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Search of human proteins with 148886696
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148886696 surfactant protein A2 [Homo sapiens]
(248 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148886696 surfactant protein A2 [Homo sapiens] 530 e-151
gi|146149162 surfactant, pulmonary-associated protein A2 [Homo s... 530 e-151
gi|38888175 surfactant, pulmonary-associated protein A1B [Homo s... 516 e-147
gi|147903070 surfactant protein A1 [Homo sapiens] 508 e-144
gi|61699226 pulmonary surfactant-associated protein D precursor ... 154 7e-38
gi|4557739 soluble mannose-binding lectin precursor [Homo sapiens] 147 1e-35
gi|5453619 collectin sub-family member 10 [Homo sapiens] 112 4e-25
gi|13128972 collectin sub-family member 11 isoform a [Homo sapiens] 107 1e-23
gi|18641360 collectin sub-family member 12 [Homo sapiens] 103 2e-22
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 92 3e-19
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 92 3e-19
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 92 3e-19
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 92 4e-19
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 89 3e-18
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 89 3e-18
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 89 3e-18
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 89 3e-18
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 89 3e-18
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 89 3e-18
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens] 89 3e-18
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 89 3e-18
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens] 89 3e-18
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] 89 3e-18
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 89 3e-18
gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens] 89 3e-18
gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens] 89 3e-18
gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens] 89 3e-18
gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens] 89 3e-18
gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens] 89 3e-18
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 89 5e-18
>gi|148886696 surfactant protein A2 [Homo sapiens]
Length = 248
Score = 530 bits (1366), Expect = e-151
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MWLCPLALTLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPM 60
MWLCPLALTLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPM
Sbjct: 1 MWLCPLALTLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPM 60
Query: 61 GPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQ 120
GPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQ
Sbjct: 61 GPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQ 120
Query: 121 TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK 180
TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK
Sbjct: 121 TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK 180
Query: 181 YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY 240
YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY
Sbjct: 181 YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY 240
Query: 241 SRLTICEF 248
SRLTICEF
Sbjct: 241 SRLTICEF 248
>gi|146149162 surfactant, pulmonary-associated protein A2 [Homo
sapiens]
Length = 248
Score = 530 bits (1366), Expect = e-151
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MWLCPLALTLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPM 60
MWLCPLALTLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPM
Sbjct: 1 MWLCPLALTLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPM 60
Query: 61 GPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQ 120
GPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQ
Sbjct: 61 GPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQ 120
Query: 121 TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK 180
TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK
Sbjct: 121 TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK 180
Query: 181 YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY 240
YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY
Sbjct: 181 YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY 240
Query: 241 SRLTICEF 248
SRLTICEF
Sbjct: 241 SRLTICEF 248
>gi|38888175 surfactant, pulmonary-associated protein A1B [Homo
sapiens]
Length = 248
Score = 516 bits (1329), Expect = e-147
Identities = 240/248 (96%), Positives = 243/248 (97%)
Query: 1 MWLCPLALTLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPM 60
MWLCPLAL LILMAASGA CEVKDVCVGSPGIPGTPGSHGLPGRDGRDG+KGDPGPPGPM
Sbjct: 1 MWLCPLALNLILMAASGAVCEVKDVCVGSPGIPGTPGSHGLPGRDGRDGLKGDPGPPGPM 60
