Search of human proteins with 14916461

Search of human proteins with 14916461

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14916461 RNA binding motif protein 18 [Homo sapiens]
         (190 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14916461 RNA binding motif protein 18 [Homo sapiens]               387   e-108
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]              51   7e-07
gi|188219593 TIA1 protein isoform 1 [Homo sapiens]                     50   2e-06
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]                50   2e-06
gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]       49   2e-06
gi|224028246 non-POU domain containing, octamer-binding isoform ...    48   4e-06
gi|224028244 non-POU domain containing, octamer-binding isoform ...    48   4e-06
gi|34932414 non-POU domain containing, octamer-binding isoform 1...    48   4e-06
gi|188219591 TIA1 protein isoform 2 [Homo sapiens]                     48   6e-06
gi|122937227 U2-associated SR140 protein [Homo sapiens]                48   6e-06
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho...    47   8e-06
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo...    47   8e-06
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...    47   8e-06
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]             47   1e-05
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]      45   4e-05
gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]       45   5e-05
gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]       45   5e-05
gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]        45   5e-05
gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens]        45   5e-05
gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens]        45   5e-05
gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]        45   5e-05
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]           45   5e-05
gi|14719414 boule isoform 2 [Homo sapiens]                             44   6e-05
gi|37574731 boule isoform 1 [Homo sapiens]                             44   6e-05
gi|38454188 RNA binding motif protein 41 [Homo sapiens]                44   6e-05
gi|60279268 U2 (RNU2) small nuclear RNA auxiliary factor 2 isofo...    44   8e-05
gi|6005926 U2 (RNU2) small nuclear RNA auxiliary factor 2 isofor...    44   8e-05
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s...    44   8e-05
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa...    44   1e-04
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]      44   1e-04

>gi|14916461 RNA binding motif protein 18 [Homo sapiens]
          Length = 190

 Score =  387 bits (993), Expect = e-108
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 1   MEAETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHK 60
           MEAETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHK
Sbjct: 1   MEAETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHK 60

Query: 61  SGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKIL 120
           SGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKIL
Sbjct: 61  SGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKIL 120

Query: 121 PISLEPSSSTEPTQSNLSVTAKIKAIEAKLKMMAENPDAEYPAAPVYSYFKPPDKKRTTP 180
           PISLEPSSSTEPTQSNLSVTAKIKAIEAKLKMMAENPDAEYPAAPVYSYFKPPDKKRTTP
Sbjct: 121 PISLEPSSSTEPTQSNLSVTAKIKAIEAKLKMMAENPDAEYPAAPVYSYFKPPDKKRTTP 180

Query: 181 YSRTAWKSRR 190
           YSRTAWKSRR
Sbjct: 181 YSRTAWKSRR 190


>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
          Length = 375

 Score = 50.8 bits (120), Expect = 7e-07
 Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 7/143 (4%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAI 86
           L++GNL   +TE  +L+L  + G  K    +   +      P  YCFV F   ++A  A+
Sbjct: 11  LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS---NDP--YCFVEFYEHRDAAAAL 65

Query: 87  QCLNGKLALSKKLVVRWAHA-QVKRYDHNKNDKILPISLEPSSSTEPTQSNLSVTAKIKA 145
             +NG+  L K++ V WA     ++ D + +  +    L P  +TE  +S  +   KI  
Sbjct: 66  AAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISD 125

Query: 146 IEAKLKMMAENPDAEYPAAPVYS 168
               +K MA      Y     Y+
Sbjct: 126 ARV-VKDMATGKSKGYGFVSFYN 147



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAI 86
           +++G+L P+IT   +      FGK+     +        G+ +GY FV+F  K +AE AI
Sbjct: 99  VFVGDLSPEITTEDIKSAFAPFGKISDARVV---KDMATGKSKGYGFVSFYNKLDAENAI 155

