Guide to the Human Genome
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Search of human proteins with 149588791

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|149588791 retinoic acid receptor responder (tazarotene
induced) 3 [Homo sapiens]
         (164 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|149588791 retinoic acid receptor responder (tazarotene induce...   333   3e-92
gi|189571621 HRAS-like suppressor 3 [Homo sapiens]                    165   1e-41
gi|189571618 HRAS-like suppressor 3 [Homo sapiens]                    165   1e-41
gi|8923526 HRAS-like suppressor 2 [Homo sapiens]                      160   4e-40
gi|16905367 HRAS-like suppressor family, member 5 isoform 1 [Hom...   149   1e-36
gi|226491950 HRAS-like suppressor family, member 5 isoform 2 [Ho...   149   1e-36
gi|9966859 HRAS-like suppressor [Homo sapiens]                        137   4e-33
gi|226528146 HRAS-like suppressor family, member 5 isoform 3 [Ho...   123   6e-29
gi|46249410 lecithin retinol acyltransferase [Homo sapiens]            57   9e-09
gi|28557798 family with sequence similarity 84, member B [Homo s...    51   4e-07
gi|21553329 family with sequence similarity 84, member A [Homo s...    45   3e-05
gi|48255931 hepatoma-derived growth factor-related protein 2 iso...    30   0.94 
gi|6912330 deafness locus associated putative guanine nucleotide...    30   0.94 
gi|14249158 hepatoma-derived growth factor-related protein 2 iso...    30   0.94 
gi|30795121 F-box and WD repeat domain containing 8 isoform 2 [H...    29   2.1  
gi|30795123 F-box and WD repeat domain containing 8 isoform 1 [H...    29   2.1  
gi|7657587 solute carrier family 6 (neurotransmitter transporter...    28   4.6  
gi|157388965 schlafen family member 11 [Homo sapiens]                  28   4.6  
gi|157388963 schlafen family member 11 [Homo sapiens]                  28   4.6  
gi|157388961 schlafen family member 11 [Homo sapiens]                  28   4.6  
gi|157388959 schlafen family member 11 [Homo sapiens]                  28   4.6  
gi|157388957 schlafen family member 11 [Homo sapiens]                  28   4.6  
gi|209969819 hypothetical protein LOC253143 [Homo sapiens]             28   4.6  
gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo ...    27   6.1  
gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo s...    27   6.1  
gi|169166558 PREDICTED: similar to hCG18094 [Homo sapiens]             27   7.9  
gi|169167297 PREDICTED: similar to hCG18094 [Homo sapiens]             27   7.9  
gi|169166473 PREDICTED: similar to hCG18094 [Homo sapiens]             27   7.9  
gi|212720861 tubulin tyrosine ligase-like family, member 11 a [H...    27   7.9  
gi|89363028 tubulin tyrosine ligase-like family, member 11 b [Ho...    27   7.9  

>gi|149588791 retinoic acid receptor responder (tazarotene induced)
           3 [Homo sapiens]
          Length = 164

 Score =  333 bits (855), Expect = 3e-92
 Identities = 164/164 (100%), Positives = 164/164 (100%)

Query: 1   MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV 60
           MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV
Sbjct: 1   MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV 60

Query: 61  KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
           KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL
Sbjct: 61  KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120

Query: 121 RYGKSRCKQVEKAKVEVGVATALGILVVAGCSFAIRRYQKKATA 164
           RYGKSRCKQVEKAKVEVGVATALGILVVAGCSFAIRRYQKKATA
Sbjct: 121 RYGKSRCKQVEKAKVEVGVATALGILVVAGCSFAIRRYQKKATA 164


>gi|189571621 HRAS-like suppressor 3 [Homo sapiens]
          Length = 162

 Score =  165 bits (418), Expect = 1e-41
 Identities = 83/162 (51%), Positives = 107/162 (66%), Gaps = 1/162 (0%)

Query: 1   MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV 60
           M +P  EPKPGDLIEIFR  Y HWA+Y+GDGYV+HLAPPSE  GAG++SV S L++ A V
Sbjct: 1   MRAPIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIV 60