Query: 61 GPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQ 120
GPPGE PCPPGN+GLPGAPG+PGE GEKGE GERGPPGLPAHLDEELQATLHDFRHQILQ
Sbjct: 61 GPPGEMPCPPGNDGLPGAPGIPGECGEKGEPGERGPPGLPAHLDEELQATLHDFRHQILQ 120
Query: 121 TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK 180
TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK
Sbjct: 121 TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK 180
Query: 181 YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY 240
YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY
Sbjct: 181 YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY 240
Query: 241 SRLTICEF 248
SRLTICEF
Sbjct: 241 SRLTICEF 248
>gi|147903070 surfactant protein A1 [Homo sapiens]
Length = 245
Score = 508 bits (1309), Expect = e-144
Identities = 237/245 (96%), Positives = 240/245 (97%)
Query: 1 MWLCPLALTLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPM 60
MWLCPLAL LILMAASGA CEVKDVCVGSPGIPGTPGSHGLPGRDGRDG+KGDPGPPGPM
Sbjct: 1 MWLCPLALNLILMAASGAVCEVKDVCVGSPGIPGTPGSHGLPGRDGRDGLKGDPGPPGPM 60
Query: 61 GPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQ 120
GPPGE PCPPGN+GLPGAPG+PGE GEKGE GERGPPGLPAHLDEELQATLHDFRHQILQ
Sbjct: 61 GPPGEMPCPPGNDGLPGAPGIPGECGEKGEPGERGPPGLPAHLDEELQATLHDFRHQILQ 120
Query: 121 TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK 180
TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK
Sbjct: 121 TRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKK 180
Query: 181 YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY 240
YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY
Sbjct: 181 YNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLY 240
Query: 241 SRLTI 245
SRLTI
Sbjct: 241 SRLTI 245
>gi|61699226 pulmonary surfactant-associated protein D precursor
[Homo sapiens]
Length = 375
Score = 154 bits (389), Expect = 7e-38
Identities = 86/229 (37%), Positives = 124/229 (54%), Gaps = 7/229 (3%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC--PPGNNGLPGAPGVPGE 84
VG+PG+ G+ G+ GL G G GV G+ G PG G G P G+ G G PG+ G+
Sbjct: 147 VGAPGMQGSAGARGLAGPKGERGVPGERGVPGNTGAAGSAGAMGPQGSPGARGPPGLKGD 206
Query: 85 RGEKGEAGERGPPGLP--AHLDEELQATLHDFRH--QILQTRGALSLQGSIMTVGEKVFS 140
+G G+ G +G GLP A L ++++A +H + L + +VGEK+F
Sbjct: 207 KGIPGDKGAKGESGLPDVASLRQQVEALQGQVQHLQAAFSQYKKVELFPNGQSVGEKIFK 266
Query: 141 SNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKKYNTYAYVGLTEGPSPGDFRY 200
+ G F Q C +AGG++A PR+ EN A+ V N A++ +T+ + G F Y
Sbjct: 267 TAGFVKPFTEAQLLCTQAGGQLASPRSAAENAALQQLVVAKNEAAFLSMTDSKTEGKFTY 326
Query: 201 SDGTPVNYTNWYRGEP-AGRGKEQCVEMYTDGQWNDRNCLYSRLTICEF 248
G + Y+NW GEP G E CVE++T+G+WNDR C RL +CEF
Sbjct: 327 PTGESLVYSNWAPGEPNDDGGSEDCVEIFTNGKWNDRACGEKRLVVCEF 375
Score = 62.8 bits (151), Expect = 3e-10
Identities = 36/76 (47%), Positives = 42/76 (55%), Gaps = 10/76 (13%)
Query: 40 GLPGRDGRDG------VKGDPGPPGPMGP---PGETPCPPGNNGLPGAPGVPGERGEKGE 90
GLPGRDGRDG KGDPG PG G PG+ P G G G+ G PG +G+ G
Sbjct: 46 GLPGRDGRDGREGPRGEKGDPGLPGAAGQAGMPGQAG-PVGPKGDNGSVGEPGPKGDTGP 104
Query: 91 AGERGPPGLPAHLDEE 106
+G GPPG+P E
Sbjct: 105 SGPPGPPGVPGPAGRE 120
>gi|4557739 soluble mannose-binding lectin precursor [Homo sapiens]
Length = 248
Score = 147 bits (370), Expect = 1e-35
Identities = 88/252 (34%), Positives = 130/252 (51%), Gaps = 21/252 (8%)
Query: 5 PLALTLILMAASGAACEVKDVCVGSPGIPG--TPGSHGLPGRDGRDGVKGDPGPPGP--- 59
PL L ++ A+ +D P + +PG +G PG+DGRDG KG+ G PG
Sbjct: 8 PLLLLSMVAASYSETVTCEDAQKTCPAVIACSSPGINGFPGKDGRDGTKGEKGEPGQGLR 67
Query: 60 --MGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQ 117
GPPG+ PPGN G G+PG G++G+ G++ + G L A + LQ + +
Sbjct: 68 GLQGPPGKLG-PPGNPGPSGSPGPKGQKGDPGKSPD-GDSSLAASERKALQTEMARIKKW 125
Query: 118 ILQTRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASF 177
+ + G VG K F +NG+ +TF+ ++ C + +A PRN EN AI +
Sbjct: 126 LTFSLGK--------QVGNKFFLTNGEIMTFEKVKALCVKFQASVATPRNAAENGAIQNL 177
Query: 178 VKKYNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGK-EQCVEMYTDGQWNDR 236
+K+ A++G+T+ + G F G + YTNW GEP G E CV + +GQWND
Sbjct: 178 IKE---EAFLGITDEKTEGQFVDLTGNRLTYTNWNEGEPNNAGSDEDCVLLLKNGQWNDV 234
Query: 237 NCLYSRLTICEF 248
C S L +CEF
Sbjct: 235 PCSTSHLAVCEF 246
>gi|5453619 collectin sub-family member 10 [Homo sapiens]
Length = 277
Score = 112 bits (279), Expect = 4e-25
Identities = 71/224 (31%), Positives = 107/224 (47%), Gaps = 7/224 (3%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G PG G HG GR G G+KG+ G G G G+T P G G G G+ G GE
Sbjct: 53 GEKGDPGEEGKHGKVGRMGPKGIKGELGDMGDRGNIGKTG-PIGKKGDKGEKGLLGIPGE 111
Query: 88 KGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKVFSSNGQSIT 147
KG+AG G +L ++ + + + ++ I EK + +
Sbjct: 112 KGKAGTVCDCGRYRKFVGQLDISIARLKTSMKFVKNVIA---GIRETEEKFYYIVQEEKN 168
