LOC652147 9278

Name: LOC652147	Sequence: fasta or formatted (1700aa)		NCBI GI: 169218225
Description: PREDICTED: similar to U5 snRNP-specific 200kD protein, partial		Referenced in: Jun / Fos Complexes Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.6 96 2 C cysteine 1.4 24 1 D aspartate 5.2 89 2 E glutamate 7.4 125 3 F phenylalanine 3.8 64 2 G glycine 4.8 81 2 H histidine 2.9 49 2 I isoleucine 6.5 110 3 K lysine 6.2 105 2 L leucine 11.9 202 3 M methionine 2.7 46 1 N asparagine 4.1 70 2 P proline 4.6 79 3 Q glutamine 4.6 79 2 R arginine 5.2 89 2 S serine 5.8 98 3 T threonine 5.5 93 2 V valine 7.2 122 3 W tryptophan 1.2 20 2 Y tyrosine 3.5 59 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to U5 snRNP-specific 200kD prote... SNRNP200 0.985 activating signal cointegrator 1 complex subunit 3-l... ASCC3 0.438 activating signal cointegrator 1 complex subunit 3 i... LOC100293655 0.132 PREDICTED: similar to SNRNP200 protein LOC100289243 0.114 PREDICTED: hypothetical protein XP_002343618 HFM1 0.088 HFM1 protein POLQ 0.033 DNA polymerase theta HELQ 0.031 DNA helicase HEL308 SKIV2L 0.024 superkiller viralicidic activity 2-like homolog [Hom... SKIV2L2 0.020 superkiller viralicidic activity 2-like 2 SEC63 0.012 SEC63-like protein DDX60 0.012 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 DDX60L 0.009 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like [Hom... DDX46 0.006 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 RECQL5 0.006 RecQ protein-like 5 isoform 1 RECQL5 0.006 RecQ protein-like 5 isoform 3 RECQL5 0.006 RecQ protein-like 5 isoform 2 IFIH1 0.005 interferon induced with helicase C domain 1 DICER1 0.005 dicer1 DICER1 0.005 dicer1 DDX52 0.005 ATP-dependent RNA helicase ROK1 isoform b DDX52 0.005 ATP-dependent RNA helicase ROK1 isoform a DDX55 0.004 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 DHX58 0.004 RNA helicase LGP2 DDX58 0.004 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I [... DDX4 0.004 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ... DDX4 0.004 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [... DDX4 0.004 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ... BLM 0.004 Bloom syndrome protein WRN 0.004 Werner syndrome protein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.