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Search of human proteins with 149274648
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|149274648 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like
[Homo sapiens]
(1706 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|149274648 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like [Hom... 3442 0.0
gi|222831595 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 [Homo sap... 2233 0.0
gi|67782311 superkiller viralicidic activity 2-like homolog [Hom... 89 5e-17
gi|193211480 superkiller viralicidic activity 2-like 2 [Homo sap... 84 2e-15
gi|139394648 DNA polymerase theta [Homo sapiens] 71 1e-11
gi|110556640 DNA helicase HEL308 [Homo sapiens] 62 5e-09
gi|40217847 activating signal cointegrator 1 complex subunit 3-l... 58 9e-08
gi|76880486 activating signal cointegrator 1 complex subunit 3 i... 54 1e-06
gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD prote... 54 1e-06
gi|130484567 HFM1 protein [Homo sapiens] 50 2e-05
gi|149408122 RNA helicase LGP2 [Homo sapiens] 42 0.007
gi|49258196 syntaxin 19 [Homo sapiens] 39 0.056
gi|116812616 RecQ protein-like 4 [Homo sapiens] 37 0.16
gi|194353966 dynein, axonemal, heavy polypeptide 6 [Homo sapiens] 35 0.48
gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo ... 35 0.48
gi|144922720 coiled-coil domain containing 15 [Homo sapiens] 35 0.82
gi|51477718 TATA box binding protein-associated factor, RNA poly... 34 1.1
gi|45505178 cancer antigen 1 [Homo sapiens] 34 1.4
gi|131888281 hypothetical protein LOC55216 isoform b [Homo sapiens] 34 1.4
gi|131889432 hypothetical protein LOC55216 isoform a [Homo sapiens] 34 1.4
gi|131889391 hypothetical protein LOC55216 isoform a [Homo sapiens] 34 1.4
gi|116805340 glycyl-tRNA synthetase [Homo sapiens] 33 1.8
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo... 33 1.8
gi|14591902 RecQ protein-like [Homo sapiens] 33 1.8
gi|14591904 RecQ protein-like [Homo sapiens] 33 1.8
gi|37221175 PH domain and leucine rich repeat protein phosphatas... 33 3.1
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H... 33 3.1
gi|33946313 ninein isoform 4 [Homo sapiens] 33 3.1
gi|33946321 ninein isoform 5 [Homo sapiens] 33 3.1
gi|148536871 ninein isoform 1 [Homo sapiens] 33 3.1
>gi|149274648 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like [Homo
sapiens]
Length = 1706
Score = 3442 bits (8924), Expect = 0.0
Identities = 1706/1706 (100%), Positives = 1706/1706 (100%)
Query: 1 MGSKDHAVFFREMTQLILNEMPKAGYSSILNDFVESNFFVIDGDSLLVTCLGVKSFKWGQ 60
MGSKDHAVFFREMTQLILNEMPKAGYSSILNDFVESNFFVIDGDSLLVTCLGVKSFKWGQ
Sbjct: 1 MGSKDHAVFFREMTQLILNEMPKAGYSSILNDFVESNFFVIDGDSLLVTCLGVKSFKWGQ 60
Query: 61 NLHFFYLVECYLVDLLSNGGQFTIVFFKDAEYAYFDFPELLSLRTALILHLQHNTNIDVQ 120
NLHFFYLVECYLVDLLSNGGQFTIVFFKDAEYAYFDFPELLSLRTALILHLQHNTNIDVQ
Sbjct: 61 NLHFFYLVECYLVDLLSNGGQFTIVFFKDAEYAYFDFPELLSLRTALILHLQHNTNIDVQ 120
Query: 121 TEFSGCLSQDWKLFLEQHYPYFLIVSEEGLSDLQTYLFNFLIIHSWGMKVNVVLSSGHES 180
TEFSGCLSQDWKLFLEQHYPYFLIVSEEGLSDLQTYLFNFLIIHSWGMKVNVVLSSGHES
Sbjct: 121 TEFSGCLSQDWKLFLEQHYPYFLIVSEEGLSDLQTYLFNFLIIHSWGMKVNVVLSSGHES 180
Query: 181 DTLRFYAYTMESTDRNQTFSKENETVIQSAYKSLIQHLEEIRVLVLATHFEHLKWNDMME 240
DTLRFYAYTMESTDRNQTFSKENETVIQSAYKSLIQHLEEIRVLVLATHFEHLKWNDMME
Sbjct: 181 DTLRFYAYTMESTDRNQTFSKENETVIQSAYKSLIQHLEEIRVLVLATHFEHLKWNDMME 240
Query: 241 EAYQTLFLLQHLWSEGSDIQRVLCVTSCSLSLRMYHRVLVHSNCLSLQEVEDFCRLRCLC 300
EAYQTLFLLQHLWSEGSDIQRVLCVTSCSLSLRMYHRVLVHSNCLSLQEVEDFCRLRCLC
Sbjct: 241 EAYQTLFLLQHLWSEGSDIQRVLCVTSCSLSLRMYHRVLVHSNCLSLQEVEDFCRLRCLC 300
Query: 301 VAFQLHLPLSQRACSRVITCSWIRNSDSFLKMNKWCEYFILSNLNVFGCWNLNLNHVSDL 360
VAFQLHLPLSQRACSRVITCSWIRNSDSFLKMNKWCEYFILSNLNVFGCWNLNLNHVSDL
Sbjct: 301 VAFQLHLPLSQRACSRVITCSWIRNSDSFLKMNKWCEYFILSNLNVFGCWNLNLNHVSDL 360
Query: 361 YDEQLLKNIAFYYEFESTQEPHLNLGDSIRRDYEDLWNVVSHLVKEFNVGKSFPLRTTRR 420
YDEQLLKNIAFYYEFESTQEPHLNLGDSIRRDYEDLWNVVSHLVKEFNVGKSFPLRTTRR
Sbjct: 361 YDEQLLKNIAFYYEFESTQEPHLNLGDSIRRDYEDLWNVVSHLVKEFNVGKSFPLRTTRR 420
Query: 421 HFLRQEKSVIQEISLEKMPSVGFIPMTSAVIDEFVGDMMKDLPILKSDDPVVPSLFKQKT 480
HFLRQEKSVIQEISLEKMPSVGFIPMTSAVIDEFVGDMMKDLPILKSDDPVVPSLFKQKT
Sbjct: 421 HFLRQEKSVIQEISLEKMPSVGFIPMTSAVIDEFVGDMMKDLPILKSDDPVVPSLFKQKT 480
Query: 481 SDELLHWHAQRLLSDDYDRIKCHVDEQSRDPHVLDFLKKIQDYQQFYGKSLESISTKVIV 540
SDELLHWHAQRLLSDDYDRIKCHVDEQSRDPHVLDFLKKIQDYQQFYGKSLESISTKVIV
Sbjct: 481 SDELLHWHAQRLLSDDYDRIKCHVDEQSRDPHVLDFLKKIQDYQQFYGKSLESISTKVIV 540
Query: 541 TQTTRPKEDSSGASGEILQNTKPHQITKKSKKKSFLKEDQNKAQQNDDLLFSIEEEMKNN 600
TQTTRPKEDSSGASGEILQNTKPHQITKKSKKKSFLKEDQNKAQQNDDLLFSIEEEMKNN
Sbjct: 541 TQTTRPKEDSSGASGEILQNTKPHQITKKSKKKSFLKEDQNKAQQNDDLLFSIEEEMKNN 600
Query: 601 LHSGIRKLEDYLTSCASNSVKFGVEMLGLIACFKAWKKHCRGEGKISKDLSIAVQMMKRI 660
LHSGIRKLEDYLTSCASNSVKFGVEMLGLIACFKAWKKHCRGEGKISKDLSIAVQMMKRI
Sbjct: 601 LHSGIRKLEDYLTSCASNSVKFGVEMLGLIACFKAWKKHCRGEGKISKDLSIAVQMMKRI 660
Query: 661 HSLLERYPEILEAEHHQYIAKCLKYLGFNDLANSLDPTLIGDDKNKKKYSIDIGPARFQL 720
HSLLERYPEILEAEHHQYIAKCLKYLGFNDLANSLDPTLIGDDKNKKKYSIDIGPARFQL
Sbjct: 661 HSLLERYPEILEAEHHQYIAKCLKYLGFNDLANSLDPTLIGDDKNKKKYSIDIGPARFQL 720
Query: 721 QYMGHYLIRDERKDRDPRVQDFIPNAWQQELLDVVDKNESAVIVAPTSSGKTYASYYCME 780
QYMGHYLIRDERKDRDPRVQDFIPNAWQQELLDVVDKNESAVIVAPTSSGKTYASYYCME
Sbjct: 721 QYMGHYLIRDERKDRDPRVQDFIPNAWQQELLDVVDKNESAVIVAPTSSGKTYASYYCME 780