Query: 148 FDAIQEACARAGGRIAVPRNPEENEAIASFVKKYNTY-AYVGLTEGPSPGDFRYSDGTPV 206
+ C GG +A+P++ N IA +V K + ++G+ + G + ++D TP+
Sbjct: 169 YRESLTHCRIRGGMLAMPKDEAANTLIADYVAKSGFFRVFIGVNDLEREGQYMFTDNTPL 228
Query: 207 -NYTNWYRGEPAGR-GKEQCVEMYTDGQWNDRNCLYSRLTICEF 248
NY+NW GEP+ G E CVEM + G+WND C + +CEF
Sbjct: 229 QNYSNWNEGEPSDPYGHEDCVEMLSSGRWNDTECHLTMYFVCEF 272
Score = 35.0 bits (79), Expect = 0.061
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 70 PGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDE 105
PG G G G PGE G+ G+ G GP G+ L +
Sbjct: 46 PGPKGDDGEKGDPGEEGKHGKVGRMGPKGIKGELGD 81
>gi|13128972 collectin sub-family member 11 isoform a [Homo sapiens]
Length = 271
Score = 107 bits (267), Expect = 1e-23
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 15/244 (6%)
Query: 15 ASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNG 74
A AC V+ + G G G G G PGR GR G G+ G G G G G +G
Sbjct: 28 AGDDACSVQILVPGLKGDAGEKGDKGAPGRPGRVGPTGEKGDMGDKGQKGSV----GRHG 83
Query: 75 LPGAPGVPGERGEKGEAGERGP---PGLPAHLDEELQATLHDFRHQILQTRGALS-LQGS 130
G G GE+G+ G+ G GP PGLP +L+ + + +Q+ Q L ++ +
Sbjct: 84 KIGPIGSKGEKGDSGDIGPPGPNGEPGLPCEC-SQLRKAIGEMDNQVSQLTSELKFIKNA 142
Query: 131 IMTVGE---KVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKKYN-TYAY 186
+ V E K++ + + Q +C GG +++P++ N +A+++ + +
Sbjct: 143 VAGVRETESKIYLLVKEEKRYADAQLSCQGRGGTLSMPKDEAANGLMAAYLAQAGLARVF 202
Query: 187 VGLTEGPSPGDFRYSDGTPV-NYTNWYRGEPAGR-GKEQCVEMYTDGQWNDRNCLYSRLT 244
+G+ + G F YSD +P+ + W GEP +E CVEM G WND C +
Sbjct: 203 IGINDLEKEGAFVYSDHSPMRTFNKWRSGEPNNAYDEEDCVEMVASGGWNDVACHTTMYF 262
Query: 245 ICEF 248
+CEF
Sbjct: 263 MCEF 266
Score = 33.5 bits (75), Expect = 0.18
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 63 PGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHL 103
P P P G++ VPG +G+ GE G++G PG P +
Sbjct: 21 PSGHPQPAGDDACSVQILVPGLKGDAGEKGDKGAPGRPGRV 61
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 103 bits (256), Expect = 2e-22
Identities = 75/244 (30%), Positives = 98/244 (40%), Gaps = 36/244 (14%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGP---------MGPPG--------ETPCPP 70
GS G G GS G PG+ G G GDPGPPGP GPPG P P
Sbjct: 500 GSKGSQGPKGSRGSPGKPGPQGPSGDPGPPGPPGKEGLPGPQGPPGFQGLQGTVGEPGVP 559
Query: 71 GNNGLPGAPGVPGERGEKGEAGERGPPG--LPAHLDEELQATLHDFRHQILQTRGALSLQ 128
G GLPG PGVPG G KG G GP G +P L E D
Sbjct: 560 GPRGLPGLPGVPGMPGPKGPPGPPGPSGAVVPLALQNEPTPAPEDN-----------GCP 608
Query: 129 GSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKKYNTYAYVG 188
+K + + + F+ + C + EE + I + ++ ++G
Sbjct: 609 PHWKNFTDKCYYFSVEKEIFEDAKLFCEDKSSHLVFINTREEQQWIKKQMVGRESH-WIG 667
Query: 189 LTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGK-----EQCVEMYTDGQWNDRNCLYSRL 243
LT+ ++++ DGT +Y NW G+P G E C + GQWND C
Sbjct: 668 LTDSERENEWKWLDGTSPDYKNWKAGQPDNWGHGHGPGEDCAGLIYAGQWNDFQCEDVNN 727
Query: 244 TICE 247
ICE
Sbjct: 728 FICE 731
Score = 64.7 bits (156), Expect = 7e-11
Identities = 35/73 (47%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G G GS G PG G G KG+ G PGP GP GE P G G PG G G +G
Sbjct: 446 GPRGPRGDRGSQGPPGPTGNKGQKGEKGEPGPPGPAGERG-PIGPAGPPGERGGKGSKGS 504
Query: 88 KGEAGERGPPGLP 100
+G G RG PG P
Sbjct: 505 QGPKGSRGSPGKP 517
Score = 61.2 bits (147), Expect = 8e-10
Identities = 32/73 (43%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G PG G G G G G G G+ GP GP GPPGE G G G+ G G RG
Sbjct: 458 GPPGPTGNKGQKGEKGEPGPPGPAGERGPIGPAGPPGER----GGKGSKGSQGPKGSRGS 513
Query: 88 KGEAGERGPPGLP 100
G+ G +GP G P
Sbjct: 514 PGKPGPQGPSGDP 526
Score = 60.1 bits (144), Expect = 2e-09
Identities = 33/71 (46%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G PG G G G G G G KG G G GPPG P G G G G PGERG
Sbjct: 443 GPPGPRGPRGDRGSQGPPGPTGNKGQKGEKGEPGPPG----PAGERGPIGPAGPPGERGG 498
Query: 88 KGEAGERGPPG 98
KG G +GP G
Sbjct: 499 KGSKGSQGPKG 509
Score = 52.4 bits (124), Expect = 4e-07
Identities = 27/56 (48%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGP------PGETPCPPGNNGLP 76
VG PG+PG G GLPG G G KG PGPPGP G E P +NG P
Sbjct: 553 VGEPGVPGPRGLPGLPGVPGMPGPKGPPGPPGPSGAVVPLALQNEPTPAPEDNGCP 608
Score = 52.0 bits (123), Expect = 5e-07
Identities = 27/58 (46%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 41 LPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPG 98
L G G G +GD G GP GP G G G G PG PG GE+G G GPPG
Sbjct: 441 LQGPPGPRGPRGDRGSQGPPGPTGN----KGQKGEKGEPGPPGPAGERGPIGPAGPPG 494
Score = 44.7 bits (104), Expect = 8e-05
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 55 GPPGPMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDE 105
GPPGP GP G+ G+ G PG G KG+ GE+G PG P E
Sbjct: 443 GPPGPRGPRGDR----------GSQGPPGPTGNKGQKGEKGEPGPPGPAGE 483
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 92.4 bits (228), Expect = 3e-19
