKTDSPKSVASKADKRKKVCSVCNKRFWSLQDLTRHMRSHTGERPYKCQTCERTF 1604
>gi|134133279 SP140 nuclear body protein-like [Homo sapiens]
Length = 580
Score = 33.9 bits (76), Expect = 0.27
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 129 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC 188
N + C+VC LF C C+RVFH+ C + + +T W+C +C
Sbjct: 402 NLDECEVCR--DGGELFCCDTCSRVFHEDC-------------HIPPVESEKTPWNCIFC 446
>gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens]
Length = 867
Score = 33.1 bits (74), Expect = 0.46
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 15/60 (25%)
Query: 129 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC 188
N + C+VC LF C C+RVFH+ C + + T W+C +C
Sbjct: 689 NLDECEVCR--DGGELFCCDTCSRVFHEDC-------------HIPPVEAERTPWNCIFC 733
>gi|22212927 nuclear transcription factor, X-box binding 1 isoform 3
[Homo sapiens]
Length = 833
Score = 32.7 bits (73), Expect = 0.60
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 133 CDVC--EVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 190
C VC V ++ C+ C VFH C+++ A A ++GW C C N
Sbjct: 358 CMVCCELVRVTAPVWSCQSCYHVFHLNCIKKW-------ARSPASQADGQSGWRCPACQN 410
Query: 191 IN 192
++
Sbjct: 411 VS 412
>gi|22212925 nuclear transcription factor, X-box binding 1 isoform 2
[Homo sapiens]
Length = 1024
Score = 32.7 bits (73), Expect = 0.60
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 133 CDVC--EVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 190
C VC V ++ C+ C VFH C+++ A A ++GW C C N
Sbjct: 358 CMVCCELVRVTAPVWSCQSCYHVFHLNCIKKW-------ARSPASQADGQSGWRCPACQN 410
Query: 191 IN 192
++
Sbjct: 411 VS 412
>gi|21361137 nuclear transcription factor, X-box binding 1 isoform 1
[Homo sapiens]
Length = 1120
Score = 32.7 bits (73), Expect = 0.60
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 133 CDVC--EVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 190
C VC V ++ C+ C VFH C+++ A A ++GW C C N
Sbjct: 358 CMVCCELVRVTAPVWSCQSCYHVFHLNCIKKW-------ARSPASQADGQSGWRCPACQN 410
Query: 191 IN 192
++
Sbjct: 411 VS 412
>gi|109826351 melanophilin isoform 2 [Homo sapiens]
Length = 572
Score = 32.7 bits (73), Expect = 0.60
Identities = 66/323 (20%), Positives = 106/323 (32%), Gaps = 75/323 (23%)
Query: 58 EKEAEAGTSVVQEESSAGRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRPTRKLDDDKPP 117
++EA+ VVQ + R ERL +G +E + + A + T
Sbjct: 12 DEEAQHVLEVVQRDFDLRRKEEERLEALKGKIKKESSKRELLSDTAHLNETHCAR----- 66
Query: 118 EICLEPREPVVNDE-MCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEM 176
CL+P + +VN + C C LF C+ C RV +
Sbjct: 67 --CLQPYQLLVNSKRQCLEC------GLFTCKSCGRVHPE-------------------- 98
Query: 177 AHTETGWSCHYCDNINLLLTEEEMYSLTETFQRCKVIPDCSLTLEDFLRYRHQAAKRGDR 236
E GW C C ++ + R K + +R H + G
Sbjct: 99 ---EQGWICDPCHLARVVKIGSLEWYYEHVKARFKRFGSAKV-----IRSLHGRLQGGAG 150
Query: 237 DRALSEEQEEQAARQFAALDPEHRGHIEWPDFLSHESLLLL-----------QQLRPQNS 285
+SEE+ + + +P + F S + LL +PQ
Sbjct: 151 PELISEERSGDSDQTDEDGEPGSEAQAQAQPFGSKKKRLLSVHDFDFEGDSDDSTQPQGH 210