Query: 781 KVLRESDVGVVVYVAPAKSLVGQVAATVENRFTKTLPAGRTLCGAFTRDYCHNVLNCQVL 840
KVLRESDVGVVVYVAPAKSLVGQVAATVENRFTKTLPAGRTLCGAFTRDYCHNVLNCQVL
Sbjct: 781 KVLRESDVGVVVYVAPAKSLVGQVAATVENRFTKTLPAGRTLCGAFTRDYCHNVLNCQVL 840
Query: 841 ITVPECFEILLLAPHRQKWVERIRYVIFDEVHYLGREVGAKFWELLLVIIRCPFLVLSAT 900
ITVPECFEILLLAPHRQKWVERIRYVIFDEVHYLGREVGAKFWELLLVIIRCPFLVLSAT
Sbjct: 841 ITVPECFEILLLAPHRQKWVERIRYVIFDEVHYLGREVGAKFWELLLVIIRCPFLVLSAT 900
Query: 901 INNPNLLTKWLQSVKQYWKQADKIMEEKCISEKQADKCLNFLQDHSYKNQSYEVRLVLYG 960
INNPNLLTKWLQSVKQYWKQADKIMEEKCISEKQADKCLNFLQDHSYKNQSYEVRLVLYG
Sbjct: 901 INNPNLLTKWLQSVKQYWKQADKIMEEKCISEKQADKCLNFLQDHSYKNQSYEVRLVLYG 960
Query: 961 ERYNDLEKHICSVKHDDVYFDHFHPCAALTTDIIEKYGFPPDLTLTPQESIQLYDTMAQV 1020
ERYNDLEKHICSVKHDDVYFDHFHPCAALTTDIIEKYGFPPDLTLTPQESIQLYDTMAQV
Sbjct: 961 ERYNDLEKHICSVKHDDVYFDHFHPCAALTTDIIEKYGFPPDLTLTPQESIQLYDTMAQV 1020
Query: 1021 WETWPRAQELCPEEFILFKNKIVIKKLDARKYEENLKAELTNWIKNGQVKKVKRVLKNLS 1080
WETWPRAQELCPEEFILFKNKIVIKKLDARKYEENLKAELTNWIKNGQVKKVKRVLKNLS
Sbjct: 1021 WETWPRAQELCPEEFILFKNKIVIKKLDARKYEENLKAELTNWIKNGQVKKVKRVLKNLS 1080
Query: 1081 PDSLSSSKDMVKMFPLLVEKLRQMDKLPAIFFLFKNDDVGKRAGSVCTFLEKTETKSHPH 1140
PDSLSSSKDMVKMFPLLVEKLRQMDKLPAIFFLFKNDDVGKRAGSVCTFLEKTETKSHPH
Sbjct: 1081 PDSLSSSKDMVKMFPLLVEKLRQMDKLPAIFFLFKNDDVGKRAGSVCTFLEKTETKSHPH 1140
Query: 1141 TECHSYVFAIDEVLEKVRKTQKRITKKNPKKAEKLERKKVYRAEYINFLENLKILEISED 1200
TECHSYVFAIDEVLEKVRKTQKRITKKNPKKAEKLERKKVYRAEYINFLENLKILEISED
Sbjct: 1141 TECHSYVFAIDEVLEKVRKTQKRITKKNPKKAEKLERKKVYRAEYINFLENLKILEISED 1200
Query: 1201 CTYADVKALHTEITRNKDSTLERVLPRVRFTRHGKELKALAQRGIGYHHSSMYFKEKEFV 1260
CTYADVKALHTEITRNKDSTLERVLPRVRFTRHGKELKALAQRGIGYHHSSMYFKEKEFV
Sbjct: 1201 CTYADVKALHTEITRNKDSTLERVLPRVRFTRHGKELKALAQRGIGYHHSSMYFKEKEFV 1260
Query: 1261 EILFVKGLIRVVTATETLALGIHMPCKSVVFAQDSVYLDALNYRQMSGRAGRRGQDLLGN 1320
EILFVKGLIRVVTATETLALGIHMPCKSVVFAQDSVYLDALNYRQMSGRAGRRGQDLLGN
Sbjct: 1261 EILFVKGLIRVVTATETLALGIHMPCKSVVFAQDSVYLDALNYRQMSGRAGRRGQDLLGN 1320
Query: 1321 VYFFDIPLPKIKRLLASSVPELRGQFPLSITLVLRLMLLASKGDDPEDAKAKVLSVLKHS 1380
VYFFDIPLPKIKRLLASSVPELRGQFPLSITLVLRLMLLASKGDDPEDAKAKVLSVLKHS
Sbjct: 1321 VYFFDIPLPKIKRLLASSVPELRGQFPLSITLVLRLMLLASKGDDPEDAKAKVLSVLKHS 1380
Query: 1381 LLSFKRRRAMETLKLYFLFSLQLLIKEDYLNKKGNPKKFAGLASYLHGHEPSNLVFVNFL 1440
LLSFKRRRAMETLKLYFLFSLQLLIKEDYLNKKGNPKKFAGLASYLHGHEPSNLVFVNFL
Sbjct: 1381 LLSFKRRRAMETLKLYFLFSLQLLIKEDYLNKKGNPKKFAGLASYLHGHEPSNLVFVNFL 1440
Query: 1441 KRGLFHNLCKPAWKGSQQFSQDVMEKLVLVLANLFGRKYIPAKFQNANLSFSQSKVILAE 1500
KRGLFHNLCKPAWKGSQQFSQDVMEKLVLVLANLFGRKYIPAKFQNANLSFSQSKVILAE
Sbjct: 1441 KRGLFHNLCKPAWKGSQQFSQDVMEKLVLVLANLFGRKYIPAKFQNANLSFSQSKVILAE 1500
Query: 1501 LPEDFKAALYEYNLAVMKDFASFLLIASKSVNMKKEHQLPLSRIKFTGKECEDSQLVSHL 1560
LPEDFKAALYEYNLAVMKDFASFLLIASKSVNMKKEHQLPLSRIKFTGKECEDSQLVSHL
Sbjct: 1501 LPEDFKAALYEYNLAVMKDFASFLLIASKSVNMKKEHQLPLSRIKFTGKECEDSQLVSHL 1560
Query: 1561 MSCKKGRVAISPFVCLSGNTDNDLLRPETINQVILRTVGVSGTQAPLLWPWKLDNRGRRM 1620
MSCKKGRVAISPFVCLSGNTDNDLLRPETINQVILRTVGVSGTQAPLLWPWKLDNRGRRM
Sbjct: 1561 MSCKKGRVAISPFVCLSGNTDNDLLRPETINQVILRTVGVSGTQAPLLWPWKLDNRGRRM 1620
Query: 1621 PLNAYVLNFYKHNCLTRLDQKNGMRMGQLLKCLKDFAFNIQAISDSLSELCENKRDNVVL 1680
PLNAYVLNFYKHNCLTRLDQKNGMRMGQLLKCLKDFAFNIQAISDSLSELCENKRDNVVL
Sbjct: 1621 PLNAYVLNFYKHNCLTRLDQKNGMRMGQLLKCLKDFAFNIQAISDSLSELCENKRDNVVL 1680
Query: 1681 AFKQLSQTFYEKLQEMQIQMSQNHLE 1706
AFKQLSQTFYEKLQEMQIQMSQNHLE
Sbjct: 1681 AFKQLSQTFYEKLQEMQIQMSQNHLE 1706
>gi|222831595 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 [Homo sapiens]
Length = 1712
Score = 2233 bits (5786), Expect = 0.0
Identities = 1130/1713 (65%), Positives = 1360/1713 (79%), Gaps = 34/1713 (1%)
Query: 9 FFREMTQLILNEMPKAGYSSILNDFVESNFFVIDGDSLLVTCLGVKSFKWGQNLHFFYLV 68
F +EM+QLILNEMPKA YSS+ NDFVES FF+IDGDSLL+TC+ SFK GQNLHFFYLV
Sbjct: 9 FSQEMSQLILNEMPKAEYSSLFNDFVESEFFLIDGDSLLITCICEISFKPGQNLHFFYLV 68
Query: 69 ECYLVDLLSNGGQFTIVFFKDAEYAYFDFPELLSLRTALILHLQHNTNIDVQTEFSGCLS 128
E YLVDL+S GGQFTIVFFKDAEYAYF+FPELLSLRTALILHLQ NT IDV+T FS CLS
Sbjct: 69 ERYLVDLISKGGQFTIVFFKDAEYAYFNFPELLSLRTALILHLQKNTTIDVRTTFSRCLS 128
Query: 129 QDWKLFLEQHYPYFLIVSEEGLSDLQTYLFNFLIIHSWGMKVNVVLSSGHESDTLRFYAY 188
++W FLE+ YPYFLIV++EGL+DLQT LFNFLIIHSW KVNVVLSSG ESD L YAY
Sbjct: 129 KEWGSFLEESYPYFLIVADEGLNDLQTQLFNFLIIHSWARKVNVVLSSGQESDVLCLYAY 188
Query: 189 TMESTDRNQTFSKENETVIQSAYKSLIQHLEEIRVLVLATHFEHLKWNDMMEEAYQTLFL 248
+ S R+Q FS +N+ I+ AY +L+ LE ++ LA F LKWN++ EEA++T+ L
Sbjct: 189 LLPSMYRHQIFSWKNKQNIKDAYTTLLNQLERFKLSALAPLFGSLKWNNITEEAHKTVSL 248
Query: 249 LQHLWSEGSDIQRVLCVTSCSLSLRMYHRVL---------------VHSNCLSLQEVEDF 293
L +W EGSDI+RV CVTSCSLSLRMYHR L V+SNCL+LQE+ED
Sbjct: 249 LTQVWPEGSDIRRVFCVTSCSLSLRMYHRFLGNREPSSGQETEIQQVNSNCLTLQEMEDL 308
Query: 294 CRLRCLCVAFQLHLPLSQRACSRVITCSWIRNSDSFLKMNKWCEYFILSNLNVFGCWNLN 353
C+L CL V F LHLPLSQRAC+RVIT W + L+M KWCEYFIL N++ F WNLN
Sbjct: 309 CKLHCLTVVFLLHLPLSQRACARVITSHWAEDMKPLLQMKKWCEYFILRNIHTFEFWNLN 368
Query: 354 LNHVSDLYDEQLLKNIAFYYEFESTQEPHLNLGDSIRRDYEDLWNVVSHLVKEFNVGKSF 413
L H+SDL DE LLKNIAFYYE E+ + HLNLGD+I +DYE LWN VS LV++F VG+ F
Sbjct: 369 LIHLSDLNDELLLKNIAFYYENENVKGLHLNLGDTIMKDYEYLWNTVSKLVRDFEVGQPF 428
Query: 414 PLRTTRRHFLRQEKSVIQEISLEKMPSVGFIPMTSAVIDEFVGDMMKDLPILKSDDPVVP 473
PLRTT+ FL ++ S I++ S E +P++GFIP +S V+D+F GD++KDLP LKSDDP+V
Sbjct: 429 PLRTTKVCFLEKKPSPIKDSSNEMVPNLGFIPTSSFVVDKFAGDILKDLPFLKSDDPIVT 488