Identities = 43/82 (52%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
GSPG+PG G+ G PG G G+ G PGPPGP+G PG + P G++GL G PG+PG
Sbjct: 878 GSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPT 937
Query: 86 GEKGEAGERGPPGLPAHLDEEL 107
GEKG GE G PG P +D L
Sbjct: 938 GEKGSKGEPGLPGPPGPMDPNL 959
Score = 87.8 bits (216), Expect = 8e-18
Identities = 45/84 (53%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 23 KDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNN------GLP 76
KD G PGIPG PG G PG GRDG KG G GP GPPG PG G
Sbjct: 302 KDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNI 361
Query: 77 GAPGVPGERGEKGEAGERGPPGLP 100
G PG+PGE+GE+G G +GPPGLP
Sbjct: 362 GLPGLPGEKGERGFPGIQGPPGLP 385
Score = 83.6 bits (205), Expect = 1e-16
Identities = 43/81 (53%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE--TPCPPGNNGLPGAPGVPGER 85
G+PG PG PG GLPG G G G PGPPG MGPPG P P GN GL G +
Sbjct: 171 GNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGL----NFQGPK 226
Query: 86 GEKGEAGERGPPGLPAHLDEE 106
GEKGE G +GPPG P + E+
Sbjct: 227 GEKGEQGLQGPPGPPGQISEQ 247
Score = 82.8 bits (203), Expect = 3e-16
Identities = 43/95 (45%), Positives = 48/95 (50%), Gaps = 22/95 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE-----------------TPCPP 70
G PG+PGTPG+ G PG G G G PGP G GPPG P PP
Sbjct: 1104 GLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPP 1163
Query: 71 GNNGLPGAPGVPGERGEKGEAGE-----RGPPGLP 100
G G PG G+PG G+KGE G+ GPPGLP
Sbjct: 1164 GEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLP 1198
Score = 82.4 bits (202), Expect = 3e-16
Identities = 40/72 (55%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-ETPCPPGNNGLPGAPGVPGERG 86
G PGIPG PG+ G PGR G +G G PG PGP G PG P PPG GLPG G G +G
Sbjct: 716 GFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKG 775
Query: 87 EKGEAGERGPPG 98
++G G GPPG
Sbjct: 776 DRGFPGPPGPPG 787
Score = 80.5 bits (197), Expect = 1e-15
Identities = 46/89 (51%), Positives = 49/89 (55%), Gaps = 13/89 (14%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPG--PMGPPGETPCP-----PGNNGLPGAPG 80
G PG PG PG G PG G G KGDPGPPG GPPGE P PG G PG+PG
Sbjct: 822 GPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPG 881
Query: 81 VPGER------GEKGEAGERGPPGLPAHL 103
+PG+ G KGE G GPPG P L
Sbjct: 882 LPGKAGASGFPGTKGEMGMMGPPGPPGPL 910
Score = 80.5 bits (197), Expect = 1e-15
Identities = 40/74 (54%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G PG+PG G GLPG G G+KG G PG G PG TP G GLPG PG PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPG-TPGAKGQPGLPGFPGTPGPPG 1131
Query: 87 EKGEAGERGPPGLP 100
KG +G G PGLP
Sbjct: 1132 PKGISGPPGNPGLP 1145
Score = 78.6 bits (192), Expect = 5e-15
Identities = 41/84 (48%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGP---MGPPG--------ETPCPPGNNGLP 76
G PG+PG PG G PG G+ G G PGPPGP GPPG P PG++G P
Sbjct: 57 GHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAP 116
Query: 77 GAPGVPGERGEKGEAGERGPPGLP 100
G G+PG G KGE G G PG P
Sbjct: 117 GPQGIPGCNGTKGERGFPGSPGFP 140
Score = 77.0 bits (188), Expect = 1e-14
Identities = 39/79 (49%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE----TPCPPGNNGLPGAPGVPG 83
G G+PG PG+ GLPG G G G PG GP GPPG P GN G G PG PG
Sbjct: 1205 GDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPG 1264
Query: 84 ERGEKGEAGERGPPGLPAH 102
G +G G GPPGLP +
Sbjct: 1265 PTGFQGLPGPEGPPGLPGN 1283
Score = 76.6 bits (187), Expect = 2e-14
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 6/75 (8%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G+PG+PG PG G PG G G G PGP G GPPG P G G PG+PG+PG++G+
Sbjct: 1009 GNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPG----PSGVPGQPGSPGLPGQKGD 1064
Query: 88 KGEAG--ERGPPGLP 100
KG+ G G PGLP
Sbjct: 1065 KGDPGISSIGLPGLP 1079
Score = 75.9 bits (185), Expect = 3e-14
Identities = 42/84 (50%), Positives = 49/84 (58%), Gaps = 10/84 (11%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP-------GPMGPPGETPCPPGNNGLP 76
++C PG PG PGS G G G GVKGD G G GPPG+ P PG G P
Sbjct: 449 EIC--EPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQ-PGLPGLPGPP 505
Query: 77 GAPGVPGERGEKGEAGERGPPGLP 100
G+ G PG++GEKG+AG GP GLP
Sbjct: 506 GSLGFPGQKGEKGQAGATGPKGLP 529
Score = 75.5 bits (184), Expect = 4e-14
Identities = 47/94 (50%), Positives = 49/94 (52%), Gaps = 17/94 (18%)
Query: 23 KDVCVGSPGIPGTPGSHGLPGRDGRDGVKGD-----PGPPGPMGPPGETPCPPGN----- 72
+D VG PG PG PG GLPG G G G PGPPGP G PG P PPG
Sbjct: 673 RDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPG-IPGPPGAPGTPG 731
Query: 73 ----NGLPGAPGVPGERGEKGEA--GERGPPGLP 100
G PG PG PG +GE G A G GPPGLP
Sbjct: 732 RIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLP 765
Score = 75.5 bits (184), Expect = 4e-14
