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Search of human proteins with 149588791
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|149588791 retinoic acid receptor responder (tazarotene
induced) 3 [Homo sapiens]
(164 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|149588791 retinoic acid receptor responder (tazarotene induce... 333 3e-92
gi|189571621 HRAS-like suppressor 3 [Homo sapiens] 165 1e-41
gi|189571618 HRAS-like suppressor 3 [Homo sapiens] 165 1e-41
gi|8923526 HRAS-like suppressor 2 [Homo sapiens] 160 4e-40
gi|16905367 HRAS-like suppressor family, member 5 isoform 1 [Hom... 149 1e-36
gi|226491950 HRAS-like suppressor family, member 5 isoform 2 [Ho... 149 1e-36
gi|9966859 HRAS-like suppressor [Homo sapiens] 137 4e-33
gi|226528146 HRAS-like suppressor family, member 5 isoform 3 [Ho... 123 6e-29
gi|46249410 lecithin retinol acyltransferase [Homo sapiens] 57 9e-09
gi|28557798 family with sequence similarity 84, member B [Homo s... 51 4e-07
gi|21553329 family with sequence similarity 84, member A [Homo s... 45 3e-05
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 30 0.94
gi|6912330 deafness locus associated putative guanine nucleotide... 30 0.94
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 30 0.94
gi|30795121 F-box and WD repeat domain containing 8 isoform 2 [H... 29 2.1
gi|30795123 F-box and WD repeat domain containing 8 isoform 1 [H... 29 2.1
gi|7657587 solute carrier family 6 (neurotransmitter transporter... 28 4.6
gi|157388965 schlafen family member 11 [Homo sapiens] 28 4.6
gi|157388963 schlafen family member 11 [Homo sapiens] 28 4.6
gi|157388961 schlafen family member 11 [Homo sapiens] 28 4.6
gi|157388959 schlafen family member 11 [Homo sapiens] 28 4.6
gi|157388957 schlafen family member 11 [Homo sapiens] 28 4.6
gi|209969819 hypothetical protein LOC253143 [Homo sapiens] 28 4.6
gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo ... 27 6.1
gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo s... 27 6.1
gi|169166558 PREDICTED: similar to hCG18094 [Homo sapiens] 27 7.9
gi|169167297 PREDICTED: similar to hCG18094 [Homo sapiens] 27 7.9
gi|169166473 PREDICTED: similar to hCG18094 [Homo sapiens] 27 7.9
gi|212720861 tubulin tyrosine ligase-like family, member 11 a [H... 27 7.9
gi|89363028 tubulin tyrosine ligase-like family, member 11 b [Ho... 27 7.9
>gi|149588791 retinoic acid receptor responder (tazarotene induced)
3 [Homo sapiens]
Length = 164
Score = 333 bits (855), Expect = 3e-92
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV 60
MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV
Sbjct: 1 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV 60
Query: 61 KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL
Sbjct: 61 KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
Query: 121 RYGKSRCKQVEKAKVEVGVATALGILVVAGCSFAIRRYQKKATA 164
RYGKSRCKQVEKAKVEVGVATALGILVVAGCSFAIRRYQKKATA
Sbjct: 121 RYGKSRCKQVEKAKVEVGVATALGILVVAGCSFAIRRYQKKATA 164
>gi|189571621 HRAS-like suppressor 3 [Homo sapiens]
Length = 162
Score = 165 bits (418), Expect = 1e-41
Identities = 83/162 (51%), Positives = 107/162 (66%), Gaps = 1/162 (0%)
Query: 1 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV 60
M +P EPKPGDLIEIFR Y HWA+Y+GDGYV+HLAPPSE GAG++SV S L++ A V
Sbjct: 1 MRAPIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIV 60
Query: 61 KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
K+E L DV G Y+VNN D +Y P P II A+E+VGQ++ Y + S NCEHFV +L