Query: 474 SLFKQKTSDELLHWHAQRLLSDDYDRIKCHVDEQSRDPHVLDFLKKIQDYQQFYGKSLES 533
SL KQK DEL+HWH+ + LSDDYDR +C DE+SRDP VL ++K +Q+FYG SLE+
Sbjct: 489 SLVKQKEFDELVHWHSHKPLSDDYDRSRCQFDEKSRDPRVLRSVQKYHVFQRFYGNSLET 548
Query: 534 ISTKVIVTQTTRPKEDSSGASGEILQNTKPHQITKKSKKKSFLKEDQNKAQQNDDLLFSI 593
+S+K+IVTQT + K+D SG + TK I +++KK+ F +E+Q + Q+ + L FSI
Sbjct: 549 VSSKIIVTQTIKSKKDFSGPKSKKAHETKAEIIARENKKRLFAREEQKEEQKWNALSFSI 608
Query: 594 EEEMKNNLHSGIRKLEDYLTSCASNSVKFGVEMLGLIACFKAWKKHCRGE-GKISKDLSI 652
EE++K NLHSGI+ LED+L SC S+ VK VEM+GL AC KAWK+HCR E GK +KDLSI
Sbjct: 609 EEQLKENLHSGIKSLEDFLKSCKSSCVKLQVEMVGLTACLKAWKEHCRSEEGKTTKDLSI 668
Query: 653 AVQMMKRIHSLLERYPEILEAEHHQYIAKCLKYLGFNDLANSLDPTLIGDD----KNKKK 708
AVQ+MKRIHSL+E+Y E+L+ + Q IA+CLKYLGF++LA+SL P ++ K + K
Sbjct: 669 AVQVMKRIHSLMEKYSELLQEDDRQLIARCLKYLGFDELASSLHPAQDAENDVKVKKRNK 728
Query: 709 YSIDIGPARFQLQYMGHYLIRDERKDRDPRVQDFIPNAWQQELLDVVDKNESAVIVAPTS 768
YS+ IGPARFQLQYMGHYLIRDERKD DPRVQDFIP+ WQ+ELLDVVDKNESAVIVAPTS
Sbjct: 729 YSVGIGPARFQLQYMGHYLIRDERKDPDPRVQDFIPDTWQRELLDVVDKNESAVIVAPTS 788
Query: 769 SGKTYASYYCMEKVLRESDVGVVVYVAPAKSLVGQVAATVENRFTKTLPAGRTLCGAFTR 828
SGKTYASYYCMEKVL+ESD GVVVYVAP K+LV QVAATV+NRFTK LP+G LCG FTR
Sbjct: 789 SGKTYASYYCMEKVLKESDDGVVVYVAPTKALVNQVAATVQNRFTKNLPSGEVLCGVFTR 848
Query: 829 DYCHNVLNCQVLITVPECFEILLLAPHRQKWVERIRYVIFDEVHYLGREVGAKFWELLLV 888
+Y H+ LNCQVLITVP CFEILLLAPHRQ WV++IRYVIFDEVH LG E+GA+ WE LLV
Sbjct: 849 EYRHDALNCQVLITVPACFEILLLAPHRQNWVKKIRYVIFDEVHCLGGEIGAEIWEHLLV 908
Query: 889 IIRCPFLVLSATINNPNLLTKWLQSVKQYWKQADKIMEEKCISEKQADKCLNFLQDHSYK 948
+IRCPFL LSATI+NP LT+WLQSVK YWKQ DKI+E S++ + F +D+
Sbjct: 909 MIRCPFLALSATISNPEHLTEWLQSVKWYWKQEDKIIENNTASKRHVGRQAGFPKDYLQV 968
Query: 949 NQSYEVRLVLYGERYNDLEKHICSVKHDDVYFDHFHPCAALTTDIIEKYGFPPDLTLTPQ 1008
QSY+VRLVLYGERYNDLEKH+CS+KH D++FDHFHPCAALTTD IE+YGFPPDLTL+P+
Sbjct: 969 KQSYKVRLVLYGERYNDLEKHVCSIKHGDIHFDHFHPCAALTTDHIERYGFPPDLTLSPR 1028
Query: 1009 ESIQLYDTMAQVWETWPRAQELCPEEFILFKNKIVIKKLDARKYEENLKAELTNWIKNGQ 1068
ESIQLYD M Q+W++WPRAQELCPE FI F NK+VIKK+DARKYEE+LKAELT+WIKNG
Sbjct: 1029 ESIQLYDAMFQIWKSWPRAQELCPENFIHFNNKLVIKKMDARKYEESLKAELTSWIKNGN 1088
Query: 1069 VKKVKRVLKNLSPDSLSSSKDMVKMFPLLVEKLRQMDKLPAIFFLFKNDDVGKRAGSVCT 1128
V++ + VL+NLSP++ S ++M+ MFPLLVEKLR+M+KLPA+FFLFK V A SV T
Sbjct: 1089 VEQARMVLQNLSPEADLSPENMITMFPLLVEKLRKMEKLPALFFLFKLGAVENAAESVST 1148
Query: 1129 FLEKT-ETKSHPHTECHSYVFAIDEVLEKVRKT---QKRITKKNPKKAEKLERKKVYRAE 1184
FL+K ETK P + ++V A L KV+K+ QK I +K+ KK +++ ++ AE
Sbjct: 1149 FLKKKQETKRPPKADKEAHVMA--NKLRKVKKSIEKQKIIDEKSQKKTRNVDQSLIHEAE 1206
Query: 1185 YINFLENL-KILEISEDCTYADVKALHTEITRNKDSTLERVLPRVRFTRHGKELKALAQR 1243
+ N ++ L K LEI +DCTYAD KA+ TE TL++V RV+F R G+ELKALA+R
Sbjct: 1207 HDNLVKCLEKNLEIPQDCTYADQKAVDTE-------TLQKVFGRVKFERKGEELKALAER 1259
Query: 1244 GIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVFAQDSVYLDALNY 1303
GIGYHHS+M FKEK+ VEILF KG +RVVTAT TLALG++MPCKSVVFAQ+SVYLDALNY
Sbjct: 1260 GIGYHHSAMSFKEKQLVEILFRKGYLRVVTATGTLALGVNMPCKSVVFAQNSVYLDALNY 1319
Query: 1304 RQMSGRAGRRGQDLLGNVYFFDIPLPKIKRLLASSVPELRGQFPLSITLVLRLMLLASKG 1363
RQMSGRAGRRGQDL+G+VYFFDIP PKI +L+ S+VPELRG FPLSITLVLRLMLLASKG
Sbjct: 1320 RQMSGRAGRRGQDLMGDVYFFDIPFPKIGKLIKSNVPELRGHFPLSITLVLRLMLLASKG 1379
Query: 1364 DDPEDAKAKVLSVLKHSLLSFKRRRAMETLKLYFLFSLQLLIKEDYLNKKGNPKKFAGLA 1423
DDPEDAKAKVLSVLKHSLLSFK+ R M+ LKLYFLFSLQ L+KE YL+++GNP FAGL
Sbjct: 1380 DDPEDAKAKVLSVLKHSLLSFKQPRVMDMLKLYFLFSLQFLVKEGYLDQEGNPMGFAGLV 1439
Query: 1424 SYLHGHEPSNLVFVNFLKRGLFHNLCKPAWKGSQQFSQDVMEKLVLVLANLFGRKYIPAK 1483
S+LH HEPSNLVFV+FL GLFH+LC+P KGS+ FSQDVMEKLVLVLA+LFGR+Y P K
Sbjct: 1440 SHLHYHEPSNLVFVSFLVNGLFHDLCQPTRKGSKHFSQDVMEKLVLVLAHLFGRRYFPPK 1499
Query: 1484 FQNANLSFSQSKVILAELPEDFKAALYEYNLAVMKDFASFLLIASKSVNMKKEHQLPLSR 1543
FQ+A+ F QSKV L +LPEDF AL EYN+ +M+DF +FL I SK +M +E+QLPLS+
Sbjct: 1500 FQDAHFEFYQSKVFLDDLPEDFSDALDEYNMKIMEDFTTFLRIVSKLADMNQEYQLPLSK 1559
Query: 1544 IKFTGKECEDSQLVSHLMSCKKGRVAISPFVCLSGNTDNDLLRPETINQVILRTVGVSGT 1603
IKFTGKECEDSQLVSHLMSCK+GRVAISPFVCLSGN D+DLLR ET N V L T+GV+ +
Sbjct: 1560 IKFTGKECEDSQLVSHLMSCKEGRVAISPFVCLSGNFDDDLLRLETPNHVTLGTIGVNRS 1619
Query: 1604 QAPLLWPWKLDNRGRRMPLNAYVLNFYKHNCLTRLDQKNGMRMGQLLKCLKDFAFNIQAI 1663
QAP+L K DNRGR+M LNAY L+FYKH L L Q N M G LKDFA I++I
Sbjct: 1620 QAPVLLSQKFDNRGRKMSLNAYALDFYKHGSLIGLVQDNRMNEGDAYYLLKDFALTIKSI 1679
Query: 1664 SDSLSELCENKRDNVVLAFKQLSQTFYEKLQEM 1696
S SL ELCEN+ DNVVLAF+QLS TF+EKL ++
Sbjct: 1680 SVSLRELCENEDDNVVLAFEQLSTTFWEKLNKV 1712
>gi|67782311 superkiller viralicidic activity 2-like homolog [Homo
sapiens]
Length = 1246
Score = 88.6 bits (218), Expect = 5e-17
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 26/178 (14%)
Query: 1222 ERVLPRVRFTRHGKELKALAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALG 1281
+R LP+V + L RG+G HHS + KE VE+LF +GL++V+ ATET A+G
Sbjct: 615 DRQLPQVL------HMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMG 668
Query: 1282 IHMPCKSVVF-----AQDSVYLDAL--NYRQMSGRAGRRGQDLLGNVYFF---DIP-LPK 1330
++MP ++VVF S + D L Y QM+GRAGRRG D G V +P +
Sbjct: 669 VNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEMAD 728
Query: 1331 IKRLLASSVPELRGQFPLSITLVLRLMLLASKGDDPEDAKAKVLSVLKHSLLSFKRRR 1388
+ R++ +L+ QF L+ T++L L+ + + +V ++K S F R+
Sbjct: 729 LHRMMMGKPSQLQSQFRLTYTMILNLLRVDA---------LRVEDMMKRSFSEFPSRK 777
Score = 59.7 bits (143), Expect = 2e-08