Identities = 40/75 (53%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 28 GSPG--IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGER 85
G PG +PG PG GLPG G G KGD G PGP GPPG T GL G PG G+
Sbjct: 749 GEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRT-------GLDGLPGPKGDV 801
Query: 86 GEKGEAGERGPPGLP 100
G G+ G GPPGLP
Sbjct: 802 GPNGQPGPMGPPGLP 816
Score = 75.1 bits (183), Expect = 5e-14
Identities = 40/80 (50%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 28 GSPGIPGTPGSHG---LPGRDGRDGVKGDPGPPGPMGPPG----ETPCPPGNNGLPGAPG 80
G PG+PG PG G LPG G G G PG PG G PG P PPG G PG PG
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPG 722
Query: 81 VPGERGEKGEAGERGPPGLP 100
PG G G G GPPG P
Sbjct: 723 PPGAPGTPGRIGLEGPPGPP 742
Score = 74.7 bits (182), Expect = 7e-14
Identities = 43/83 (51%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGV---KGDPGP---PGPMGPPG----ETPCPPGNNGLP 76
+G G G PG G PGR G DG+ KGD GP PGPMGPPG PPG G+P
Sbjct: 771 LGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIP 830
Query: 77 GAPGVPGERGEKGEAGERGPPGL 99
G G PG G GE G+ GPPGL
Sbjct: 831 GPIGQPGLHGIPGEKGDPGPPGL 853
Score = 72.8 bits (177), Expect = 3e-13
Identities = 39/87 (44%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 28 GSPGIPGTPGS--------HGLPGRDGRDGVKG------DPGPPGPMGPPGETPCPPGNN 73
G+PG+PG PG+ G PG G G++G PG PGP G PG+T PG
Sbjct: 606 GNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKP 665
Query: 74 GLPGAPGVPGERGEKGEAGERGPPGLP 100
GLPG PG G+ G G+ G G PGLP
Sbjct: 666 GLPGNPGRDGDVGLPGDPGLPGQPGLP 692
Score = 72.4 bits (176), Expect = 3e-13
Identities = 41/91 (45%), Positives = 48/91 (52%), Gaps = 15/91 (16%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG-------VKGDPGPPGPMGPPGETPCP--PGNNGLPGA 78
G PGIPG PG+ G PG G G +KGD G G G PG P PG +GLPG
Sbjct: 527 GLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGL 586
Query: 79 PGVPGE------RGEKGEAGERGPPGLPAHL 103
PG GE +GE+G G G PGLP ++
Sbjct: 587 PGPKGEPGGITFKGERGPPGNPGLPGLPGNI 617
Score = 72.4 bits (176), Expect = 3e-13
Identities = 38/75 (50%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGE--R 85
G+PG PG PG G G G G+ G+PG PGP G PG PG G PG PG PG
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGF-PGVQGPPGPPGSPGPALE 1248
Query: 86 GEKGEAGERGPPGLP 100
G KG G +GPPG P
Sbjct: 1249 GPKGNPGPQGPPGRP 1263
Score = 72.0 bits (175), Expect = 4e-13
Identities = 38/81 (46%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE--------TPCPPGNNGLPGAP 79
G PG GT G G PG G G++G PGPPG G GE P P GN G PG P
Sbjct: 120 GIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPP 179
Query: 80 GVPGERGEKGEAGERGPPGLP 100
G+ G G G G GPPG P
Sbjct: 180 GIQGLPGPTGIPGPIGPPGPP 200
Score = 72.0 bits (175), Expect = 4e-13
Identities = 38/80 (47%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGE--- 84
G PG+PG PG G G G+ G KG G GP G PG P PG G PG+ G PG+
Sbjct: 494 GQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPG-IPGAPGAPGFPGSKGEPGDILT 552
Query: 85 ----RGEKGEAGERGPPGLP 100
+G+KGE G G PGLP
Sbjct: 553 FPGMKGDKGELGSPGAPGLP 572
Score = 72.0 bits (175), Expect = 4e-13
Identities = 41/85 (48%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAP------- 79
+GSPG PG PG G PG+DG G+ G G PG + GE PPGN GLPG P
Sbjct: 563 LGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERG-PPGNPGLPGLPGNIGPMG 621
Query: 80 ----GVPGERGEKGEAGERGPPGLP 100
G PG GEKG G G PG P
Sbjct: 622 PPGFGPPGPVGEKGIQGVAGNPGQP 646
Score = 71.6 bits (174), Expect = 6e-13
Identities = 39/81 (48%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--------PGNNGLPGAP 79
G PGIPG PG GLPG G G+ PGP GP G PG P G+ GLPG P
Sbjct: 1382 GPPGIPGQPGLKGLPGPQGPQGL---PGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQP 1438
Query: 80 GVPGERGEKGEAGERGPPGLP 100
G G G G G +GPPG P
Sbjct: 1439 GTRGLDGPPGPDGLQGPPGPP 1459
Score = 71.2 bits (173), Expect = 8e-13
Identities = 47/109 (43%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 6 LALTLILMAASGAAC---EVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGP 62
LAL+L A AAC C S GI G G G PG +G G+ G PGP GP GP
Sbjct: 15 LALSLWGQPAEAAACYGCSPGSKCDCS-GIKGEKGERGFPGLEGHPGLPGFPGPEGPPGP 73
Query: 63 PGE-----TPCPPGNN------GLPGAPGVPGERGEKGEAGERGPPGLP 100
G+ P PPG GLPG PG PG G G G GP G+P
Sbjct: 74 RGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIP 122
Score = 71.2 bits (173), Expect = 8e-13
Identities = 37/73 (50%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG--ETPCPPGNNGLPGAPGVPGER 85
G G PG PG G+ G G G+ GDPG PG G PG P P GN GLPG PG+ G
Sbjct: 964 GEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPP 1023
Query: 86 GEKGEAGERGPPG 98
G KG G+ G PG
Sbjct: 1024 GLKGTIGDMGFPG 1036
Score = 70.9 bits (172), Expect = 1e-12
Identities = 41/87 (47%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 26 CVGSPGIPGTPGSHGLPGRDGR------DGVKGDPGP------PGPMGPPGETPCPPGNN 73