Query: 87  QCLNGKLALSKKLVVRWA 104
             + G+    +++   WA
Sbjct: 156 VHMGGQWLGGRQIRTNWA 173



 Score = 28.1 bits (61), Expect = 4.8
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 4   ETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGA 63
           E  T  L    ++++ S  +   ++ G +   +T+  + +    FG++ +      K   
Sbjct: 185 ENNTKQLRFEDVVNQSS-PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK--- 240

Query: 64  LEGQPRGYCFVNFETKQEAEQAIQCLNG 91
                 GY FV F T + A  AI  +NG
Sbjct: 241 ------GYSFVRFSTHESAAHAIVSVNG 262


>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
          Length = 375

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAI 86
           L++GNL   +TE  +L+L  + G  K    +   +G     P  YCFV F   + A  A+
Sbjct: 9   LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG---NDP--YCFVEFHEHRHAAAAL 63

Query: 87  QCLNGKLALSKKLVVRWAHA-QVKRYDHNKNDKILPISLEPSSSTEPTQSNLSVTAKI 143
             +NG+  + K++ V WA     ++ D + +  +    L P  +TE  ++  +   +I
Sbjct: 64  AAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI 121



 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAI 86
           +++G+L P+IT   +      FG++     +        G+ +GY FV+F  K +AE AI
Sbjct: 97  VFVGDLSPEITTEDIKAAFAPFGRISDARVV---KDMATGKSKGYGFVSFFNKWDAENAI 153

Query: 87  QCLNGKLALSKKLVVRWA 104
           Q + G+    +++   WA
Sbjct: 154 QQMGGQWLGGRQIRTNWA 171



 Score = 27.3 bits (59), Expect = 8.1
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 4   ETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGA 63
           E+ T  L    ++++ S      ++ G +   +TE  + +    FG++ +      K   
Sbjct: 183 ESNTKQLSYDEVVNQSS-PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK--- 238

Query: 64  LEGQPRGYCFVNFETKQEAEQAIQCLNG 91
                 GY FV F + + A  AI  +NG
Sbjct: 239 ------GYSFVRFNSHESAAHAIVSVNG 260


>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
          Length = 424

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 20  SLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETK 79
           +L  G  ++IGNLDP+I E  L      FG + Q   +        G  +GY F+NF + 
Sbjct: 95  NLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDT--GNSKGYAFINFASF 152

Query: 80  QEAEQAIQCLNGKLALSKKLVVRWA 104
             ++ AI+ +NG+   ++ + V +A
Sbjct: 153 DASDAAIEAMNGQYLCNRPITVSYA 177


>gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]
          Length = 312

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 8/106 (7%)

Query: 3   AETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSG 62
           A+T + PL  +    +   Q+  RL + N+  +  +  L ++  +FGK+   + +F++ G
Sbjct: 80  AQTDSQPLHPSDPTEK---QQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG 136

Query: 63  ALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQV 108
           +     +G+ FV FET  +A++A + LNG +   +K+ V  A A+V
Sbjct: 137 S-----KGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARV 177


>gi|224028246 non-POU domain containing, octamer-binding isoform 1
           [Homo sapiens]
          Length = 471

 Score = 48.1 bits (113), Expect = 4e-06
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 9/101 (8%)

Query: 4   ETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGA 63
           E  T+ L+N     E +  +  RL++GNL P ITE  + KL +K+GK    +   HK   
Sbjct: 53  EGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAG--EVFIHKD-- 108

Query: 64  LEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWA 104
                +G+ F+  ET+  AE A   L+      K+L VR+A
Sbjct: 109 -----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 144


>gi|224028244 non-POU domain containing, octamer-binding isoform 1
           [Homo sapiens]
          Length = 471

 Score = 48.1 bits (113), Expect = 4e-06
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 9/101 (8%)

Query: 4   ETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGA 63
           E  T+ L+N     E +  +  RL++GNL P ITE  + KL +K+GK    +   HK   
Sbjct: 53  EGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAG--EVFIHKD-- 108

Query: 64  LEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWA 104
                +G+ F+  ET+  AE A   L+      K+L VR+A
Sbjct: 109 -----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 144


>gi|34932414 non-POU domain containing, octamer-binding isoform 1
           [Homo sapiens]
          Length = 471