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 742 FIPNAWQQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLRESDVGVVVYVAPAKSLV 801
F P+ +Q++ + +++++S + A TS+GKT + Y + L + + +Y +P K+L
Sbjct: 309 FEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAI--ALAQKHMTRTIYTSPIKALS 366
Query: 802 GQVAATVENRFTKTLPAGRTLCGAFTRDY-CHNVLNCQVLITVPECFEILLLAPHRQKWV 860
Q N F G T D H +C ++ T EIL + V
Sbjct: 367 NQKFRDFRNTFGDV--------GLLTGDVQLHPEASCLIMTT-----EILRSMLYSGSDV 413
Query: 861 ER-IRYVIFDEVHYLGREVGAKFWELLLVII--RCPFLVLSATINNPNLLTKWLQSVKQ 916
R + +VIFDEVHY+ WE +L+++ ++LSAT+ N W+ +K+
Sbjct: 414 IRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKR 472
>gi|193211480 superkiller viralicidic activity 2-like 2 [Homo sapiens]
Length = 1042
Score = 83.6 bits (205), Expect = 2e-15
Identities = 54/128 (42%), Positives = 74/128 (57%), Gaps = 10/128 (7%)
Query: 1240 LAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVF-------A 1292
L +RGIG HH + KE +EILF +GLI+ + ATET A+GI+MP ++V+F
Sbjct: 447 LLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDG 506
Query: 1293 QDSVYLDALNYRQMSGRAGRRGQDLLGNVYFF--DIPLPKI-KRLLASSVPELRGQFPLS 1349
+D ++ + Y QMSGRAGRRG D G V + P I K+LL S L F L+
Sbjct: 507 KDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLT 566
Query: 1350 ITLVLRLM 1357
+VL L+
Sbjct: 567 YNMVLNLL 574
Score = 72.4 bits (176), Expect = 4e-12
Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 19/190 (10%)
Query: 726 YLIRDERKDRDPRVQDFIPNAWQQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLRE 785
YL R + + FI +A+Q+E + VD N+S ++ A TS+GKT + Y + LRE
Sbjct: 122 YLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALRE 181
Query: 786 SDVGVVVYVAPAKSLVGQVAATVENRFTKTLPAGRTLCGAFTRDYCHN-VLNCQVLITVP 844
V++ +P K+L Q + F G T D N +C V+ T
Sbjct: 182 KQ--RVIFTSPIKALSNQKYREMYEEFQDV--------GLMTGDVTINPTASCLVMTT-- 229
Query: 845 ECFEILLLAPHRQKWVER-IRYVIFDEVHYLGREVGAKFWELLLVII--RCPFLVLSATI 901
EIL +R V R + +VIFDE+HY+ WE ++++ ++ LSATI
Sbjct: 230 ---EILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATI 286
Query: 902 NNPNLLTKWL 911
N +W+
Sbjct: 287 PNARQFAEWI 296
>gi|139394648 DNA polymerase theta [Homo sapiens]
Length = 2590
Score = 70.9 bits (172), Expect = 1e-11
Identities = 33/80 (41%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 1244 GIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVFAQDSVY----LD 1299
G+ +HH+ + F+E++ +E F +GLIRV+ AT TL+ G+++P + V+ + ++ LD
Sbjct: 412 GVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVII-RTPIFGGRPLD 470
Query: 1300 ALNYRQMSGRAGRRGQDLLG 1319
L Y+QM GRAGR+G D +G
Sbjct: 471 ILTYKQMVGRAGRKGVDTVG 490
Score = 33.5 bits (75), Expect = 1.8
Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 58/269 (21%)
Query: 747 WQQE--LLDVVDKNESAVIVAPTSSGKT-YASYYCMEKVL--RESDVGVVVYVAPAK--- 798
WQ E LL V + ++ V APTS+GKT A +++VL R+ + ++ +V+ AK
Sbjct: 95 WQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKK 154
Query: 799 ----SLVGQVAATVENRFTKTLPAGRTLCGAFTRDYCHNVLNCQVLITVPECFEILLLAP 854
SL +V V+ T P+ + + + + E L+
Sbjct: 155 YYLQSLFQEVGIKVDGYMGSTSPS-------------RHFSSLDIAVCTIERANGLINRL 201
Query: 855 HRQKWVERIRYVIFDEVHYLGREVGAKFWELLLVII--------------------RCPF 894
+ ++ + V+ DE+H LG ELLL I
Sbjct: 202 IEENKMDLLGMVVVDELHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQI 261
Query: 895 LVLSATINNPNLLTKWLQSVKQYWKQADKIMEEKCISEKQADKCLNFLQDHSYK-NQSYE 953
+ +SAT+ N L+ WL + + + + + ++ K N + D S K + +E
Sbjct: 262 VGMSATLPNLELVASWLNAELYH-------TDFRPVPLLESVKVGNSIYDSSMKLVREFE 314
Query: 954 VRLVLYGERYNDLEKHICSVKHDDVYFDH 982
L + G+ E H+ S+ ++ + +H
Sbjct: 315 PMLQVKGD-----EDHVVSLCYETICDNH 338
>gi|110556640 DNA helicase HEL308 [Homo sapiens]
Length = 1101
Score = 62.0 bits (149), Expect = 5e-09
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 1207 KALHTEITRNKDSTLERVLPRVRFTRHGK---ELKALAQRGIGYHHSSMYFKEKEFVEIL 1263
K L E ++K+ V+ ++ +G LK G+ YHHS + E++ +E
Sbjct: 599 KFLSKEYLKHKEKEKCEVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEA 658
Query: 1264 FVKGLIRVVTATETLALGIHMPCKSVVFAQDSV---YLDALNYRQMSGRAGRRGQDLLG 1319
+ G++ + T T TLA G+++P + V+ V +L Y+QM GRAGR G D +G
Sbjct: 659 YSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAKEFLKRNQYKQMIGRAGRAGIDTIG 717
>gi|40217847 activating signal cointegrator 1 complex subunit 3-like 1
[Homo sapiens]
Length = 2136
Score = 57.8 bits (138), Expect = 9e-08
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 8/168 (4%)
Query: 740 QDFIP--NAWQQELLDVVDKNESAVIV-APTSSGKTYASYYCMEKVLRESDVGVVVYVAP 796
QD P N Q ++ + V ++ V V APT SGKT + + + ++L +S G VY+ P
Sbjct: 1322 QDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITP 1381
Query: 797 AKSLVGQVAATVENRFTKTLPAGRTLCGAFTRDYCHNVLNCQVLITVPECFEILLLAPHR 856
++L QV +F L L T + ++I+ PE ++IL +
Sbjct: 1382 MEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ 1441
Query: 857 QKWVERIRYVIFDEVHYLGREVGAKFWELLLVIIRCPFLVLSATINNP 904
+K V+ I + DEVH +G E G +L +I +S+ I P
Sbjct: 1442 RKNVQNINLFVVDEVHLIGGENGP-----VLEVICSRMRYISSQIERP 1484
Score = 55.1 bits (131), Expect = 6e-07
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 1236 ELKALAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVFAQDS 1295
ELK L G HH+ M ++ VE LF I+V+ +T TLA G+++P +V+
Sbjct: 773 ELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQ 832
Query: 1296 VY---------LDALNYRQMSGRAGRRGQDLLG 1319
VY L AL+ QM GRAGR D G