C G+ G G PGS G PG G G+KG+PG PGP G PG P PPG
Sbjct: 124 CNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPG-YPGPPGIQ 182
Query: 74 GLPGAPGVPGERGEKGEAGERGPPGLP 100
GLPG G+PG G G G GPPG P
Sbjct: 183 GLPGPTGIPGPIGPPGPPGLMGPPGPP 209
Score = 70.9 bits (172), Expect = 1e-12
Identities = 37/79 (46%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE--TPCPPGNN----GLPGAPGV 81
G PG+PG PG G+ G G G G G PG +GPPG P P G + G G PG+
Sbjct: 1327 GDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGI 1386
Query: 82 PGERGEKGEAGERGPPGLP 100
PG+ G KG G +GP GLP
Sbjct: 1387 PGQPGLKGLPGPQGPQGLP 1405
Score = 70.9 bits (172), Expect = 1e-12
Identities = 37/82 (45%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 28 GSPGIPGTPGSHGLPGR---DGRDGVKGDPGPPGPMGPPGET------PCPPGNNGLPGA 78
G PG PG G G+PG +G G+ G PGPPG GP G++ PPG G PG
Sbjct: 1333 GVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGL 1392
Query: 79 PGVPGERGEKGEAGERGPPGLP 100
G+PG +G +G G GPPG P
Sbjct: 1393 KGLPGPQGPQGLPGPTGPPGDP 1414
Score = 70.5 bits (171), Expect = 1e-12
Identities = 39/79 (49%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGER- 85
+G G PG PG G+PGR G G+KGD G G G PG T G+ G PG PG PG
Sbjct: 898 MGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTG-EKGSKGEPGLPGPPGPMD 956
Query: 86 ----GEKGEAGERGPPGLP 100
G KGE GE G PG+P
Sbjct: 957 PNLLGSKGEKGEPGLPGIP 975
Score = 70.5 bits (171), Expect = 1e-12
Identities = 36/75 (48%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC--PPGNNGLPGAPGVPGER 85
G+ GI G G+ G PG G G+KGD GPPG G PG G+ GLPG PG PG +
Sbjct: 1282 GNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMK 1341
Query: 86 GEKGEAGERGPPGLP 100
G G G GP G P
Sbjct: 1342 GPSGVPGSAGPEGEP 1356
Score = 70.1 bits (170), Expect = 2e-12
Identities = 42/94 (44%), Positives = 46/94 (48%), Gaps = 16/94 (17%)
Query: 28 GSPGIPGT----------PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPG 77
G PGIPG PG GLPG GRDG G PG PG G PG P PG+ G PG
Sbjct: 644 GQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPG-LPGIPGSKGEPG 702
Query: 78 APGV-----PGERGEKGEAGERGPPGLPAHLDEE 106
PG+ PG +G G G G PG P + E
Sbjct: 703 IPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLE 736
Score = 70.1 bits (170), Expect = 2e-12
Identities = 42/109 (38%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGP------PGPMGPPGETPCP------------ 69
G PG PG PG G+ G G G+ G+PGP PG GPPGE P
Sbjct: 1122 GFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQK 1181
Query: 70 --PGNNGL--PGAPGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDF 114
PG G PG PG+PG G+KG+ G G PG P + + H F
Sbjct: 1182 GEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGF 1230
Score = 69.7 bits (169), Expect = 2e-12
Identities = 35/73 (47%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G PG+ G G GLPG G+ G+ G PG PGP GP G P PG G PG G G+
Sbjct: 973 GIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDM 1032
Query: 86 GEKGEAGERGPPG 98
G G G GPPG
Sbjct: 1033 GFPGPQGVEGPPG 1045
Score = 69.3 bits (168), Expect = 3e-12
Identities = 41/92 (44%), Positives = 48/92 (52%), Gaps = 20/92 (21%)
Query: 28 GSPGIPGT------PGSHGLPGRDGRDGVKGDPGPP---------GPMGPPGETPCPPGN 72
G PG+PG PG G PGR G +G+KGDPG P GP G PG P G
Sbjct: 1297 GLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAG-PEGE 1355
Query: 73 NGLPGAPGVPGERGEKGEA----GERGPPGLP 100
GL G PG PG G G++ G+ GPPG+P
Sbjct: 1356 PGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIP 1387
Score = 68.6 bits (166), Expect = 5e-12
Identities = 37/86 (43%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G PGI PG GL G+ G G+ G PGP GP PP + C PG G PG+PG G +GE
Sbjct: 412 GPPGI-SIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGE 470
Query: 88 KGEAGER-------------GPPGLP 100
+G G++ GPPG P
Sbjct: 471 QGVKGDKGDTCFNCIGTGISGPPGQP 496
Score = 67.8 bits (164), Expect = 8e-12
Identities = 44/120 (36%), Positives = 47/120 (39%), Gaps = 53/120 (44%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGP---------------------------- 59
G PG+PG PG G PGRDG G KGD GPPGP
Sbjct: 310 GIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGE 369
Query: 60 ---------------MGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGE-----RGPPGL 99
GPPG P PG PG PGERG+KG+ G GPPGL
Sbjct: 370 KGERGFPGIQGPPGLPGPPGAAVMGP-----PGPPGFPGERGQKGDEGPPGISIPGPPGL 424
Score = 67.8 bits (164), Expect = 8e-12
Identities = 38/90 (42%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 27 VGSPGIPGT------PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP----------P 70
+G PG+ GT PG G+ G G GV G PG PG G G+ P P
Sbjct: 1020 IGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLP 1079
Query: 71 GNNGLPGAPGVPGERGEKGEAGERGPPGLP 100
G G PG PG PG G KG G+ G PGLP