Query: 61  KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
           K+E L DV G   Y+VNN  D +Y P P   II  A+E+VGQ++ Y + S NCEHFV +L
Sbjct: 61  KKELLYDVAGSDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSENCEHFVNEL 120

Query: 121 RYGKSRCKQVEKAKVEVGVA-TALGILVVAGCSFAIRRYQKK 161
           RYG +R  QV    +   VA   L  + + G  F+  + QK+
Sbjct: 121 RYGVARSDQVRDVIIAASVAGMGLAAMSLIGVMFSRNKRQKQ 162


>gi|189571618 HRAS-like suppressor 3 [Homo sapiens]
          Length = 162

 Score =  165 bits (418), Expect = 1e-41
 Identities = 83/162 (51%), Positives = 107/162 (66%), Gaps = 1/162 (0%)

Query: 1   MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV 60
           M +P  EPKPGDLIEIFR  Y HWA+Y+GDGYV+HLAPPSE  GAG++SV S L++ A V
Sbjct: 1   MRAPIPEPKPGDLIEIFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIV 60

Query: 61  KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
           K+E L DV G   Y+VNN  D +Y P P   II  A+E+VGQ++ Y + S NCEHFV +L
Sbjct: 61  KKELLYDVAGSDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSENCEHFVNEL 120

Query: 121 RYGKSRCKQVEKAKVEVGVA-TALGILVVAGCSFAIRRYQKK 161
           RYG +R  QV    +   VA   L  + + G  F+  + QK+
Sbjct: 121 RYGVARSDQVRDVIIAASVAGMGLAAMSLIGVMFSRNKRQKQ 162


>gi|8923526 HRAS-like suppressor 2 [Homo sapiens]
          Length = 162

 Score =  160 bits (406), Expect = 4e-40
 Identities = 81/143 (56%), Positives = 95/143 (66%)

Query: 1   MASPHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV 60
           MA     P+ GDLIEI R GY HWA+Y+GDGYV+HLAP SE  GAG++SV S L+N A V
Sbjct: 1   MALARPRPRLGDLIEISRFGYAHWAIYVGDGYVVHLAPASEIAGAGAASVLSALTNKAIV 60

Query: 61  KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
           K+E L  V GG  YRVNN  D  Y P P   I+  A+E+VGQ++ YS+ S NCEHFV  L
Sbjct: 61  KKELLSVVAGGDNYRVNNKHDDRYTPLPSNKIVKRAEELVGQELPYSLTSDNCEHFVNHL 120

Query: 121 RYGKSRCKQVEKAKVEVGVATAL 143
           RYG SR  QV  A   VGVA  L
Sbjct: 121 RYGVSRSDQVTGAVTTVGVAAGL 143


>gi|16905367 HRAS-like suppressor family, member 5 isoform 1 [Homo
           sapiens]
          Length = 279

 Score =  149 bits (376), Expect = 1e-36
 Identities = 76/141 (53%), Positives = 95/141 (67%), Gaps = 2/141 (1%)

Query: 8   PKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLED 67
           P+PGDLIEIFR+GYEHWA+Y+ D  V+HLAPPSE    GS  + S+ SN A VK  RLED
Sbjct: 130 PRPGDLIEIFRIGYEHWAIYVEDDCVVHLAPPSEEFEVGS--ITSIFSNRAVVKYSRLED 187

Query: 68  VVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQLRYGKSRC 127
           V+ GC ++VNN LD  Y P PV+ II   K+MV + ++YS++  NCEHFV  LRYG  R 
Sbjct: 188 VLHGCSWKVNNKLDGTYLPLPVDKIIQRTKKMVNKIVQYSLIEGNCEHFVNGLRYGVPRS 247

Query: 128 KQVEKAKVEVGVATALGILVV 148
           +QVE A +E   A    I  V
Sbjct: 248 QQVEHALMEGAKAAGAVISAV 268


>gi|226491950 HRAS-like suppressor family, member 5 isoform 2 [Homo
           sapiens]
          Length = 269