Sbjct: 833 VYSPEKGRWTELGALDILQMLGRAGRPQYDTKG 865
Score = 50.8 bits (120), Expect = 1e-05
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 16/149 (10%)
Query: 755 VDKNESAVIVAPTSSGKTYASYYCM-----EKVLRESDVGV----VVYVAPAKSLVGQVA 805
++ +E+ ++ APT +GKT + CM + + + + V ++Y+AP +SLV ++
Sbjct: 493 LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMV 552
Query: 806 ATVENRFTKTLPAGRTLCGAFTRDY--CHNVLNC-QVLITVPECFEILLLAPHRQKWVER 862
+ F K L T D+ C ++ Q+++ PE ++I+ + + +
Sbjct: 553 GS----FGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQL 608
Query: 863 IRYVIFDEVHYLGREVGAKFWELLLVIIR 891
+R +I DE+H L + G L+ IR
Sbjct: 609 VRLIILDEIHLLHDDRGPVLEALVARAIR 637
Score = 40.0 bits (92), Expect = 0.019
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 1237 LKALAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVFAQDSV 1296
LK G+GY H + E+ VE LF G I+VV A+ +L G+++ V+
Sbjct: 1609 LKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQY 1668
Query: 1297 YLDAL---------NYRQMSGRAGRRGQD 1316
Y + + QM G A R QD
Sbjct: 1669 YNGKIHAYVDYPIYDVLQMVGHANRPLQD 1697
>gi|76880486 activating signal cointegrator 1 complex subunit 3
isoform a [Homo sapiens]
Length = 2202
Score = 54.3 bits (129), Expect = 1e-06
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 1235 KELKALAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVFAQD 1294
K+++ L G HH+ M +++ VE LF G I+V+ T TLA G+++P +V+
Sbjct: 769 KQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGT 828
Query: 1295 SVY---------LDALNYRQMSGRAGRRGQDLLG 1319
+Y L L+ Q+ GRAGR D G
Sbjct: 829 QIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFG 862
Score = 53.9 bits (128), Expect = 1e-06
Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 21/171 (12%)
Query: 760 SAVIVAPTSSGKTYASYYCMEKVLRESDVGVVVYVAPAKSLVGQVAATVENRFTKTLPAG 819
+ ++ APT SGKT A+ + +V + VY+AP K+LV + + R + L G
Sbjct: 1344 NVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKL--G 1401
Query: 820 R---TLCGAFTRDYCHNVLNCQVLITVPECFEILLLAPHRQKWVERIRYVIFDEVHYLGR 876
+ L G T D ++ +++T PE ++ + + + +V+++ +I DE+H LG
Sbjct: 1402 KKVIELTGDVTPD-MKSIAKADLIVTTPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGE 1460
Query: 877 EVGAKFWELLLVIIRCPFLV-----------LSATINNPNLLTKWLQSVKQ 916
E G L +++ R F+ LS + N L WL ++KQ
Sbjct: 1461 ERGP---VLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWL-NIKQ 1507
Score = 53.9 bits (128), Expect = 1e-06
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 1222 ERVLPRVRFTRHGKELKALAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALG 1281
ER + + T LK GIG HH+ ++ ++++ VE LFV ++V+ AT TLA G
Sbjct: 1593 EREMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWG 1652
Query: 1282 IHMPCKSVVFAQDSVYLDALNYR----------QMSGRAGRRGQDLLGN--VYFFDIPLP 1329
++ P V+ + + Y D R QM GRAGR D G + DI
Sbjct: 1653 VNFPAHLVII-KGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKD 1711
Query: 1330 KIKRLLASSVP 1340
K+ L P
Sbjct: 1712 FYKKFLYEPFP 1722
Score = 45.1 bits (105), Expect = 6e-04
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 24/166 (14%)
Query: 758 NESAVIVAPTSSGKT-YASYYCMEKVLRESDVGV-------VVYVAPAKSLVGQVAATVE 809
NE+ +I APT +GKT A + ++ + GV +VYVAP K+L AA +
Sbjct: 492 NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKAL----AAEMT 547
Query: 810 NRFTKTLPAGRTLCGAFTRDY---CHNVLNCQVLITVPECFEILLLAPHRQKWVERI-RY 865
+ F++ L + T D +L Q+L+T PE ++++ + +I R
Sbjct: 548 DYFSRRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRL 607
Query: 866 VIFDEVHYLGREVGAKFWELLLVIIR--------CPFLVLSATINN 903
+I DEVH L + G ++ +R L LSAT+ N
Sbjct: 608 LILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPN 653
>gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD protein,
partial [Homo sapiens]
Length = 1700
Score = 53.9 bits (128), Expect = 1e-06
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 1236 ELKALAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVFAQDS 1295
ELK L G HH+ M ++ VE LF I+V+ +T TLA G+++P +V+
Sbjct: 337 ELKDLLPYGFAIHHAGMTRVDRTLVEDLFGDKHIQVLVSTATLAWGVNLPAHTVIIKGTQ 396
Query: 1296 VY---------LDALNYRQMSGRAGRRGQDLLG 1319
VY L AL+ QM GRAGR D G
Sbjct: 397 VYSPEKGRWTELGALDILQMLGRAGRPQYDTKG 429
Score = 52.8 bits (125), Expect = 3e-06
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 740 QDFIP--NAWQQELLDVVDKNESAVIV-APTSSGKTYASYYCMEKVLRESDVGVVVYVAP 796
QD P N Q ++ + V ++ V V APT SGKT + + + ++L ++ G VY+ P
Sbjct: 886 QDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITP 945
Query: 797 AKSLVGQVAATVENRFTKTLPAGRTLCGAFTRDYCHNVLNCQVLITVPECFEILLLAPHR 856
+ QV +F L L T + ++I+ PE ++IL +
Sbjct: 946 MRLWQEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ 1005
Query: 857 QKWVERIRYVIFDEVHYLGREVGAKFWELLLVIIRCPFLVLSATINNP 904
+K V+ I + DEVH +G E G +L +I +S+ I P
Sbjct: 1006 RKNVQNINLFVVDEVHLIGGENGP-----VLEVICSRMRYISSQIERP 1048
Score = 50.4 bits (119), Expect = 1e-05
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 16/149 (10%)
Query: 755 VDKNESAVIVAPTSSGKTYASYYCM-----EKVLRESDVGV----VVYVAPAKSLVGQVA 805
++ +E+ ++ APT +GKT + CM + + + + V ++Y+AP +SLV ++
Sbjct: 57 LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMV 116
Query: 806 ATVENRFTKTLPAGRTLCGAFTRDY--CHNVLNC-QVLITVPECFEILLLAPHRQKWVER 862
+ F K L T D+ C ++ Q+++ PE ++I+ + + +
Sbjct: 117 GS----FGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQL 172
Query: 863 IRYVIFDEVHYLGREVGAKFWELLLVIIR 891
+R ++ DE+H L + G L+ IR