Sbjct: 61 KKELLYDVAGSDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSENCEHFVNEL 120
Query: 121 RYGKSRCKQVEKAKVEVGVA-TALGILVVAGCSFAIRRYQKK 161
RYG +R QV + VA L + + G F+ + QK+
Sbjct: 121 RYGVARSDQVRDVIIAASVAGMGLAAMSLIGVMFSRNKRQKQ 162
>gi|189571618 HRAS-like suppressor 3 [Homo sapiens]
Length = 162
Score = 165 bits (418), Expect = 1e-41
Identities = 83/162 (51%), Positives = 107/162 (66%), Gaps = 1/162 (0%)
Query: 1 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV 60
M +P EPKPGDLIEIFR Y HWA+Y+GDGYV+HLAPPSE GAG++SV S L++ A V
Sbjct: 1 MRAPIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIV 60
Query: 61 KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
K+E L DV G Y+VNN D +Y P P II A+E+VGQ++ Y + S NCEHFV +L
Sbjct: 61 KKELLYDVAGSDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSENCEHFVNEL 120
Query: 121 RYGKSRCKQVEKAKVEVGVA-TALGILVVAGCSFAIRRYQKK 161
RYG +R QV + VA L + + G F+ + QK+
Sbjct: 121 RYGVARSDQVRDVIIAASVAGMGLAAMSLIGVMFSRNKRQKQ 162
>gi|8923526 HRAS-like suppressor 2 [Homo sapiens]
Length = 162
Score = 160 bits (406), Expect = 4e-40
Identities = 81/143 (56%), Positives = 95/143 (66%)
Query: 1 MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV 60
MA P+ GDLIEI R GY HWA+Y+GDGYV+HLAP SE GAG++SV S L+N A V
Sbjct: 1 MALARPRPRLGDLIEISRFGYAHWAIYVGDGYVVHLAPASEIAGAGAASVLSALTNKAIV 60
Query: 61 KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
K+E L V GG YRVNN D Y P P I+ A+E+VGQ++ YS+ S NCEHFV L
Sbjct: 61 KKELLSVVAGGDNYRVNNKHDDRYTPLPSNKIVKRAEELVGQELPYSLTSDNCEHFVNHL 120
Query: 121 RYGKSRCKQVEKAKVEVGVATAL 143
RYG SR QV A VGVA L
Sbjct: 121 RYGVSRSDQVTGAVTTVGVAAGL 143
>gi|16905367 HRAS-like suppressor family, member 5 isoform 1 [Homo
sapiens]
Length = 279
Score = 149 bits (376), Expect = 1e-36
Identities = 76/141 (53%), Positives = 95/141 (67%), Gaps = 2/141 (1%)
Query: 8 PKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLED 67
P+PGDLIEIFR+GYEHWA+Y+ D V+HLAPPSE GS + S+ SN A VK RLED
Sbjct: 130 PRPGDLIEIFRIGYEHWAIYVEDDCVVHLAPPSEEFEVGS--ITSIFSNRAVVKYSRLED 187
Query: 68 VVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQLRYGKSRC 127
V+ GC ++VNN LD Y P PV+ II K+MV + ++YS++ NCEHFV LRYG R
Sbjct: 188 VLHGCSWKVNNKLDGTYLPLPVDKIIQRTKKMVNKIVQYSLIEGNCEHFVNGLRYGVPRS 247
Query: 128 KQVEKAKVEVGVATALGILVV 148
+QVE A +E A I V
Sbjct: 248 QQVEHALMEGAKAAGAVISAV 268
>gi|226491950 HRAS-like suppressor family, member 5 isoform 2 [Homo
sapiens]
Length = 269
Score = 149 bits (376), Expect = 1e-36
Identities = 76/141 (53%), Positives = 95/141 (67%), Gaps = 2/141 (1%)
Query: 8 PKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLED 67
P+PGDLIEIFR+GYEHWA+Y+ D V+HLAPPSE GS + S+ SN A VK RLED
Sbjct: 120 PRPGDLIEIFRIGYEHWAIYVEDDCVVHLAPPSEEFEVGS--ITSIFSNRAVVKYSRLED 177
Query: 68 VVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQLRYGKSRC 127
V+ GC ++VNN LD Y P PV+ II K+MV + ++YS++ NCEHFV LRYG R
Sbjct: 178 VLHGCSWKVNNKLDGTYLPLPVDKIIQRTKKMVNKIVQYSLIEGNCEHFVNGLRYGVPRS 237
Query: 128 KQVEKAKVEVGVATALGILVV 148
+QVE A +E A I V
Sbjct: 238 QQVEHALMEGAKAAGAVISAV 258
>gi|9966859 HRAS-like suppressor [Homo sapiens]
Length = 168
Score = 137 bits (345), Expect = 4e-33
Identities = 69/135 (51%), Positives = 91/135 (67%), Gaps = 1/135 (0%)
Query: 8 PKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLED 67
P PGDLIE+FR GY+HWALY+GDGYVI++AP P A +S SV S+ A VK + L+D
Sbjct: 15 PCPGDLIEVFRPGYQHWALYLGDGYVINIAPVDGIP-ASFTSAKSVFSSKALVKMQLLKD 73