Sbjct: 1080 GPKGEPGLPGYPGNPGIKGSVGDPGLPGLP 1109
Score = 67.0 bits (162), Expect = 1e-11
Identities = 37/73 (50%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G PG PG+PG L G G G +G PG PGP G G PG G PG PG G +GE
Sbjct: 1235 GPPGPPGSPGP-ALEGPKGNPGPQGPPGRPGPTGFQG----LPGPEGPPGLPGNGGIKGE 1289
Query: 88 KGEAGERGPPGLP 100
KG G+ G PGLP
Sbjct: 1290 KGNPGQPGLPGLP 1302
Score = 67.0 bits (162), Expect = 1e-11
Identities = 40/98 (40%), Positives = 48/98 (48%), Gaps = 29/98 (29%)
Query: 27 VGSPGIPGTPGSHG-------------LPGRDGRDGVKGDPGP---PGPMGPPGETPCPP 70
+G PG PG PG G +PG+ G G+ G GP PGP GPPG+ P
Sbjct: 1359 IGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGD----P 1414
Query: 71 GNNGLP---------GAPGVPGERGEKGEAGERGPPGL 99
G NGLP G PG+PG+ G +G G GP GL
Sbjct: 1415 GRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGL 1452
Score = 65.9 bits (159), Expect = 3e-11
Identities = 34/76 (44%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G PG+PG PG+ GLPG G DG G G PG G GE G PG+PG PG +G
Sbjct: 93 GPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGE-------RGFPGSPGFPGLQGP 145
Query: 88 KGEAGERGPPGLPAHL 103
G G G G P +
Sbjct: 146 PGPPGIPGMKGEPGSI 161
Score = 65.9 bits (159), Expect = 3e-11
Identities = 37/76 (48%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 28 GSPGIPGTPG--SHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPG 83
G PG+PG PG L G G G G PG PG GP G P PG GL G PG+PG
Sbjct: 944 GEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPG 1003
Query: 84 ERGEKGEAGERGPPGL 99
G KG G G PGL
Sbjct: 1004 PPGPKGNPGLPGQPGL 1019
Score = 65.5 bits (158), Expect = 4e-11
Identities = 38/91 (41%), Positives = 43/91 (47%), Gaps = 18/91 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPG-------- 77
G PG+PG PGS G PG+ G G G GP G G PG P PG+ G PG
Sbjct: 497 GLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGM 556
Query: 78 --------APGVPGERGEKGEAGERGPPGLP 100
+PG PG G G G+ G PGLP
Sbjct: 557 KGDKGELGSPGAPGLPGLPGTPGQDGLPGLP 587
Score = 64.7 bits (156), Expect = 7e-11
Identities = 41/101 (40%), Positives = 49/101 (48%), Gaps = 26/101 (25%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD---------------PGPPGP---MGPPG-ETPC 68
G PG+PGTPG GLPG G G G PG PG MGPPG P
Sbjct: 570 GLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPG 629
Query: 69 PPGNNGL------PGAPGVPGERGEKGEA-GERGPPGLPAH 102
P G G+ PG PG+PG +G+ G+ + G PGLP +
Sbjct: 630 PVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGN 670
Score = 64.7 bits (156), Expect = 7e-11
Identities = 34/75 (45%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G PG PG G GLPG +G G+ G+ G G G PG+ P PG G G PG+ G
Sbjct: 1258 GPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNP 1317
Query: 86 GEKGEAGERGPPGLP 100
G G G +G PGLP
Sbjct: 1318 GRPGLNGMKGDPGLP 1332
Score = 64.3 bits (155), Expect = 9e-11
Identities = 35/80 (43%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 28 GSPGIPGTPGSHGLP-------GRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPG 80
G PG PG P G G G +G PGPPG GPPG P G G G G
Sbjct: 236 GPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGP---PGGEKGEKGEQG 292
Query: 81 VPGERGEKGEAGERGPPGLP 100
PG+RG+ G+ GE G PG+P
Sbjct: 293 EPGKRGKPGKDGENGQPGIP 312
Score = 64.3 bits (155), Expect = 9e-11
Identities = 34/73 (46%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G+PG G PG G G G G +G PG PG G GE GN G PG PG+PG +G+
Sbjct: 1252 GNPGPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGE----KGNPGQPGLPGLPGLKGD 1307
Query: 88 KGEAGERGPPGLP 100
+G G +G PG P
Sbjct: 1308 QGPPGLQGNPGRP 1320
Score = 63.5 bits (153), Expect = 2e-10
Identities = 42/108 (38%), Positives = 49/108 (45%), Gaps = 36/108 (33%)
Query: 27 VGSPGIP---GTPGSHGLPGRDGRDGV--------KGDPGPPGPMGPPGE---------- 65
+G PG P G PG GLPG G G+ KG+ G GP GPPG+
Sbjct: 194 IGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDV 253
Query: 66 --------------TPCPPGNNGLPGAP-GVPGERGEKGEAGERGPPG 98
P PPG G PG P G GE+GE+GE G+RG PG
Sbjct: 254 EFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPG 301
Score = 62.8 bits (151), Expect = 3e-10
Identities = 32/56 (57%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
G G PG PG +GLPG DG G KGDPG PG G G PPG +GL G PG PG
Sbjct: 1406 GPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRG-LDGPPGPDGLQGPPGPPG 1460
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 92.4 bits (228), Expect = 3e-19
Identities = 43/82 (52%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
GSPG+PG G+ G PG G G+ G PGPPGP+G PG + P G++GL G PG+PG
Sbjct: 878 GSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPT 937
Query: 86 GEKGEAGERGPPGLPAHLDEEL 107
GEKG GE G PG P +D L
Sbjct: 938 GEKGSKGEPGLPGPPGPMDPNL 959
Score = 87.8 bits (216), Expect = 8e-18