Sbjct: 173 VRLIVLDEIHLLHDDRGPVLEALVARAIR 201
Score = 40.0 bits (92), Expect = 0.019
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 1237 LKALAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMPCKSVVFAQDSV 1296
LK G+GY H + E+ VE LF G I+VV A+ +L G+++ V+ D++
Sbjct: 1173 LKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVII-MDTL 1231
Query: 1297 YLDA----------LNYRQMSGRAGRRGQD 1316
Y + + QM G A R QD
Sbjct: 1232 YYNGKIHAYVDYPIYDVLQMVGHANRPLQD 1261
>gi|130484567 HFM1 protein [Homo sapiens]
Length = 1435
Score = 50.1 bits (118), Expect = 2e-05
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 1225 LPRVRFTRHGKELKALAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHM 1284
L + ++ +L+ + + G YHH+ M +++ VE F G + V+ T TLA+G+++
Sbjct: 563 LQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNL 622
Query: 1285 PCKSVVFAQDSVYLDAL-------NYRQMSGRAGR 1312
P VV Y L + QM GRAGR
Sbjct: 623 PAHLVVIKSTMHYAGGLFEEYSETDILQMIGRAGR 657
Score = 49.7 bits (117), Expect = 2e-05
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 753 DVVDKNESAVIVAPTSSGKTYASYYCMEKVLRESDVG----VVVYVAPAKSLVGQVAATV 808
D++ + + VI APT SGKT + ++L E + +VY+AP K+L Q
Sbjct: 291 DLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDW 350
Query: 809 ENRFTKTLPAGRTLCGAFTRDYCHNVLNCQVLITVPECFEILLLAPHRQKWVERIRYVIF 868
+ +F + L G D + + +++T PE ++ + V+ +R +
Sbjct: 351 KEKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLI 410
Query: 869 DEVHYLGREVGAKFWELLL-----------------VIIRCPFLVLSATINNPNLLTKWL 911
DEVH + E E+++ I F+ +SATI N + +WL
Sbjct: 411 DEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWL 470
>gi|149408122 RNA helicase LGP2 [Homo sapiens]
Length = 678
Score = 41.6 bits (96), Expect = 0.007
Identities = 58/247 (23%), Positives = 104/247 (42%), Gaps = 25/247 (10%)
Query: 746 AWQQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLRESDVGVVVYVAPAKSLVGQ-- 803
++Q E++ + ++ +I PT +GKT A+ Y ++ L D VV + LV Q
Sbjct: 5 SYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLVTQHG 64
Query: 804 --VAATVENRFTKTLPAG----RTLCGAFTRDYCHNVLNCQVLITVPECFEILLLAPHRQ 857
++ R+T T +G R G R CH++L C E ++ L +P +
Sbjct: 65 EEFRRMLDGRWTVTTLSGDMGPRAGFGHLAR--CHDLLIC-----TAELLQMALTSPEEE 117
Query: 858 KWVERIRY--VIFDEVHYLGRE-----VGAKFWELLLVIIRCPFLVLSATINNPNLLTKW 910
+ VE + ++ DE H+ ++ + +++ EL L + VL T +
Sbjct: 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASK 177
Query: 911 LQSVKQYWKQADKIMEEKCISEKQADKCLNFLQDHSYKN-QSYEVRLVLYGERYNDLEKH 969
L + Q ++ CI Q C LQ+HS + + Y + + + DL K
Sbjct: 178 LDGAINHVLQLCANLDTWCIMSPQ--NCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK 235
Query: 970 ICSVKHD 976
+ HD
Sbjct: 236 LMDQIHD 242
>gi|49258196 syntaxin 19 [Homo sapiens]
Length = 294
Score = 38.5 bits (88), Expect = 0.056
Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 556 EILQNTKPHQITKKSKKKSFLKEDQNKAQQNDDLLFSIEEEMKNNLHSGIRKLEDYLTSC 615
E+ Q TK ++++ S + E+Q Q +++ E + +LH I+KL++ + +
Sbjct: 7 ELKQRTKEIELSRDSHVSTTETEEQGVFLQQA-VIYEREPVAERHLHE-IQKLQESINNL 64
Query: 616 ASNSVKFGVEMLGLIACFKAWKKHCRGEGKISKDLSIAVQMMKRIHSLLERYPEILEAE 674
A N KFG + L+A + + + E I+K++ I + + R SL + E+ ++E
Sbjct: 65 ADNVQKFGQQQKSLVASMRRFSL-LKRESTITKEIKIQAEYINR--SLNDLVKEVKKSE 120
>gi|116812616 RecQ protein-like 4 [Homo sapiens]
Length = 1208
Score = 37.0 bits (84), Expect = 0.16
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 1216 NKDSTLERVLPRVRFTRH--------GKELKALAQRGIGYHHSSMYFKEKEFVEILFVKG 1267
N+ ER+ +R H G+ K A+ +H+ M +E+ V+ F++G
Sbjct: 708 NRREDTERIAALLRTCLHAAWVPGSGGRAPKTTAEA----YHAGMCSRERRRVQRAFMQG 763
Query: 1268 LIRVVTATETLALGIHMPCKSVVFAQDSVYLDALNYRQMSGRAGRRGQ 1315
+RVV AT +G+ P V + +Y Q GRAGR GQ
Sbjct: 764 QLRVVVATVAFGMGLDRPDVRAVL-HLGLPPSFESYVQAVGRAGRDGQ 810
>gi|194353966 dynein, axonemal, heavy polypeptide 6 [Homo sapiens]
Length = 4158
Score = 35.4 bits (80), Expect = 0.48
Identities = 33/167 (19%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 919 KQADKIMEEKCISEKQADKCLNFLQ-DHSYKNQSYEVRLVLYGERYNDLEKHICSVKHDD 977
+ + +ME+ + ++ AD+ N +Q D + E + + DL++ + ++ +
Sbjct: 2725 EDVEALMEKLAVDQESADQVRNTVQEDEATAKVKAEETQAIADDAQRDLDEALPALDAAN 2784
Query: 978 VYFDHFHPCAALTTDIIEKYGFPPDLTLTPQESIQLYDTMAQVWETWPRAQELCPEEFIL 1037
D + K PPDL +T E+I + + WP A++L + L
Sbjct: 2785 KALDSLDKADISEIRVFTK---PPDLVMTVMEAISI---LLNAKPDWPSAKQLLGDSNFL 2838
Query: 1038 FKNKIVIKKLDARKYEENLKAELTNWIKN-----GQVKKVKRVLKNL 1079
+ + + D + + A+L +I N +V+KV + K++
Sbjct: 2839 KR----LLEYDKENIKPQILAKLQKYINNPDFVPEKVEKVSKACKSM 2881
>gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo
sapiens]
Length = 1939
Score = 35.4 bits (80), Expect = 0.48
Identities = 45/211 (21%), Positives = 87/211 (41%), Gaps = 10/211 (4%)
Query: 490 QRLLSDDYDRIKCHVDEQSRDPHVLDFLKKIQDYQQFYGKSLESISTKVI-VTQTTRPKE 548
+R L D+ +K +D+ L K++ + +++++ ++ + +T
Sbjct: 944 KRKLEDECSELKKDIDDLELT------LAKVEKEKHATENKVKNLTEEMAGLDETIAKLT 997
Query: 549 DSSGASGEILQNTKPHQITKKSKKKSFLKEDQNKAQQNDDLLFSIEEEMK--NNLHSGIR 606
A E Q T ++ K + K QQ DDL S+E+E K +L R
Sbjct: 998 KEKKALQEAHQQTLDDLQMEEDKVNTLTKAKTKLEQQVDDLEGSLEQEKKLCMDLERAKR 1057
Query: 607 KLEDYLTSCASNSVKFGVEMLGLIACFKAWKKHCRG-EGKISKDLSIAVQMMKRIHSLLE 665
KLE L +++ + L K + +GKI + ++A+Q+ K+I L
Sbjct: 1058 KLEGDLKLAQESTMDTENDKQQLNEKLKKKEFEMSNLQGKIEDEQALAIQLQKKIKELQA 1117
Query: 666 RYPEILEAEHHQYIAKCLKYLGFNDLANSLD 696
R E+ E + ++ +DL+ L+
