SNRNP200 27354

Name: SNRNP200	Sequence: fasta or formatted (2136aa)		NCBI GI: 40217847
Description: activating signal cointegrator 1 complex subunit 3-like 1		Referenced in: Jun / Fos Complexes Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.9 126 2 C cysteine 1.4 29 1 D aspartate 6.3 135 3 E glutamate 8.1 173 3 F phenylalanine 3.4 73 2 G glycine 4.8 102 2 H histidine 2.7 57 2 I isoleucine 6.1 130 3 K lysine 6.4 137 3 L leucine 11.6 248 3 M methionine 2.9 61 2 N asparagine 3.8 81 2 P proline 4.0 85 3 Q glutamine 4.8 102 2 R arginine 5.8 123 2 S serine 5.7 121 3 T threonine 5.4 115 2 V valine 6.8 145 3 W tryptophan 0.9 20 2 Y tyrosine 3.4 73 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 activating signal cointegrator 1 complex subunit 3-l... LOC652147 0.787 PREDICTED: similar to U5 snRNP-specific 200kD prote... ASCC3 0.357 activating signal cointegrator 1 complex subunit 3 i... LOC100293655 0.112 PREDICTED: similar to SNRNP200 protein LOC100289243 0.097 PREDICTED: hypothetical protein XP_002343618 HFM1 0.071 HFM1 protein POLQ 0.026 DNA polymerase theta HELQ 0.025 DNA helicase HEL308 SKIV2L 0.021 superkiller viralicidic activity 2-like homolog [Hom... SKIV2L2 0.017 superkiller viralicidic activity 2-like 2 SEC63 0.012 SEC63-like protein DDX60 0.009 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 DDX60L 0.008 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like [Hom... DDX46 0.005 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 RECQL5 0.005 RecQ protein-like 5 isoform 1 RECQL5 0.005 RecQ protein-like 5 isoform 3 RECQL5 0.005 RecQ protein-like 5 isoform 2 IFIH1 0.004 interferon induced with helicase C domain 1 DDX52 0.004 ATP-dependent RNA helicase ROK1 isoform b DDX52 0.004 ATP-dependent RNA helicase ROK1 isoform a DDX55 0.004 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 DICER1 0.004 dicer1 DICER1 0.004 dicer1 DDX43 0.004 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 HTATSF1 0.004 HIV-1 Tat specific factor 1 HTATSF1 0.004 HIV-1 Tat specific factor 1 DHX58 0.004 RNA helicase LGP2 ESF1 0.004 ABT1-associated protein DDX58 0.003 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I [... FANCM 0.003 Fanconi anemia, complementation group M Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.