Query: 68 VVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQLRYGKSRC 127
VVG YR+NN D Y P PVE II ++ ++GQ++ Y+++ NCEHFVT LRYG+
Sbjct: 74 VVGNDTYRINNKYDETYPPLPVEEIIKRSEFVIGQEVAYNLLVNNCEHFVTLLRYGEGVS 133
Query: 128 KQVEKAKVEVGVATA 142
+Q +A V TA
Sbjct: 134 EQANRAISTVEFVTA 148
>gi|226528146 HRAS-like suppressor family, member 5 isoform 3 [Homo
sapiens]
Length = 253
Score = 123 bits (309), Expect = 6e-29
Identities = 59/106 (55%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 8 PKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLED 67
P+PGDLIEIFR+GYEHWA+Y+ D V+HLAPPSE GS + S+ SN A VK RLED
Sbjct: 130 PRPGDLIEIFRIGYEHWAIYVEDDCVVHLAPPSEEFEVGS--ITSIFSNRAVVKYSRLED 187
Query: 68 VVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNC 113
V+ GC ++VNN LD Y P PV+ II K+MV + ++YS++ NC
Sbjct: 188 VLHGCSWKVNNKLDGTYLPLPVDKIIQRTKKMVNKIVQYSLIEGNC 233
>gi|46249410 lecithin retinol acyltransferase [Homo sapiens]
Length = 230
Score = 56.6 bits (135), Expect = 9e-09
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 15/135 (11%)
Query: 11 GDLIEIFRLGYEHWALYIGDGYVIHLAPP-----------SEYPGAGSSSVFSVLSNSAE 59
GD++E+ R H+ +Y+GD V H+ P ++ + + V+ A
Sbjct: 48 GDVLEVPRTHLTHYGIYLGDNRVAHMMPDILLALTDDMGRTQKVVSNKRLILGVIVKVAS 107
Query: 60 VKRERLEDVVGGCCYRVNNSLDHEYQPRPV--EVIISSAKEMVGQKMKYSIVSRNCEHFV 117
++ + +ED G VN+ LD Q + + E + A++++G YS++ NCEHFV
Sbjct: 108 IRVDTVEDFAYGANILVNH-LDESLQKKALLNEEVARRAEKLLGFT-PYSLLWNNCEHFV 165
Query: 118 TQLRYGKSRCKQVEK 132
T RYG Q +K
Sbjct: 166 TYCRYGTPISPQSDK 180
>gi|28557798 family with sequence similarity 84, member B [Homo
sapiens]
Length = 310
Score = 51.2 bits (121), Expect = 4e-07
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 22/121 (18%)
Query: 9 KPGDLIE-IFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLED 67
KPGDL+E + + Y HWA+Y+G+ V+HL + EV L D
Sbjct: 117 KPGDLVEFVSQAQYPHWAVYVGNFQVVHL-------------------HRLEVINSFLTD 157
Query: 68 VVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQLRYGKSRC 127
G RV N L + Y+P ++ +A VG K + + RN E F RYGK
Sbjct: 158 ASQGRRGRVVNDL-YRYKPLSSSAVVRNALAHVGAKER-ELSWRNSESFAAWCRYGKREF 215
Query: 128 K 128
K
Sbjct: 216 K 216
>gi|21553329 family with sequence similarity 84, member A [Homo
sapiens]
Length = 292
Score = 45.1 bits (105), Expect = 3e-05
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 29/128 (22%)
Query: 9 KPGDLIEIFRLG--------YEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV 60
+PGDL+E+ L HWA+Y+G G +IHL + E+
Sbjct: 121 EPGDLLELLWLQPAPEPPAPAPHWAVYVGGGQIIHL-------------------HQGEI 161
Query: 61 KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
+++ L + RV NS + Y+P E+++ +A +G K + I N E F
Sbjct: 162 RQDSLYEAGAANVGRVVNSW-YRYRPLVAELVVQNACGHLGLKSE-EICWTNSESFAAWC 219
Query: 121 RYGKSRCK 128
R+GK K
Sbjct: 220 RFGKREFK 227
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 30.0 bits (66), Expect = 0.94
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 9 KPGDLIEIFRLGYEHWALY---IGDGYVIHLAPPSEYP 43
KPGDL+ GY HW I DG V PP++YP
Sbjct: 6 KPGDLVFAKMKGYPHWPARIDDIADGAV--KPPPNKYP 41
>gi|6912330 deafness locus associated putative guanine nucleotide
exchange factor [Homo sapiens]
Length = 458
Score = 30.0 bits (66), Expect = 0.94
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 21 YEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVK--RERLEDVVGGCCYRV-- 76
YE W L D ++ PP+ P + L+ + EV E ++GG CY
Sbjct: 304 YEGWKLEKQDSFLPCSRPPNSMPSSPHC-----LTGATEVSCGSEHNLAIIGGVCYSWGW 358
Query: 77 -------NNSLDHEYQPRPVEVIISSAKEMVG 101