Sbjct: 1118 RIEELEEEIEAERASRAKAEKQRSDLSRELE 1148
>gi|144922720 coiled-coil domain containing 15 [Homo sapiens]
Length = 951
Score = 34.7 bits (78), Expect = 0.82
Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 30/201 (14%)
Query: 414 PLRTTRRHFLRQEKSVIQEISLEKMPSVGFIPMTSAVIDEFVGDMMKDLPILKSDDPVVP 473
P++T + + + +S+ E + + F+P A++ + ++KD +L D +
Sbjct: 383 PIKTETQGIMLKAQSIELEEGSIVLKTQDFLPTNQALLTKNQDVLLKDHCVLPKDQSI-- 440
Query: 474 SLFKQKTSDELLHWHAQRLLSDDYDRIKCHVDEQ---------SRDPHVL----DFLKKI 520
L K + D L Q +L D D + + D+ SRD HVL D L K
Sbjct: 441 -LLKYQDQDFLP--RDQHVLHKDQDILPKYQDQNFLPKDQNFLSRDQHVLPKDQDILPKY 497
Query: 521 QDYQQFYGKSLESISTKVIV---TQTTRPK--------EDSSGASGEILQNTKPHQITKK 569
QD Q F K +S V Q PK +D S + K I K
Sbjct: 498 QD-QNFLPKDQNFLSRDQHVLPKDQNILPKYQGQDFLPKDQDFLSRDQHVLPKDWNILPK 556
Query: 570 SKKKSFLKEDQNKAQQNDDLL 590
+ + FL DQ ++ ++L
Sbjct: 557 CQDQDFLPRDQGVLPKDQNIL 577
>gi|51477718 TATA box binding protein-associated factor, RNA
polymerase II, Q [Homo sapiens]
Length = 462
Score = 34.3 bits (77), Expect = 1.1
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 550 SSGASGEILQNTKPHQITKKSKKKSFLKEDQNKAQQNDDLLFSIEE-EMKNNLHSGIRKL 608
+ G S +++ K QI KK KK L + QNKAQ+ DL+ +E +KN+ S + +L
Sbjct: 384 NEGTSSIVMEIQK--QIEKKEKK---LHKIQNKAQRQKDLIMKVENLTLKNHFQSVLEQL 438
Query: 609 E 609
E
Sbjct: 439 E 439
>gi|45505178 cancer antigen 1 [Homo sapiens]
Length = 641
Score = 33.9 bits (76), Expect = 1.4
Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 49/201 (24%)
Query: 1033 EEFILFKNKIVIKKLDARKYEENLKAELTNWIKNGQVKKVKRVLKNLSPDSLSSSKDMVK 1092
EE I K KI+++K D +K +NL+ L N K+ Q + + K+M++
Sbjct: 226 EELIEDKYKIILEKNDTKKTLQNLEEVLANTQKHLQESR--------------NDKEMLQ 271
Query: 1093 MFPLLVEKLRQMDKLPAIFFLFKN---DDVGKRAGSVCTFLEKTETKSHPHTECHSYVFA 1149
+ Q K+ A + + ++ ++ SV +LE +T S
Sbjct: 272 L---------QFKKIKANYVCLQERYMTEMQQKNKSVSQYLEMDKTLSKK---------- 312
Query: 1150 IDEVLEKVRKTQKRITKKNPKKAEKLER-KKVYRAEYINFLENLKILEISEDCTYADVKA 1208
+E +E++++ +K + K + L+R K+ E+++ E + LE
Sbjct: 313 -EEEVERLQQLKKELEKATASALDLLKREKEAQEQEFLSLQEEFQKLEKE---------- 361
Query: 1209 LHTEITRNKDSTLERVLPRVR 1229
+ E + S LE++L +VR
Sbjct: 362 -NLEERQKLKSRLEKLLTQVR 381
>gi|131888281 hypothetical protein LOC55216 isoform b [Homo sapiens]
Length = 292
Score = 33.9 bits (76), Expect = 1.4
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 539 IVTQTTRPKEDSSGASGEILQNTKPHQITKKSKKKS------FLKEDQNKAQQNDDLLFS 592
I ++ + +GASG + +PH+ KKS+KKS FL+ + N + +D S
Sbjct: 179 ITADSSSEFSEETGASGT-RKGKQPHKRKKKSRKKSLKKPALFLEAESNTSHSDDSASSS 237
Query: 593 IEEEMKNNLHSGIRKLEDYL--TSCASNSVK 621
EE + + RK + TS A+N ++
Sbjct: 238 SEESEERDTKKTKRKKREKKAHTSVANNEIQ 268
>gi|131889432 hypothetical protein LOC55216 isoform a [Homo sapiens]
Length = 293
Score = 33.9 bits (76), Expect = 1.4
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 539 IVTQTTRPKEDSSGASGEILQNTKPHQITKKSKKKS------FLKEDQNKAQQNDDLLFS 592
I ++ + +GASG + +PH+ KKS+KKS FL+ + N + +D S
Sbjct: 180 ITADSSSEFSEETGASGT-RKGKQPHKRKKKSRKKSLKKPALFLEAESNTSHSDDSASSS 238
Query: 593 IEEEMKNNLHSGIRKLEDYL--TSCASNSVK 621
EE + + RK + TS A+N ++
Sbjct: 239 SEESEERDTKKTKRKKREKKAHTSVANNEIQ 269
>gi|131889391 hypothetical protein LOC55216 isoform a [Homo sapiens]
Length = 293
Score = 33.9 bits (76), Expect = 1.4
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 539 IVTQTTRPKEDSSGASGEILQNTKPHQITKKSKKKS------FLKEDQNKAQQNDDLLFS 592
I ++ + +GASG + +PH+ KKS+KKS FL+ + N + +D S
Sbjct: 180 ITADSSSEFSEETGASGT-RKGKQPHKRKKKSRKKSLKKPALFLEAESNTSHSDDSASSS 238
Query: 593 IEEEMKNNLHSGIRKLEDYL--TSCASNSVK 621
EE + + RK + TS A+N ++
Sbjct: 239 SEESEERDTKKTKRKKREKKAHTSVANNEIQ 269
>gi|116805340 glycyl-tRNA synthetase [Homo sapiens]
Length = 739
Score = 33.5 bits (75), Expect = 1.8
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 18/100 (18%)
Query: 415 LRTTRRHFLRQEKSVIQEISLEKMPSVGFIPMTSAVIDEFVGDMMKDLPILKSDDPVVPS 474
++T R+HF+++E+ I EI + + TS +D+F M+KD+ K+ +
Sbjct: 162 IQTWRQHFIQEEQ--ILEIDCTMLTPEPVLK-TSGHVDKFADFMVKDV---KNGE----- 210
Query: 475 LFKQKTSDELLHWHAQRLLSDDYDRIKCHVDEQSRDPHVL 514
F+ +D LL H Q+L+SD KC V+++S VL
Sbjct: 211 CFR---ADHLLKAHLQKLMSDK----KCSVEKKSEMESVL 243
>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
sapiens]
Length = 1939
Score = 33.5 bits (75), Expect = 1.8
Identities = 44/211 (20%), Positives = 86/211 (40%), Gaps = 10/211 (4%)
Query: 490 QRLLSDDYDRIKCHVDEQSRDPHVLDFLKKIQDYQQFYGKSLESISTKVI-VTQTTRPKE 548
+R L D+ +K +D+ L K++ + +++++ ++ + +T
Sbjct: 944 KRKLEDECSELKKDIDDLELT------LAKVEKEKHATENKVKNLTEEMAGLDETIAKLT 997
Query: 549 DSSGASGEILQNTKPHQITKKSKKKSFLKEDQNKAQQNDDLLFSIEEEMK--NNLHSGIR 606
A E Q T ++ K + K QQ DDL S+E+E K +L R
Sbjct: 998 KEKKALQEAHQQTLDDLQAEEDKVNTLTKAKIKLEQQVDDLEGSLEQEKKIRMDLERAKR 1057
Query: 607 KLEDYLTSCASNSVKFGVEMLGLIACFKAWKKHCRG-EGKISKDLSIAVQMMKRIHSLLE 665
KLE L +++ + L K + G + KI + ++ +Q+ K+I L
Sbjct: 1058 KLEGDLKLAQESTMDIENDKQQLDEKLKKKEFEMSGLQSKIEDEQALGMQLQKKIKELQA 1117
Query: 666 RYPEILEAEHHQYIAKCLKYLGFNDLANSLD 696
R E+ E + ++ +DL+ L+
Sbjct: 1118 RIEELEEEIEAERASRAKAEKQRSDLSRELE 1148
>gi|14591902 RecQ protein-like [Homo sapiens]
Length = 649
Score = 33.5 bits (75), Expect = 1.8
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 1230 FTRHGKELKALAQRGIGYH----HSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMP 1285
F++ E ++ + +G H H+++ ++K V + I+VV AT +GI P