 Score =  149 bits (376), Expect = 1e-36
 Identities = 76/141 (53%), Positives = 95/141 (67%), Gaps = 2/141 (1%)

Query: 8   PKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLED 67
           P+PGDLIEIFR+GYEHWA+Y+ D  V+HLAPPSE    GS  + S+ SN A VK  RLED
Sbjct: 120 PRPGDLIEIFRIGYEHWAIYVEDDCVVHLAPPSEEFEVGS--ITSIFSNRAVVKYSRLED 177

Query: 68  VVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQLRYGKSRC 127
           V+ GC ++VNN LD  Y P PV+ II   K+MV + ++YS++  NCEHFV  LRYG  R 
Sbjct: 178 VLHGCSWKVNNKLDGTYLPLPVDKIIQRTKKMVNKIVQYSLIEGNCEHFVNGLRYGVPRS 237

Query: 128 KQVEKAKVEVGVATALGILVV 148
           +QVE A +E   A    I  V
Sbjct: 238 QQVEHALMEGAKAAGAVISAV 258


>gi|9966859 HRAS-like suppressor [Homo sapiens]
          Length = 168

 Score =  137 bits (345), Expect = 4e-33
 Identities = 69/135 (51%), Positives = 91/135 (67%), Gaps = 1/135 (0%)

Query: 8   PKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLED 67
           P PGDLIE+FR GY+HWALY+GDGYVI++AP    P A  +S  SV S+ A VK + L+D
Sbjct: 15  PCPGDLIEVFRPGYQHWALYLGDGYVINIAPVDGIP-ASFTSAKSVFSSKALVKMQLLKD 73

Query: 68  VVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQLRYGKSRC 127
           VVG   YR+NN  D  Y P PVE II  ++ ++GQ++ Y+++  NCEHFVT LRYG+   
Sbjct: 74  VVGNDTYRINNKYDETYPPLPVEEIIKRSEFVIGQEVAYNLLVNNCEHFVTLLRYGEGVS 133

Query: 128 KQVEKAKVEVGVATA 142
           +Q  +A   V   TA
Sbjct: 134 EQANRAISTVEFVTA 148


>gi|226528146 HRAS-like suppressor family, member 5 isoform 3 [Homo
           sapiens]
          Length = 253

 Score =  123 bits (309), Expect = 6e-29
 Identities = 59/106 (55%), Positives = 76/106 (71%), Gaps = 2/106 (1%)

Query: 8   PKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLED 67
           P+PGDLIEIFR+GYEHWA+Y+ D  V+HLAPPSE    GS  + S+ SN A VK  RLED
Sbjct: 130 PRPGDLIEIFRIGYEHWAIYVEDDCVVHLAPPSEEFEVGS--ITSIFSNRAVVKYSRLED 187

Query: 68  VVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNC 113
           V+ GC ++VNN LD  Y P PV+ II   K+MV + ++YS++  NC
Sbjct: 188 VLHGCSWKVNNKLDGTYLPLPVDKIIQRTKKMVNKIVQYSLIEGNC 233


>gi|46249410 lecithin retinol acyltransferase [Homo sapiens]
          Length = 230

 Score = 56.6 bits (135), Expect = 9e-09
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 15/135 (11%)

Query: 11  GDLIEIFRLGYEHWALYIGDGYVIHLAPP-----------SEYPGAGSSSVFSVLSNSAE 59
           GD++E+ R    H+ +Y+GD  V H+ P            ++   +    +  V+   A 
Sbjct: 48  GDVLEVPRTHLTHYGIYLGDNRVAHMMPDILLALTDDMGRTQKVVSNKRLILGVIVKVAS 107

Query: 60  VKRERLEDVVGGCCYRVNNSLDHEYQPRPV--EVIISSAKEMVGQKMKYSIVSRNCEHFV 117
           ++ + +ED   G    VN+ LD   Q + +  E +   A++++G    YS++  NCEHFV
Sbjct: 108 IRVDTVEDFAYGANILVNH-LDESLQKKALLNEEVARRAEKLLGFT-PYSLLWNNCEHFV 165