 Score = 48.1 bits (113), Expect = 4e-06
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 9/101 (8%)

Query: 4   ETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGA 63
           E  T+ L+N     E +  +  RL++GNL P ITE  + KL +K+GK    +   HK   
Sbjct: 53  EGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAG--EVFIHKD-- 108

Query: 64  LEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWA 104
                +G+ F+  ET+  AE A   L+      K+L VR+A
Sbjct: 109 -----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 144


>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
          Length = 386

 Score = 47.8 bits (112), Expect = 6e-06
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAI 86
           L++GNL   +TE  +L+L  + G  K    +   +G     P  YCFV F   + A  A+
Sbjct: 9   LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG---NDP--YCFVEFHEHRHAAAAL 63

Query: 87  QCLNGKLALSKKLVVRWA 104
             +NG+  + K++ V WA
Sbjct: 64  AAMNGRKIMGKEVKVNWA 81



 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 12  NASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGY 71
           +++++S    Q+   +++G+L P+IT   +      FG++     +        G+ +GY
Sbjct: 93  SSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVV---KDMATGKSKGY 149

Query: 72  CFVNFETKQEAEQAIQCLNGKLALSKKLVVRWA 104
            FV+F  K +AE AIQ + G+    +++   WA
Sbjct: 150 GFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182



 Score = 27.3 bits (59), Expect = 8.1
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 4   ETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGA 63
           E+ T  L    ++++ S      ++ G +   +TE  + +    FG++ +      K   
Sbjct: 194 ESNTKQLSYDEVVNQSS-PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK--- 249

Query: 64  LEGQPRGYCFVNFETKQEAEQAIQCLNG 91
                 GY FV F + + A  AI  +NG
Sbjct: 250 ------GYSFVRFNSHESAAHAIVSVNG 271


>gi|122937227 U2-associated SR140 protein [Homo sapiens]
          Length = 1029

 Score = 47.8 bits (112), Expect = 6e-06
 Identities = 22/80 (27%), Positives = 47/80 (58%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAI 86
           L++GN++P++ E  L +   +FG +     ++ ++     + R   FV F  +++AE+A+
Sbjct: 276 LYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERAL 335

Query: 87  QCLNGKLALSKKLVVRWAHA 106
           + LNGK+ +S ++ + W  A
Sbjct: 336 KNLNGKMIMSFEMKLGWGKA 355


>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
           sapiens]
          Length = 631

 Score = 47.4 bits (111), Expect = 8e-06
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 20  SLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETK 79
           S  +G  L+I NLD  I +  L K    FG +     +       +G+ +G+ FV F + 
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-----DGRSKGFGFVCFSSP 343

Query: 80  QEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKN 116
           +EA +A+  +NG++  SK L V  A  + +R  H  N
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTN 380



 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAI 86
           ++I NLD  I    L      FG +     +  ++G+     +GY FV+FET++ A++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155

Query: 87  QCLNGKLALSKKLVV 101
           + +NG L   +K+ V
Sbjct: 156 EKMNGMLLNDRKVFV 170



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 22  QEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQE 81
           +E   ++I N   ++ +  L +L  +FGK      +   +G    + +G+ FV++E  ++
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG----KSKGFGFVSYEKHED 243

Query: 82  AEQAIQCLNGKLALSKKLVVRWAHAQVKR 110
           A +A++ +NGK    K + V  A  +V+R
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVER 272



 Score = 33.9 bits (76), Expect = 0.087
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQF----DFLFHKSGALEGQPRGYCFVNFETKQEA 82
           L++G+L   +TE  L +     G V       D +  +S        GY +VNF+   +A
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRS-------LGYAYVNFQQPADA 65

Query: 83  EQAIQCLNGKLALSKKLVVRWA 104
           E+A+  +N  +   K + + W+
Sbjct: 66  ERALDTMNFDVIKGKPIRIMWS 87


>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
           sapiens]
          Length = 644