+ + + + P+PV+ ++SS+ +VG
Sbjct: 359 NEHGMCGDGTEANVWAPKPVQALLSSSGLLVG 390
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 30.0 bits (66), Expect = 0.94
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 9 KPGDLIEIFRLGYEHWALY---IGDGYVIHLAPPSEYP 43
KPGDL+ GY HW I DG V PP++YP
Sbjct: 6 KPGDLVFAKMKGYPHWPARIDDIADGAV--KPPPNKYP 41
>gi|30795121 F-box and WD repeat domain containing 8 isoform 2 [Homo
sapiens]
Length = 532
Score = 28.9 bits (63), Expect = 2.1
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 66 EDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNC--EHFVTQLRY 122
E +V YR+N L Y PV+ I S+ ++ + Y V RN + F T R+
Sbjct: 428 EGLVSVWDYRMNQKLWEVYSGHPVQHISFSSHSLITANVPYQTVMRNADLDSFTTHRRH 486
>gi|30795123 F-box and WD repeat domain containing 8 isoform 1 [Homo
sapiens]
Length = 598
Score = 28.9 bits (63), Expect = 2.1
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 66 EDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNC--EHFVTQLRY 122
E +V YR+N L Y PV+ I S+ ++ + Y V RN + F T R+
Sbjct: 494 EGLVSVWDYRMNQKLWEVYSGHPVQHISFSSHSLITANVPYQTVMRNADLDSFTTHRRH 552
>gi|7657587 solute carrier family 6 (neurotransmitter transporter,
GABA), member 11 [Homo sapiens]
Length = 632
Score = 27.7 bits (60), Expect = 4.6
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 25 ALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLEDVVGGCCYRVNNSLDHEY 84
AL +G+G A SE PG G SS + + VKR++ G NN
Sbjct: 6 ALPLGNGKAAEEARESEAPGGGCSSGGAAPARHPRVKRDKAVHERG----HWNNK----- 56
Query: 85 QPRPVEVIISSAKEMVG 101
VE ++S A E++G
Sbjct: 57 ----VEFVLSVAGEIIG 69
>gi|157388965 schlafen family member 11 [Homo sapiens]
Length = 901
Score = 27.7 bits (60), Expect = 4.6
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 63 ERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
E++ V C R D Y P+ V V++S+AKE+ + KY ++ + V QL
Sbjct: 786 EQIMTCVADTCRRF---FDRGYSPKDVAVLVSTAKEV--EHYKYELLKAMRKKRVVQL 838
>gi|157388963 schlafen family member 11 [Homo sapiens]
Length = 901
Score = 27.7 bits (60), Expect = 4.6
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 63 ERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
E++ V C R D Y P+ V V++S+AKE+ + KY ++ + V QL
Sbjct: 786 EQIMTCVADTCRRF---FDRGYSPKDVAVLVSTAKEV--EHYKYELLKAMRKKRVVQL 838
>gi|157388961 schlafen family member 11 [Homo sapiens]
Length = 901
Score = 27.7 bits (60), Expect = 4.6
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 63 ERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
E++ V C R D Y P+ V V++S+AKE+ + KY ++ + V QL
Sbjct: 786 EQIMTCVADTCRRF---FDRGYSPKDVAVLVSTAKEV--EHYKYELLKAMRKKRVVQL 838
>gi|157388959 schlafen family member 11 [Homo sapiens]
Length = 901
Score = 27.7 bits (60), Expect = 4.6
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 63 ERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
E++ V C R D Y P+ V V++S+AKE+ + KY ++ + V QL
Sbjct: 786 EQIMTCVADTCRRF---FDRGYSPKDVAVLVSTAKEV--EHYKYELLKAMRKKRVVQL 838
>gi|157388957 schlafen family member 11 [Homo sapiens]
Length = 901
Score = 27.7 bits (60), Expect = 4.6
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 63 ERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
E++ V C R D Y P+ V V++S+AKE+ + KY ++ + V QL
Sbjct: 786 EQIMTCVADTCRRF---FDRGYSPKDVAVLVSTAKEV--EHYKYELLKAMRKKRVVQL 838
>gi|209969819 hypothetical protein LOC253143 [Homo sapiens]
Length = 2151
Score = 27.7 bits (60), Expect = 4.6
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 34 IHLAP-PSEYPGAGSSSVFSVLSNSAEVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEVI 92