Query: 118 TQLRYGKSRCKQVEK 132
           T  RYG     Q +K
Sbjct: 166 TYCRYGTPISPQSDK 180


>gi|28557798 family with sequence similarity 84, member B [Homo
           sapiens]
          Length = 310

 Score = 51.2 bits (121), Expect = 4e-07
 Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 22/121 (18%)

Query: 9   KPGDLIE-IFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLED 67
           KPGDL+E + +  Y HWA+Y+G+  V+HL                   +  EV    L D
Sbjct: 117 KPGDLVEFVSQAQYPHWAVYVGNFQVVHL-------------------HRLEVINSFLTD 157

Query: 68  VVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQLRYGKSRC 127
              G   RV N L + Y+P     ++ +A   VG K +  +  RN E F    RYGK   
Sbjct: 158 ASQGRRGRVVNDL-YRYKPLSSSAVVRNALAHVGAKER-ELSWRNSESFAAWCRYGKREF 215

Query: 128 K 128
           K
Sbjct: 216 K 216


>gi|21553329 family with sequence similarity 84, member A [Homo
           sapiens]
          Length = 292

 Score = 45.1 bits (105), Expect = 3e-05
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 29/128 (22%)

Query: 9   KPGDLIEIFRLG--------YEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEV 60
           +PGDL+E+  L           HWA+Y+G G +IHL                   +  E+
Sbjct: 121 EPGDLLELLWLQPAPEPPAPAPHWAVYVGGGQIIHL-------------------HQGEI 161

Query: 61  KRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
           +++ L +       RV NS  + Y+P   E+++ +A   +G K +  I   N E F    
Sbjct: 162 RQDSLYEAGAANVGRVVNSW-YRYRPLVAELVVQNACGHLGLKSE-EICWTNSESFAAWC 219

Query: 121 RYGKSRCK 128
           R+GK   K
Sbjct: 220 RFGKREFK 227


>gi|48255931 hepatoma-derived growth factor-related protein 2
          isoform 1 [Homo sapiens]
          Length = 671

 Score = 30.0 bits (66), Expect = 0.94
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 5/38 (13%)

Query: 9  KPGDLIEIFRLGYEHWALY---IGDGYVIHLAPPSEYP 43
          KPGDL+     GY HW      I DG V    PP++YP
Sbjct: 6  KPGDLVFAKMKGYPHWPARIDDIADGAV--KPPPNKYP 41


>gi|6912330 deafness locus associated putative guanine nucleotide
           exchange factor [Homo sapiens]
          Length = 458

 Score = 30.0 bits (66), Expect = 0.94
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 16/92 (17%)

Query: 21  YEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVK--RERLEDVVGGCCYRV-- 76
           YE W L   D ++    PP+  P +        L+ + EV    E    ++GG CY    
Sbjct: 304 YEGWKLEKQDSFLPCSRPPNSMPSSPHC-----LTGATEVSCGSEHNLAIIGGVCYSWGW 358

Query: 77  -------NNSLDHEYQPRPVEVIISSAKEMVG 101
                  + +  + + P+PV+ ++SS+  +VG
Sbjct: 359 NEHGMCGDGTEANVWAPKPVQALLSSSGLLVG 390


>gi|14249158 hepatoma-derived growth factor-related protein 2
          isoform 2 [Homo sapiens]
          Length = 670

 Score = 30.0 bits (66), Expect = 0.94
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 5/38 (13%)

Query: 9  KPGDLIEIFRLGYEHWALY---IGDGYVIHLAPPSEYP 43
          KPGDL+     GY HW      I DG V    PP++YP
Sbjct: 6  KPGDLVFAKMKGYPHWPARIDDIADGAV--KPPPNKYP 41


>gi|30795121 F-box and WD repeat domain containing 8 isoform 2 [Homo
           sapiens]
          Length = 532