Sbjct: 322 FSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKP 381
Query: 1286 CKSVVFAQDSVYLDALNYRQMSGRAGR 1312
V S+ NY Q SGRAGR
Sbjct: 382 DVRFVI-HHSMSKSMENYYQESGRAGR 407
>gi|14591904 RecQ protein-like [Homo sapiens]
Length = 649
Score = 33.5 bits (75), Expect = 1.8
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 1230 FTRHGKELKALAQRGIGYH----HSSMYFKEKEFVEILFVKGLIRVVTATETLALGIHMP 1285
F++ E ++ + +G H H+++ ++K V + I+VV AT +GI P
Sbjct: 322 FSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKP 381
Query: 1286 CKSVVFAQDSVYLDALNYRQMSGRAGR 1312
V S+ NY Q SGRAGR
Sbjct: 382 DVRFVI-HHSMSKSMENYYQESGRAGR 407
>gi|37221175 PH domain and leucine rich repeat protein phosphatase
[Homo sapiens]
Length = 1205
Score = 32.7 bits (73), Expect = 3.1
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 12/130 (9%)
Query: 179 ESDTLRFY---AYTMESTDRNQTFSKENETVIQSAYKSLIQHLEEIRVLVLATHFEHLK- 234
++D+LRF A +ES T S+E +++Q Y L + + + L T HLK
Sbjct: 472 KADSLRFLNASANKLESLPP-ATLSEETNSILQELY--LTNNSLTDKCVPLLTGHPHLKI 528
Query: 235 ----WNDMMEEAYQTLFLLQHLWSEGSDIQRVLCVTSCSLSLRMYHRVLVHSNCLSL-QE 289
+N + + L+ L ++ + + ++ R H V+ HSNC+ + E
Sbjct: 529 LHMAYNRLQSFPASKMAKLEELEEIDLSGNKLKAIPTTIMNCRRMHTVIAHSNCIEVFPE 588
Query: 290 VEDFCRLRCL 299
V ++C+
Sbjct: 589 VMQLPEIKCV 598
>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
sapiens]
Length = 1940
Score = 32.7 bits (73), Expect = 3.1
Identities = 40/191 (20%), Positives = 81/191 (42%), Gaps = 18/191 (9%)
Query: 490 QRLLSDDYDRIKCHVDEQSRDPHVLDFLKKIQDYQQFYGKSLESISTKV-----IVTQTT 544
+R L D+ +K +D+ L K++ + +++++ ++ + + T
Sbjct: 941 KRKLEDECSELKKDIDDLELT------LAKVEKEKHATENKVKNLTEELSGLDETIAKLT 994
Query: 545 RPKEDSSGASGEILQNTKPHQITKKSKKKSFLKEDQNKAQQNDDLLFSIEEEMKN--NLH 602
R K+ A + L + + ++ K S K QQ +DL S+E+E K +L
Sbjct: 995 REKKALQEAHQQALDDLQ----AEEDKVNSLNKTKSKLEQQVEDLESSLEQEKKLRVDLE 1050
Query: 603 SGIRKLEDYLTSCASNSVKFGVEMLGLIACFKAWK-KHCRGEGKISKDLSIAVQMMKRIH 661
RKLE L + + + L K ++C+ + K+ + ++ +Q K+I
Sbjct: 1051 RNKRKLEGDLKLAQESILDLENDKQQLDERLKKKDFEYCQLQSKVEDEQTLGLQFQKKIK 1110
Query: 662 SLLERYPEILE 672
L R E+ E
Sbjct: 1111 ELQARIEELEE 1121
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 32.7 bits (73), Expect = 3.1
Identities = 44/210 (20%), Positives = 85/210 (40%), Gaps = 40/210 (19%)
Query: 1053 EENLKAELTNWIKNGQVKKVKRVLKNLSPDSLSSSK---DMVKMFPLLVEKLRQMDKLPA 1109
E + + +W Q+ +++ L L D +S+ D++ +L +KL+ ++++P
Sbjct: 1190 ENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQDLLFDVSVLKKKLKMLERIPE 1249
Query: 1110 IFFLFK--NDDVGKRAGSVCTFLEKTETKSHP----HTECHSYVFAIDEVLEKVR----- 1158
+K +DV + + L ET+ + E + VF + + L+K+
Sbjct: 1250 ASPKYKLLYEDVSRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEVTET 1309
Query: 1159 -----KTQKRITKKNPK----------KAEKLERKKVYRAEYINFLENLKILEISEDCTY 1203
K+ + +N + K EKL+ V R + + +L+ LEI D
Sbjct: 1310 FLSLEKSYDEVKIENEELNVLVLRLQGKIEKLQESVVQRCDCCLWEASLENLEIEPDGNI 1369
Query: 1204 ADVKALHTEITRNKDSTLERVLPRVRFTRH 1233
+ + TLE +PRVR H
Sbjct: 1370 LQL-----------NQTLEECVPRVRSVHH 1388
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 32.7 bits (73), Expect = 3.1
Identities = 44/210 (20%), Positives = 85/210 (40%), Gaps = 40/210 (19%)
Query: 1053 EENLKAELTNWIKNGQVKKVKRVLKNLSPDSLSSSK---DMVKMFPLLVEKLRQMDKLPA 1109
E + + +W Q+ +++ L L D +S+ D++ +L +KL+ ++++P
Sbjct: 1184 ENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQDLLFDVSVLKKKLKMLERIPE 1243
Query: 1110 IFFLFK--NDDVGKRAGSVCTFLEKTETKSHP----HTECHSYVFAIDEVLEKVR----- 1158
+K +DV + + L ET+ + E + VF + + L+K+
Sbjct: 1244 ASPKYKLLYEDVSRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEVTET 1303
Query: 1159 -----KTQKRITKKNPK----------KAEKLERKKVYRAEYINFLENLKILEISEDCTY 1203
K+ + +N + K EKL+ V R + + +L+ LEI D
Sbjct: 1304 FLSLEKSYDEVKIENEELNVLVLRLQGKIEKLQESVVQRCDCCLWEASLENLEIEPDGNI 1363
Query: 1204 ADVKALHTEITRNKDSTLERVLPRVRFTRH 1233
+ + TLE +PRVR H
Sbjct: 1364 LQL-----------NQTLEECVPRVRSVHH 1382
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 32.7 bits (73), Expect = 3.1
Identities = 44/210 (20%), Positives = 85/210 (40%), Gaps = 40/210 (19%)
Query: 1053 EENLKAELTNWIKNGQVKKVKRVLKNLSPDSLSSSK---DMVKMFPLLVEKLRQMDKLPA 1109
E + + +W Q+ +++ L L D +S+ D++ +L +KL+ ++++P
Sbjct: 1184 ENSEETRTESWELKNQISQLQEQLMMLCADCDRASEKKQDLLFDVSVLKKKLKMLERIPE 1243
Query: 1110 IFFLFK--NDDVGKRAGSVCTFLEKTETKSHP----HTECHSYVFAIDEVLEKVR----- 1158
+K +DV + + L ET+ + E + VF + + L+K+
Sbjct: 1244 ASPKYKLLYEDVSRENDCLQEELRMMETRYDEALENNKELTAEVFRLQDELKKMEEVTET 1303
Query: 1159 -----KTQKRITKKNPK----------KAEKLERKKVYRAEYINFLENLKILEISEDCTY 1203
K+ + +N + K EKL+ V R + + +L+ LEI D
Sbjct: 1304 FLSLEKSYDEVKIENEELNVLVLRLQGKIEKLQESVVQRCDCCLWEASLENLEIEPDGNI 1363
Query: 1204 ADVKALHTEITRNKDSTLERVLPRVRFTRH 1233
+ + TLE +PRVR H
Sbjct: 1364 LQL-----------NQTLEECVPRVRSVHH 1382
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,576,233
Number of Sequences: 37866
Number of extensions: 2719231
Number of successful extensions: 7280
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 7185
Number of HSP's gapped (non-prelim): 140
length of query: 1706
length of database: 18,247,518
effective HSP length: 116
effective length of query: 1590
effective length of database: 13,855,062
effective search space: 22029548580
effective search space used: 22029548580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.