 Score = 47.4 bits (111), Expect = 8e-06
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 20  SLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETK 79
           S  +G  L+I NLD  I +  L K    FG +     +       +G+ +G+ FV F + 
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-----DGRSKGFGFVCFSSP 343

Query: 80  QEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKN 116
           +EA +A+  +NG++  SK L V  A  + +R  H  N
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTN 380



 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAI 86
           ++I NLD  I    L      FG +     +  ++G+     +GY FV+FET++ A++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155

Query: 87  QCLNGKLALSKKLVV 101
           + +NG L   +K+ V
Sbjct: 156 EKMNGMLLNDRKVFV 170



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 22  QEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQE 81
           +E   ++I N   ++ +  L +L  +FGK      +   +G    + +G+ FV++E  ++
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG----KSKGFGFVSYEKHED 243

Query: 82  AEQAIQCLNGKLALSKKLVVRWAHAQVKR 110
           A +A++ +NGK    K + V  A  +V+R
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVER 272



 Score = 33.9 bits (76), Expect = 0.087
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQF----DFLFHKSGALEGQPRGYCFVNFETKQEA 82
           L++G+L   +TE  L +     G V       D +  +S        GY +VNF+   +A
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRS-------LGYAYVNFQQPADA 65

Query: 83  EQAIQCLNGKLALSKKLVVRWA 104
           E+A+  +N  +   K + + W+
Sbjct: 66  ERALDTMNFDVIKGKPIRIMWS 87


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score = 47.4 bits (111), Expect = 8e-06
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 20  SLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETK 79
           S  +G  L+I NLD  I +  L K    FG +     +       +G+ +G+ FV F + 
Sbjct: 289 SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-----DGRSKGFGFVCFSSP 343

Query: 80  QEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKN 116
           +EA +A+  +NG++  SK L V  A  + +R  H  N
Sbjct: 344 EEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTN 380



 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAI 86
           ++I NLD  I    L      FG +     +  ++G+     +GY FV+FET++ A++AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYAFVHFETQEAADKAI 155

Query: 87  QCLNGKLALSKKLVV 101
           + +NG L   +K+ V
Sbjct: 156 EKMNGMLLNDRKVFV 170



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 22  QEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQE 81
           +E   ++I N   ++ +  L +L  +FGK      +   +G    + +G+ FV++E  ++
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG----KSKGFGFVSYEKHED 243

Query: 82  AEQAIQCLNGKLALSKKLVVRWAHAQVKR 110
           A +A++ +NGK    K + V  A  +V+R
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVER 272



 Score = 33.9 bits (76), Expect = 0.087
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 11/82 (13%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQF----DFLFHKSGALEGQPRGYCFVNFETKQEA 82
           L++G+L   +TE  L +     G V       D +  +S        GY +VNF+   +A
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRS-------LGYAYVNFQQPADA 65

Query: 83  EQAIQCLNGKLALSKKLVVRWA 104
           E+A+  +N  +   K + + W+
Sbjct: 66  ERALDTMNFDVIKGKPIRIMWS 87


>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
          Length = 392

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 26/161 (16%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQ------------------FDFLFHKSGALEGQP 68
           L++GNL   +TE  +L+L  + G  K                   F  L H S       
Sbjct: 11  LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSND----- 65

Query: 69  RGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHA-QVKRYDHNKNDKILPISLEPS 127
             YCFV F   ++A  A+  +NG+  L K++ V WA     ++ D + +  +    L P 
Sbjct: 66  -PYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124

Query: 128 SSTEPTQSNLSVTAKIKAIEAKLKMMAENPDAEYPAAPVYS 168
            +TE  +S  +   KI      +K MA      Y     Y+
Sbjct: 125 ITTEDIKSAFAPFGKISDARV-VKDMATGKSKGYGFVSFYN 164



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAI 86
           +++G+L P+IT   +      FGK+     +        G+ +GY FV+F  K +AE AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVV---KDMATGKSKGYGFVSFYNKLDAENAI 172