+H P PS P + S+LS + + E V CC +LDH +P ++
Sbjct: 36 LHADPEPSVIPDVKPGASSSLLSQNRALPLELQRTHVESCCEETYETLDHGSEPGRCGLV 95
Query: 93 ISSA 96
S+A
Sbjct: 96 DSTA 99
>gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo
sapiens]
Length = 1726
Score = 27.3 bits (59), Expect = 6.1
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 20 GYEHWALYIGDGYVIHLAPP--SEYPGAGSSSVFSVLSNSAE 59
G +W + +G G +I PP PGA SSV V SAE
Sbjct: 204 GLPNWGMAVGMGAII---PPHLQGLPGANGSSVSQVSGGSAE 242
>gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo
sapiens]
Length = 1690
Score = 27.3 bits (59), Expect = 6.1
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 20 GYEHWALYIGDGYVIHLAPP--SEYPGAGSSSVFSVLSNSAE 59
G +W + +G G +I PP PGA SSV V SAE
Sbjct: 204 GLPNWGMAVGMGAII---PPHLQGLPGANGSSVSQVSGGSAE 242
>gi|169166558 PREDICTED: similar to hCG18094 [Homo sapiens]
Length = 459
Score = 26.9 bits (58), Expect = 7.9
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 44 GAGSSSVFSVLSNSAEVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQK 103
GAG S F + K +R E + C R+ L HE + ++ K+ V Q+
Sbjct: 71 GAGDFSEFFEWQKKMQAK-DREEQLAASECRRLQGKLSHEEAVLARQSLMQENKQRVEQQ 129
Query: 104 MKYSIVSRNCEHFVTQLRYGKSRCKQVEK 132
K + + +LR +SR + VE+
Sbjct: 130 -KEQMAKLMLQRAERRLREDRSRKELVEQ 157
>gi|169167297 PREDICTED: similar to hCG18094 [Homo sapiens]
Length = 459
Score = 26.9 bits (58), Expect = 7.9
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 44 GAGSSSVFSVLSNSAEVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQK 103
GAG S F + K +R E + C R+ L HE + ++ K+ V Q+
Sbjct: 71 GAGDFSEFFEWQKKMQAK-DREEQLAASECRRLQGKLSHEEAVLARQSLMQENKQRVEQQ 129
Query: 104 MKYSIVSRNCEHFVTQLRYGKSRCKQVEK 132
K + + +LR +SR + VE+
Sbjct: 130 -KEQMAKLMLQRAERRLREDRSRKELVEQ 157
>gi|169166473 PREDICTED: similar to hCG18094 [Homo sapiens]
Length = 459
Score = 26.9 bits (58), Expect = 7.9
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 44 GAGSSSVFSVLSNSAEVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQK 103
GAG S F + K +R E + C R+ L HE + ++ K+ V Q+
Sbjct: 71 GAGDFSEFFEWQKKMQAK-DREEQLAASECRRLQGKLSHEEAVLARQSLMQENKQRVEQQ 129
Query: 104 MKYSIVSRNCEHFVTQLRYGKSRCKQVEK 132
K + + +LR +SR + VE+
Sbjct: 130 -KEQMAKLMLQRAERRLREDRSRKELVEQ 157
>gi|212720861 tubulin tyrosine ligase-like family, member 11 a [Homo
sapiens]
Length = 800
Score = 26.9 bits (58), Expect = 7.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 4 PHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFS 52
P+QEP P +L IF + +++L I G IH S+ GS FS
Sbjct: 416 PYQEPTPKNLHRIF-MHLTNYSLNIHSGNFIH----SDSASTGSKRTFS 459
>gi|89363028 tubulin tyrosine ligase-like family, member 11 b [Homo
sapiens]
Length = 538
Score = 26.9 bits (58), Expect = 7.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 4 PHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFS 52
P+QEP P +L IF + +++L I G IH S+ GS FS
Sbjct: 416 PYQEPTPKNLHRIF-MHLTNYSLNIHSGNFIH----SDSASTGSKRTFS 459
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,397,320
Number of Sequences: 37866
Number of extensions: 266941
Number of successful extensions: 612
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 30
length of query: 164
length of database: 18,247,518
effective HSP length: 94
effective length of query: 70
effective length of database: 14,688,114
effective search space: 1028167980
effective search space used: 1028167980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.