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 66  EDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNC--EHFVTQLRY 122
           E +V    YR+N  L   Y   PV+ I  S+  ++   + Y  V RN   + F T  R+
Sbjct: 428 EGLVSVWDYRMNQKLWEVYSGHPVQHISFSSHSLITANVPYQTVMRNADLDSFTTHRRH 486


>gi|30795123 F-box and WD repeat domain containing 8 isoform 1 [Homo
           sapiens]
          Length = 598

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 66  EDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNC--EHFVTQLRY 122
           E +V    YR+N  L   Y   PV+ I  S+  ++   + Y  V RN   + F T  R+
Sbjct: 494 EGLVSVWDYRMNQKLWEVYSGHPVQHISFSSHSLITANVPYQTVMRNADLDSFTTHRRH 552


>gi|7657587 solute carrier family 6 (neurotransmitter transporter,
           GABA), member 11 [Homo sapiens]
          Length = 632

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 25  ALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLEDVVGGCCYRVNNSLDHEY 84
           AL +G+G     A  SE PG G SS  +  +    VKR++     G      NN      
Sbjct: 6   ALPLGNGKAAEEARESEAPGGGCSSGGAAPARHPRVKRDKAVHERG----HWNNK----- 56

Query: 85  QPRPVEVIISSAKEMVG 101
               VE ++S A E++G
Sbjct: 57  ----VEFVLSVAGEIIG 69


>gi|157388965 schlafen family member 11 [Homo sapiens]
          Length = 901

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 63  ERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
           E++   V   C R     D  Y P+ V V++S+AKE+  +  KY ++    +  V QL
Sbjct: 786 EQIMTCVADTCRRF---FDRGYSPKDVAVLVSTAKEV--EHYKYELLKAMRKKRVVQL 838


>gi|157388963 schlafen family member 11 [Homo sapiens]
          Length = 901

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 63  ERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
           E++   V   C R     D  Y P+ V V++S+AKE+  +  KY ++    +  V QL
Sbjct: 786 EQIMTCVADTCRRF---FDRGYSPKDVAVLVSTAKEV--EHYKYELLKAMRKKRVVQL 838


>gi|157388961 schlafen family member 11 [Homo sapiens]
          Length = 901

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 63  ERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
           E++   V   C R     D  Y P+ V V++S+AKE+  +  KY ++    +  V QL
Sbjct: 786 EQIMTCVADTCRRF---FDRGYSPKDVAVLVSTAKEV--EHYKYELLKAMRKKRVVQL 838


>gi|157388959 schlafen family member 11 [Homo sapiens]
          Length = 901

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 63  ERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
           E++   V   C R     D  Y P+ V V++S+AKE+  +  KY ++    +  V QL
Sbjct: 786 EQIMTCVADTCRRF---FDRGYSPKDVAVLVSTAKEV--EHYKYELLKAMRKKRVVQL 838


>gi|157388957 schlafen family member 11 [Homo sapiens]
          Length = 901

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 63  ERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQL 120
           E++   V   C R     D  Y P+ V V++S+AKE+  +  KY ++    +  V QL
Sbjct: 786 EQIMTCVADTCRRF---FDRGYSPKDVAVLVSTAKEV--EHYKYELLKAMRKKRVVQL 838


>gi|209969819 hypothetical protein LOC253143 [Homo sapiens]
          Length = 2151

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 34 IHLAP-PSEYPGAGSSSVFSVLSNSAEVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEVI 92
          +H  P PS  P     +  S+LS +  +  E     V  CC     +LDH  +P    ++
Sbjct: 36 LHADPEPSVIPDVKPGASSSLLSQNRALPLELQRTHVESCCEETYETLDHGSEPGRCGLV 95

Query: 93 ISSA 96
           S+A
Sbjct: 96 DSTA 99


>gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo
           sapiens]
          Length = 1726

 Score = 27.3 bits (59), Expect = 6.1
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 20  GYEHWALYIGDGYVIHLAPP--SEYPGAGSSSVFSVLSNSAE 59
           G  +W + +G G +I   PP     PGA  SSV  V   SAE
Sbjct: 204 GLPNWGMAVGMGAII---PPHLQGLPGANGSSVSQVSGGSAE 242


>gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo
           sapiens]
          Length = 1690

 Score = 27.3 bits (59), Expect = 6.1
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 20  GYEHWALYIGDGYVIHLAPP--SEYPGAGSSSVFSVLSNSAE 59
           G  +W + +G G +I   PP     PGA  SSV  V   SAE
Sbjct: 204 GLPNWGMAVGMGAII---PPHLQGLPGANGSSVSQVSGGSAE 242


>gi|169166558 PREDICTED: similar to hCG18094 [Homo sapiens]
          Length = 459

 Score = 26.9 bits (58), Expect = 7.9
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 44  GAGSSSVFSVLSNSAEVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQK 103
           GAG  S F       + K +R E +    C R+   L HE      + ++   K+ V Q+
Sbjct: 71  GAGDFSEFFEWQKKMQAK-DREEQLAASECRRLQGKLSHEEAVLARQSLMQENKQRVEQQ 129

Query: 104 MKYSIVSRNCEHFVTQLRYGKSRCKQVEK 132
            K  +     +    +LR  +SR + VE+
Sbjct: 130 -KEQMAKLMLQRAERRLREDRSRKELVEQ 157


>gi|169167297 PREDICTED: similar to hCG18094 [Homo sapiens]
          Length = 459

 Score = 26.9 bits (58), Expect = 7.9
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 44  GAGSSSVFSVLSNSAEVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQK 103
           GAG  S F       + K +R E +    C R+   L HE      + ++   K+ V Q+
Sbjct: 71  GAGDFSEFFEWQKKMQAK-DREEQLAASECRRLQGKLSHEEAVLARQSLMQENKQRVEQQ 129

Query: 104 MKYSIVSRNCEHFVTQLRYGKSRCKQVEK 132
            K  +     +    +LR  +SR + VE+
Sbjct: 130 -KEQMAKLMLQRAERRLREDRSRKELVEQ 157


>gi|169166473 PREDICTED: similar to hCG18094 [Homo sapiens]
          Length = 459

 Score = 26.9 bits (58), Expect = 7.9
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 44  GAGSSSVFSVLSNSAEVKRERLEDVVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQK 103
           GAG  S F       + K +R E +    C R+   L HE      + ++   K+ V Q+
Sbjct: 71  GAGDFSEFFEWQKKMQAK-DREEQLAASECRRLQGKLSHEEAVLARQSLMQENKQRVEQQ 129

Query: 104 MKYSIVSRNCEHFVTQLRYGKSRCKQVEK 132
            K  +     +    +LR  +SR + VE+
Sbjct: 130 -KEQMAKLMLQRAERRLREDRSRKELVEQ 157


>gi|212720861 tubulin tyrosine ligase-like family, member 11 a [Homo
           sapiens]
          Length = 800

 Score = 26.9 bits (58), Expect = 7.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 4   PHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFS 52
           P+QEP P +L  IF +   +++L I  G  IH    S+    GS   FS
Sbjct: 416 PYQEPTPKNLHRIF-MHLTNYSLNIHSGNFIH----SDSASTGSKRTFS 459


>gi|89363028 tubulin tyrosine ligase-like family, member 11 b [Homo
           sapiens]
          Length = 538

 Score = 26.9 bits (58), Expect = 7.9
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 4   PHQEPKPGDLIEIFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFS 52
           P+QEP P +L  IF +   +++L I  G  IH    S+    GS   FS
Sbjct: 416 PYQEPTPKNLHRIF-MHLTNYSLNIHSGNFIH----SDSASTGSKRTFS 459


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,397,320
Number of Sequences: 37866
Number of extensions: 266941
Number of successful extensions: 612
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 30
length of query: 164
length of database: 18,247,518
effective HSP length: 94
effective length of query: 70
effective length of database: 14,688,114
effective search space: 1028167980
effective search space used: 1028167980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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