Query: 87  QCLNGKLALSKKLVVRWA 104
             + G+    +++   WA
Sbjct: 173 VHMGGQWLGGRQIRTNWA 190



 Score = 28.1 bits (61), Expect = 4.8
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 4   ETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGA 63
           E  T  L    ++++ S  +   ++ G +   +T+  + +    FG++ +      K   
Sbjct: 202 ENNTKQLRFEDVVNQSS-PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK--- 257

Query: 64  LEGQPRGYCFVNFETKQEAEQAIQCLNG 91
                 GY FV F T + A  AI  +NG
Sbjct: 258 ------GYSFVRFSTHESAAHAIVSVNG 279


>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
          Length = 636

 Score = 45.1 bits (105), Expect = 4e-05
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 23  EGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEA 82
           +G  L++ NLD  I +  L K    FG +     +        G+ +G+ FV F + +EA
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-----GRSKGFGFVCFSSPEEA 346

Query: 83  EQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKN 116
            +A+  +NG++  +K L V  A  + +R  H  N
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQRKEERQAHLTN 380



 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAI 86
           ++I NLD  I    L      FG +     +  ++G+     +GY FV+FET++ AE+AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-----KGYGFVHFETQEAAERAI 155

Query: 87  QCLNGKLALSKKLVV 101
           + +NG L   +K+ V
Sbjct: 156 EKMNGMLLNDRKVFV 170



 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 11/105 (10%)

Query: 22  QEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQE 81
           +E   ++I N    + +  L  L  KFG       +  +SG    + +G+ FV+FE  ++
Sbjct: 188 KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG----KSKGFGFVSFERHED 243

Query: 82  AEQAIQCLNGKLALSKKLVVRWAHAQVKR-------YDHNKNDKI 119
           A++A+  +NGK    K++ V  A  +V+R       ++  K D+I
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 288



 Score = 36.2 bits (82), Expect = 0.017
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 11/82 (13%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQF----DFLFHKSGALEGQPRGYCFVNFETKQEA 82
           L++G+L P +TE  L +     G +       D +  +S        GY +VNF+   +A
Sbjct: 13  LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRS-------LGYAYVNFQQPADA 65

Query: 83  EQAIQCLNGKLALSKKLVVRWA 104
           E+A+  +N  +   K + + W+
Sbjct: 66  ERALDTMNFDVIKGKPVRIMWS 87


>gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
          Length = 397

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 2   EAETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKS 61
           + + +T P EN    S+       RL + N+  +  +  L ++  +FGK+   + +F++ 
Sbjct: 99  DGQPQTQPSENTENKSQPK-----RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER 153

Query: 62  GALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQV 108
           G+     +G+ FV FE   +A++A + L+G +   +K+ V  A A+V
Sbjct: 154 GS-----KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 195


>gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]
          Length = 370

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 2   EAETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKS 61
           + + +T P EN    S+       RL + N+  +  +  L ++  +FGK+   + +F++ 
Sbjct: 99  DGQPQTQPSENTENKSQPK-----RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER 153

Query: 62  GALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQV 108
           G+     +G+ FV FE   +A++A + L+G +   +K+ V  A A+V
Sbjct: 154 GS-----KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 195


>gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]
          Length = 395

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 2   EAETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKS 61
           + + +T P EN    S+       RL + N+  +  +  L ++  +FGK+   + +F++ 
Sbjct: 119 DGQPQTQPSENTENKSQPK-----RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER 173

Query: 62  GALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQV 108
           G+     +G+ FV FE   +A++A + L+G +   +K+ V  A A+V
Sbjct: 174 GS-----KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 215


>gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens]
          Length = 392

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 2   EAETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKS 61
           + + +T P EN    S+       RL + N+  +  +  L ++  +FGK+   + +F++ 
Sbjct: 119 DGQPQTQPSENTENKSQPK-----RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER 173

Query: 62  GALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQV 108
           G+     +G+ FV FE   +A++A + L+G +   +K+ V  A A+V
Sbjct: 174 GS-----KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 215


>gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens]
          Length = 418

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 2   EAETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKS 61
           + + +T P EN    S+       RL + N+  +  +  L ++  +FGK+   + +F++ 
Sbjct: 119 DGQPQTQPSENTENKSQPK-----RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER 173