Query: 286 LLRLLTVKERERARAAFLARGSGSTVSEAEC--RRAQH-----------SWFCKRFPEAP 332
L L +V E AR S ++++ C + A H + C PE
Sbjct: 211 SLHLSSVPE---------ARDSPQSLTDESCSEKAAPHKAEGLEEADTGASGCHSHPEEQ 261
Query: 333 SCSVSISHVGPIADSSPASSSSK 355
S+S S G +A+ P S +
Sbjct: 262 PTSISPSRHGALAELCPPGGSHR 284
>gi|13129108 melanophilin isoform 1 [Homo sapiens]
Length = 600
Score = 32.7 bits (73), Expect = 0.60
Identities = 66/323 (20%), Positives = 106/323 (32%), Gaps = 75/323 (23%)
Query: 58 EKEAEAGTSVVQEESSAGRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRPTRKLDDDKPP 117
++EA+ VVQ + R ERL +G +E + + A + T
Sbjct: 12 DEEAQHVLEVVQRDFDLRRKEEERLEALKGKIKKESSKRELLSDTAHLNETHCAR----- 66
Query: 118 EICLEPREPVVNDE-MCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEM 176
CL+P + +VN + C C LF C+ C RV +
Sbjct: 67 --CLQPYQLLVNSKRQCLEC------GLFTCKSCGRVHPE-------------------- 98
Query: 177 AHTETGWSCHYCDNINLLLTEEEMYSLTETFQRCKVIPDCSLTLEDFLRYRHQAAKRGDR 236
E GW C C ++ + R K + +R H + G
Sbjct: 99 ---EQGWICDPCHLARVVKIGSLEWYYEHVKARFKRFGSAKV-----IRSLHGRLQGGAG 150
Query: 237 DRALSEEQEEQAARQFAALDPEHRGHIEWPDFLSHESLLLL-----------QQLRPQNS 285
+SEE+ + + +P + F S + LL +PQ
Sbjct: 151 PELISEERSGDSDQTDEDGEPGSEAQAQAQPFGSKKKRLLSVHDFDFEGDSDDSTQPQGH 210
Query: 286 LLRLLTVKERERARAAFLARGSGSTVSEAEC--RRAQH-----------SWFCKRFPEAP 332
L L +V E AR S ++++ C + A H + C PE
Sbjct: 211 SLHLSSVPE---------ARDSPQSLTDESCSEKAAPHKAEGLEEADTGASGCHSHPEEQ 261
Query: 333 SCSVSISHVGPIADSSPASSSSK 355
S+S S G +A+ P S +
Sbjct: 262 PTSISPSRHGALAELCPPGGSHR 284
>gi|157168349 F-box and leucine-rich repeat protein 19 [Homo
sapiens]
Length = 694
Score = 32.3 bits (72), Expect = 0.78
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 143 SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC 188
SL C +C + H GCL +MG +G AE+ W C C
Sbjct: 110 SLMECTICNEIVHPGCL-KMGKAEGVINAEIPNC------WECPRC 148
>gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo
sapiens]
Length = 1135
Score = 32.3 bits (72), Expect = 0.78
Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 39/151 (25%)
Query: 53 QEVQEEKEAEAGTSVV---QEESSAGRAAWERL-----RDGRGVEPEEFDRT--SRFTPP 102
+E++ E+E G + ++ SA R A +R G P++ + + P
Sbjct: 9 EEIKTEQEVVEGMDISTRSKDPGSAERTAQKRKFPSPPHSSNGHSPQDTSTSPIKKKKKP 68
Query: 103 AFIRPTRKLDDDKPPEICLEPREPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 162
+ K D + ND C VC + C +C RV+H CLR
Sbjct: 69 GLLNSNNKEQDGR-------------NDFYCWVCH--REGQVLCCELCPRVYHAKCLRLT 113
Query: 163 GYIQGDSAAEVTEMAHTETGWSCHYCDNINL 193
+GD W C C+ I +
Sbjct: 114 SEPEGD--------------WFCPECEKITV 130
>gi|51479145 brefeldin A-inhibited guanine nucleotide-exchange
protein 1 [Homo sapiens]
Length = 1849
Score = 31.6 bits (70), Expect = 1.3
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 294 ERERARAAFLARGSGSTVSEAECRRAQHSWFCKRFPEAPSCSVSISHVGPIADS-SPASS 352
E ++ + FL R +++ E ++A HS K +C V++ + + SP
Sbjct: 3 EGKKTKNMFLTRALEKILADKEVKKAHHSQLRK------ACEVALEEIKAETEKQSPPHG 56
Query: 353 SSKSQDKTLLPTEQESRFVD 372
+K+ TL P + ++ F++
Sbjct: 57 EAKAGSSTLPPVKSKTNFIE 76
>gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo
sapiens]
Length = 1188
Score = 31.6 bits (70), Expect = 1.3
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 16/65 (24%)
Query: 129 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC 188
ND C VC + C +C RV+H CLR +GD W C C
Sbjct: 107 NDFYCWVCH--REGQVLCCELCPRVYHAKCLRLTSEPEGD--------------WFCPEC 150
Query: 189 DNINL 193
+ I +
Sbjct: 151 EKITV 155
>gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo
sapiens]
Length = 1160
Score = 31.6 bits (70), Expect = 1.3
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 16/65 (24%)
Query: 129 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC 188
ND C VC + C +C RV+H CLR +GD W C C
Sbjct: 107 NDFYCWVCH--REGQVLCCELCPRVYHAKCLRLTSEPEGD--------------WFCPEC 150
Query: 189 DNINL 193
+ I +
Sbjct: 151 EKITV 155
>gi|4557291 autoimmune regulator isoform 1 [Homo sapiens]
Length = 545
Score = 31.2 bits (69), Expect = 1.7
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 23/137 (16%)
Query: 37 TGELPGSRRGTVEGSVQEVQEEKEAEAGTSVVQ-----------EESSAGRAAWERLRDG 85
+G++PG+R G VEG + +Q+ E+ +Q E+S +G+ + R
Sbjct: 196 SGDVPGAR-GAVEGIL--IQQVFESGGSKKCIQVGGEFYTPSKFEDSGSGK---NKARSS 249
Query: 86 RGVEPEEFDRTSRFTPPAFIRPTRKLDDDKPPEICLEPREPVV---NDEMCDVCEVWTAE 142
G +P + ++ P P + L P +P + N++ C VC
Sbjct: 250 SGPKPLVRAKGAQGAAPGGGEARLGQQGSVPAPLAL-PSDPQLHQKNEDECAVCR--DGG 306
Query: 143 SLFPCRVCTRVFHDGCL 159
L C C R FH CL
Sbjct: 307 ELICCDGCPRAFHLACL 323
>gi|88999586 cell division cycle associated 7 isoform 1 [Homo
sapiens]
Length = 450
Score = 30.8 bits (68), Expect = 2.3
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 15/103 (14%)
Query: 97 SRFTPPAFIRPTRKLDDDKPPEICLEPREPVVNDEM---CDVCEVWTAESLFPCR--VCT 151
S T P IRP ++ +++ +C RE + N + C C T ++ CR C
Sbjct: 310 SSVTLPHIIRPVEEITEEELENVCSNSREKIYNRSLGSTCHQCRQKTIDTKTNCRNPDCW 369
Query: 152 RV---FHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 191
V F CLR + E A + W C C I
Sbjct: 370 GVRGQFCGPCLR-------NRYGEEVRDALLDPNWHCPPCRGI 405
>gi|22027514 cell division cycle associated 7 isoform 2 [Homo
sapiens]
Length = 371
Score = 30.8 bits (68), Expect = 2.3
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 15/103 (14%)
Query: 97 SRFTPPAFIRPTRKLDDDKPPEICLEPREPVVNDEM---CDVCEVWTAESLFPCR--VCT 151
S T P IRP ++ +++ +C RE + N + C C T ++ CR C
Sbjct: 231 SSVTLPHIIRPVEEITEEELENVCSNSREKIYNRSLGSTCHQCRQKTIDTKTNCRNPDCW 290
Query: 152 RV---FHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 191
V F CLR + E A + W C C I
Sbjct: 291 GVRGQFCGPCLR-------NRYGEEVRDALLDPNWHCPPCRGI 326
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 30.4 bits (67), Expect = 3.0
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 51 SVQEVQEEKEA---EAGTSVVQEESSAGRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRP 107
S +E + E EA + G+ +E+SSA ER D +G E+ + PP
Sbjct: 223 SSEEEESEDEAVHCDEGSEAEEEDSSATPVLQER--DSKGAGQEQGMPAGKKRPPEARAE 280
Query: 108 TRKLDDDKPPEICLEPREPVVNDEMCDVCEVWTAESLFPCR-VCTRVFHDGCLRRMGYIQ 166
T K + K P C + + +V E E L P + V R+ + + GYI