Query: 62  GALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQV 108
           G+     +G+ FV FE   +A++A + L+G +   +K+ V  A A+V
Sbjct: 174 GS-----KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 215


>gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
          Length = 397

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 2   EAETKTLPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKS 61
           + + +T P EN    S+       RL + N+  +  +  L ++  +FGK+   + +F++ 
Sbjct: 99  DGQPQTQPSENTENKSQPK-----RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER 153

Query: 62  GALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQV 108
           G+     +G+ FV FE   +A++A + L+G +   +K+ V  A A+V
Sbjct: 154 GS-----KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 195


>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
          Length = 465

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 11/114 (9%)

Query: 4   ETKTLPLENASI----LSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFH 59
           E KTLP  N  I        S  E  +L++G L  + T+  + K+ + FG + +   L  
Sbjct: 70  EQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVL-- 127

Query: 60  KSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLAL---SKKLVVRWAHAQVKR 110
                +G  +G  FV F+T  EA+ AI  L+    L   S  LVV++A  + +R
Sbjct: 128 --RGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKER 179



 Score = 32.7 bits (73), Expect = 0.19
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 23  EGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEA 82
           +G  ++I +L  + T+  +L++   FG V        ++     Q + + FV+F+    A
Sbjct: 378 DGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA---TNQSKCFGFVSFDNPASA 434

Query: 83  EQAIQCLNGKLALSKKLVVR 102
           + AIQ +NG     K+L V+
Sbjct: 435 QAAIQAMNGFQIGMKRLKVQ 454


>gi|14719414 boule isoform 2 [Homo sapiens]
          Length = 283

 Score = 44.3 bits (103), Expect = 6e-05
 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 8  LPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQ 67
          +PL N +          +R+++G +D K  E  L K   ++G VK+   +  ++G     
Sbjct: 16 VPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGV---- 71

Query: 68 PRGYCFVNFETKQEAEQAIQ 87
           +GY FV FET+++A++ +Q
Sbjct: 72 SKGYGFVTFETQEDAQKILQ 91


>gi|37574731 boule isoform 1 [Homo sapiens]
          Length = 295

 Score = 44.3 bits (103), Expect = 6e-05
 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 8   LPLENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQ 67
           +PL N +          +R+++G +D K  E  L K   ++G VK+   +  ++G     
Sbjct: 28  VPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGV---- 83

Query: 68  PRGYCFVNFETKQEAEQAIQ 87
            +GY FV FET+++A++ +Q
Sbjct: 84  SKGYGFVTFETQEDAQKILQ 103


>gi|38454188 RNA binding motif protein 41 [Homo sapiens]
          Length = 413

 Score = 44.3 bits (103), Expect = 6e-05
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAI 86
           L++ NL P++TE  L+ L  +F + K     F     + G+ RG  F+ F  K+ A QA+
Sbjct: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM---MTGRMRGQAFITFPNKEIAWQAL 367

Query: 87  QCLNGKLALSKKLVVRWAHAQVKR 110
             +NG     K LV+ +   + +R
Sbjct: 368 HLVNGYKLYGKILVIEFGKNKKQR 391


>gi|60279268 U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform
           b [Homo sapiens]
          Length = 471

 Score = 43.9 bits (102), Expect = 8e-05
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 11  ENASILSEGSLQ-----EGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALE 65
           EN S+   G +        H+L+IG L   + +  + +LL  FG +K F+ +     +  
Sbjct: 240 ENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLV---KDSAT 296

Query: 66  GQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVK 109
           G  +GY F  +      +QAI  LNG     KKL+V+ A    K
Sbjct: 297 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 340


>gi|6005926 U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform a
           [Homo sapiens]
          Length = 475

 Score = 43.9 bits (102), Expect = 8e-05
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 11  ENASILSEGSLQ-----EGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALE 65
           EN S+   G +        H+L+IG L   + +  + +LL  FG +K F+ +     +  
Sbjct: 240 ENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLV---KDSAT 296

Query: 66  GQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVK 109
           G  +GY F  +      +QAI  LNG     KKL+V+ A    K
Sbjct: 297 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 340


>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
           sapiens]
          Length = 448

 Score = 43.9 bits (102), Expect = 8e-05
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)

Query: 4   ETKTLPLENASI----LSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFH 59
           E KTLP  N  I        S  E  +L++G L+ + +E  + +L + FG +++   L  
Sbjct: 117 EQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTIL-- 174

Query: 60  KSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLAL---SKKLVVRWAHAQVKR 110
                +G  +G  FV + +  EA+ AI  L+G   +   S  LVV++A    +R
Sbjct: 175 --RGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKER 226



 Score = 27.7 bits (60), Expect = 6.2
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQA 85
           +L+IG +   + E  L  L ++FGK+ +   L        G  +G  F+ +  ++ A +A
Sbjct: 55  KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVL---KDRFTGMHKGCAFLTYCERESALKA 111

Query: 86  IQCLNGKLAL 95
              L+ +  L
Sbjct: 112 QSALHEQKTL 121


>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
           sapiens]
          Length = 485

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 12/115 (10%)

Query: 4   ETKTLP-----LENASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLF 58
           E KTLP     ++     SE       +L++G L+ + +E  +L+L Q FG + +   L 
Sbjct: 108 EQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVL- 166

Query: 59  HKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLAL---SKKLVVRWAHAQVKR 110
                 +G  +G  FV F +  EA+ AI  L+G   +   S  LVV++A    +R
Sbjct: 167 ---RGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKER 218



 Score = 31.2 bits (69), Expect = 0.56
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 23  EGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEA 82
           EG  L+I +L  +  +  L ++   FG +        ++     Q + + FV+F+    A
Sbjct: 398 EGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRA---TNQSKCFGFVSFDNPASA 454

Query: 83  EQAIQCLNGKLALSKKLVVR 102
           + AIQ +NG     K+L V+
Sbjct: 455 QAAIQAMNGFQIGMKRLKVQ 474


>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
          Length = 631

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAI 86
           +++ NLD  I    L   +  FG +   + +  ++G+     +GY FV+FET + AE+AI
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-----KGYGFVHFETHEAAERAI 155

Query: 87  QCLNGKLALSKKLVV 101
           + +NG L   +K+ V
Sbjct: 156 KKMNGMLLNGRKVFV 170



 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAI 86
           L++ NLD  I +  L K    FG +     +        G+ +G+ FV F + +EA +A+
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-----GRSKGFGFVCFSSPEEATKAV 350

Query: 87  QCLNGKLALSKKLVVRWAHAQVKRYDHNKND 117
             +NG++  +K L V  A  + +R  +  N+
Sbjct: 351 TEMNGRIVATKPLYVALAQRKEERQAYLTNE 381



 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 11/105 (10%)

Query: 22  QEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQE 81
           +E   ++I N    + +  L  L  KFG       +  +SG    + +G+ FV+FE  ++
Sbjct: 188 KEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG----KSKGFGFVSFERHED 243

Query: 82  AEQAIQCLNGKLALSKKLVVRWAHAQVKR-------YDHNKNDKI 119
           A++A+  +NGK    K++ V  A  +V+R       ++  K D+I
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRI 288



 Score = 34.7 bits (78), Expect = 0.051
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 15/106 (14%)

Query: 27  LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAI 86
           L++G+L P +TE  L +     G +            +      Y +VNF+  ++AE A+
Sbjct: 13  LYVGDLHPDVTEAMLYEKFSPAGPILSIRIC---RDLITSGSSNYAYVNFQHTKDAEHAL 69

Query: 87  QCLNGKLALSKKLVVRWAHAQ------------VKRYDHNKNDKIL 120
             +N  +   K + + W+               VK  D + N+K L
Sbjct: 70  DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKAL 115


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,340,111
Number of Sequences: 37866
Number of extensions: 291028
Number of successful extensions: 1046
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 713
Number of HSP's gapped (non-prelim): 360
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.