Sbjct: 281 TEKPANQKEPTTCHTVK---LRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIF 337
Query: 167 GDSAAE 172
D + E
Sbjct: 338 VDFSNE 343
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 30.4 bits (67), Expect = 3.0
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 51 SVQEVQEEKEA---EAGTSVVQEESSAGRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRP 107
S +E + E EA + G+ +E+SSA ER D +G E+ + PP
Sbjct: 223 SSEEEESEDEAVHCDEGSEAEEEDSSATPVLQER--DSKGAGQEQGMPAGKKRPPEARAE 280
Query: 108 TRKLDDDKPPEICLEPREPVVNDEMCDVCEVWTAESLFPCR-VCTRVFHDGCLRRMGYIQ 166
T K + K P C + + +V E E L P + V R+ + + GYI
Sbjct: 281 TEKPANQKEPTTCHTVK---LRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIF 337
Query: 167 GDSAAE 172
D + E
Sbjct: 338 VDFSNE 343
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 30.4 bits (67), Expect = 3.0
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 51 SVQEVQEEKEA---EAGTSVVQEESSAGRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRP 107
S +E + E EA + G+ +E+SSA ER D +G E+ + PP
Sbjct: 223 SSEEEESEDEAVHCDEGSEAEEEDSSATPVLQER--DSKGAGQEQGMPAGKKRPPEARAE 280
Query: 108 TRKLDDDKPPEICLEPREPVVNDEMCDVCEVWTAESLFPCR-VCTRVFHDGCLRRMGYIQ 166
T K + K P C + + +V E E L P + V R+ + + GYI
Sbjct: 281 TEKPANQKEPTTCHTVK---LRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIF 337
Query: 167 GDSAAE 172
D + E
Sbjct: 338 VDFSNE 343
>gi|31543392 peroxisome proliferator-activated receptor gamma,
coactivator 1 beta [Homo sapiens]
Length = 1023
Score = 30.4 bits (67), Expect = 3.0
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 11/120 (9%)
Query: 14 VQKVSLAVSAFKDGLRDRPSIRRTGELPGSRRGTVEGSVQEVQEEKEAEAGTSVVQEESS 73
V++V +A S G RPS+R L R +Q+ +EE E E +EE
Sbjct: 391 VEEVRIAASPKSTG--PRPSLRPL-RLEVKREVRRPARLQQQEEEDEEEEEEE--EEEEK 445
Query: 74 AGRAAWERLRDGRGVEPEEFDR--TSRFTPPAFIRPTRKLDDDKPPEICLEPREPVVNDE 131
W R R GRG+ + R S P +R +R+L+ + P + EP+V E
Sbjct: 446 EEEEEWGRKRPGRGLPWTKLGRKLESSVCP---VRRSRRLNPELGPWLTFAD-EPLVPSE 501
>gi|148727368 bromodomain and PHD finger containing, 3 [Homo
sapiens]
Length = 1205
Score = 30.4 bits (67), Expect = 3.0
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 15/106 (14%)
Query: 32 PSIRRT---GELPGSRRGTVEGSVQEVQEEKEAEAGTSVVQEESSAGRAAWERLRDGRGV 88
PS+ +T GELP +G Q +QEE E + + + + G
Sbjct: 791 PSLNKTVSNGELPAGPQGDAAVLEQALQEEPEDDG-------DRDDSKLPPPPTLEPTGP 843
Query: 89 EPEEFDRTSRFTPPAFIRPTRKLDDDKPPEICLEPREPVVNDEMCD 134
P ++ S PP + ++D KPP L+PR+ V DE+ +
Sbjct: 844 APSLSEQESPPEPPTL----KPINDSKPPSRFLKPRK-VEEDELLE 884
Score = 28.9 bits (63), Expect = 8.6
Identities = 22/75 (29%), Positives = 31/75 (41%)
Query: 33 SIRRTGELPGSRRGTVEGSVQEVQEEKEAEAGTSVVQEESSAGRAAWERLRDGRGVEPEE 92
SI TG+ G + G E +E EE+E EA V + + L+ EPEE
Sbjct: 403 SISETGDEEGLKEGDGEEEEEEEVEEEEQEAQGGVSGSLKGVPKKSKMSLKQKIKKEPEE 462
Query: 93 FDRTSRFTPPAFIRP 107
+ + T P P
Sbjct: 463 AGQDTPSTLPMLAVP 477
>gi|24371268 nucleosome assembly protein 1-like 5 [Homo sapiens]
Length = 182
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 31 RPSIRRTGELPGSRRG---TVEGSVQEVQE-EKEAEAGTSVVQEESSAGRAAWERLRDGR 86
+P + + EL G G T+EG +E +E E + E G +EE++A AA + D
Sbjct: 114 KPLLAKIQELTGEMEGCAWTLEGEEEEEEEYEDDEEEGEDEEEEEAAAEAAAGAKHDDAH 173
Query: 87 GVEPEE 92
P++
Sbjct: 174 AEMPDD 179
>gi|13128998 sodium channel modifier 1 [Homo sapiens]
Length = 230
Score = 30.4 bits (67), Expect = 3.0
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 278 QQLRPQNSLLRLLTVKERERARAAFLARGSGSTVSEAECRRAQHSWFC---KRFPEAPSC 334
Q + QN L R E +A A L + ++++ RA H C K PEAP
Sbjct: 87 QNPKHQNELRR-----EETKAEAPLLTQTR--LITQSALHRAPHYNSCCRRKYRPEAPGP 139
Query: 335 SVSISHVGPIADSSPASSSSKSQDKTLLPTEQESRFVDWP 374
SVS+S + P + S+ + P +ES V P
Sbjct: 140 SVSLSPMPPSEVKLQSGKISREPEPAAGPQAEESATVSAP 179
>gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens]
Length = 832
Score = 30.0 bits (66), Expect = 3.9
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 4 LMSKRQTVEQVQKVSLAVSAFKDGLR-----DRPSIRRTGELPGSRRGTVEGSVQEVQEE 58
L+ ++Q Q++KV +S FKDG+R P IR TG P + + +E ++
Sbjct: 673 LIERKQA--QIRKVYPGLSCFKDGVRQIPIESIPGIRETGWKPSGKEKS-----KEPRDP 725
Query: 59 KEAEAGTSVVQEESSAGRAAWERLRDGRGVEPEEFDRTSRF 99
+ + + ++ + ++AW + + E + RF
Sbjct: 726 DQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRF 766
>gi|21071001 autocrine motility factor receptor [Homo sapiens]
Length = 643
Score = 30.0 bits (66), Expect = 3.9
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 123 PREPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMA 177
P E VN++ C +C W + C +FH+ CLR +++ D++ M+
Sbjct: 331 PEELAVNNDDCAIC--WDSMQAARKLPCGHLFHNSCLR--SWLEQDTSCPTCRMS 381
>gi|210032790 hypothetical protein LOC27146 [Homo sapiens]
Length = 1060
Score = 29.6 bits (65), Expect = 5.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 225 RYRHQAAKRGDRDRALSEEQEEQAARQFAALDPEHRGHIE 264
+++ +A K D+ R L E Q+ Q AR+ L EHR ++
Sbjct: 827 QHQQEAQKLRDQRRFLEETQQAQRAREVETLRQEHRKEMQ 866
>gi|20149643 zinc finger, HIT type 6 [Homo sapiens]
Length = 470
Score = 29.6 bits (65), Expect = 5.0
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 30/127 (23%)
Query: 36 RTGELPGSRRGTVEGSVQEVQEEKEAEAGTSVVQEESSAGRAAWERLRDGRGVEPEEFDR 95
+ GE P + V+G V + E KE + + QEE G+ E L G V+ E+
Sbjct: 131 KVGE-PEVKEEKVKGEVMDWSEVKEEKDNLEIKQEEKFVGQCIKEELMHGECVKEEK--- 186
Query: 96 TSRFTPPAFIRPTRKLDDDKPPEICLEPREPVVNDEM----------CDVCEVWTAESLF 145
F++ +DD K E EP +N + C+ C T E+ +
Sbjct: 187 -------DFLK-KEIVDDTKVKE------EPPINHPVGCKRKLAMSRCETC--GTEEAKY 230
Query: 146 PCRVCTR 152
C C R
Sbjct: 231 RCPRCMR 237
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,602,208
Number of Sequences: 37866
Number of extensions: 795771
Number of successful extensions: 3543
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 3514
Number of HSP's gapped (non-prelim): 62
length of query: 400
length of database: 18,247,518
effective HSP length: 104
effective length of query: 296
effective length of database: 14,309,454
effective search space: 4235598384
effective search space used: 4235598384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.