Identities = 45/84 (53%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 23 KDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNN------GLP 76
KD G PGIPG PG G PG GRDG KG G GP GPPG PG G
Sbjct: 302 KDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNI 361
Query: 77 GAPGVPGERGEKGEAGERGPPGLP 100
G PG+PGE+GE+G G +GPPGLP
Sbjct: 362 GLPGLPGEKGERGFPGIQGPPGLP 385
Score = 83.6 bits (205), Expect = 1e-16
Identities = 43/81 (53%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE--TPCPPGNNGLPGAPGVPGER 85
G+PG PG PG GLPG G G G PGPPG MGPPG P P GN GL G +
Sbjct: 171 GNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGL----NFQGPK 226
Query: 86 GEKGEAGERGPPGLPAHLDEE 106
GEKGE G +GPPG P + E+
Sbjct: 227 GEKGEQGLQGPPGPPGQISEQ 247
Score = 82.8 bits (203), Expect = 3e-16
Identities = 43/95 (45%), Positives = 48/95 (50%), Gaps = 22/95 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE-----------------TPCPP 70
G PG+PGTPG+ G PG G G G PGP G GPPG P PP
Sbjct: 1104 GLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPP 1163
Query: 71 GNNGLPGAPGVPGERGEKGEAGE-----RGPPGLP 100
G G PG G+PG G+KGE G+ GPPGLP
Sbjct: 1164 GEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLP 1198
Score = 82.4 bits (202), Expect = 3e-16
Identities = 40/72 (55%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-ETPCPPGNNGLPGAPGVPGERG 86
G PGIPG PG+ G PGR G +G G PG PGP G PG P PPG GLPG G G +G
Sbjct: 716 GFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKG 775
Query: 87 EKGEAGERGPPG 98
++G G GPPG
Sbjct: 776 DRGFPGPPGPPG 787
Score = 80.5 bits (197), Expect = 1e-15
Identities = 46/89 (51%), Positives = 49/89 (55%), Gaps = 13/89 (14%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPG--PMGPPGETPCP-----PGNNGLPGAPG 80
G PG PG PG G PG G G KGDPGPPG GPPGE P PG G PG+PG
Sbjct: 822 GPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPG 881
Query: 81 VPGER------GEKGEAGERGPPGLPAHL 103
+PG+ G KGE G GPPG P L
Sbjct: 882 LPGKAGASGFPGTKGEMGMMGPPGPPGPL 910
Score = 80.5 bits (197), Expect = 1e-15
Identities = 40/74 (54%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G PG+PG G GLPG G G+KG G PG G PG TP G GLPG PG PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPG-TPGAKGQPGLPGFPGTPGPPG 1131
Query: 87 EKGEAGERGPPGLP 100
KG +G G PGLP
Sbjct: 1132 PKGISGPPGNPGLP 1145
Score = 78.6 bits (192), Expect = 5e-15
Identities = 41/84 (48%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGP---MGPPG--------ETPCPPGNNGLP 76
G PG+PG PG G PG G+ G G PGPPGP GPPG P PG++G P
Sbjct: 57 GHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAP 116
Query: 77 GAPGVPGERGEKGEAGERGPPGLP 100
G G+PG G KGE G G PG P
Sbjct: 117 GPQGIPGCNGTKGERGFPGSPGFP 140
Score = 77.4 bits (189), Expect = 1e-14
Identities = 44/89 (49%), Positives = 48/89 (53%), Gaps = 16/89 (17%)
Query: 28 GSPGIPGTPGSHGLPGRDGR------DGVKGDPGPPGPMGPPGETP-------CPPGNNG 74
G G+PG PG+ GLPG G GV+G PGPPG GP E P PPG G
Sbjct: 1205 GDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPG 1264
Query: 75 LP---GAPGVPGERGEKGEAGERGPPGLP 100
LP G PG+PG G KGE G G PGLP
Sbjct: 1265 LPGPEGPPGLPGNGGIKGEKGNPGQPGLP 1293
Score = 76.6 bits (187), Expect = 2e-14
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 6/75 (8%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G+PG+PG PG G PG G G G PGP G GPPG P G G PG+PG+PG++G+
Sbjct: 1009 GNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPG----PSGVPGQPGSPGLPGQKGD 1064
Query: 88 KGEAG--ERGPPGLP 100
KG+ G G PGLP
Sbjct: 1065 KGDPGISSIGLPGLP 1079
Score = 75.9 bits (185), Expect = 3e-14
Identities = 42/84 (50%), Positives = 49/84 (58%), Gaps = 10/84 (11%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP-------GPMGPPGETPCPPGNNGLP 76
++C PG PG PGS G G G GVKGD G G GPPG+ P PG G P
Sbjct: 449 EIC--EPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQ-PGLPGLPGPP 505
Query: 77 GAPGVPGERGEKGEAGERGPPGLP 100
G+ G PG++GEKG+AG GP GLP
Sbjct: 506 GSLGFPGQKGEKGQAGATGPKGLP 529
Score = 75.5 bits (184), Expect = 4e-14
Identities = 47/94 (50%), Positives = 49/94 (52%), Gaps = 17/94 (18%)
Query: 23 KDVCVGSPGIPGTPGSHGLPGRDGRDGVKGD-----PGPPGPMGPPGETPCPPGN----- 72
+D VG PG PG PG GLPG G G G PGPPGP G PG P PPG
Sbjct: 673 RDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPG-IPGPPGAPGTPG 731
Query: 73 ----NGLPGAPGVPGERGEKGEA--GERGPPGLP 100
G PG PG PG +GE G A G GPPGLP
Sbjct: 732 RIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLP 765
Score = 75.5 bits (184), Expect = 4e-14
Identities = 40/75 (53%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 28 GSPG--IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGER 85
G PG +PG PG GLPG G G KGD G PGP GPPG T GL G PG G+
Sbjct: 749 GEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRT-------GLDGLPGPKGDV 801
Query: 86 GEKGEAGERGPPGLP 100
G G+ G GPPGLP
Sbjct: 802 GPNGQPGPMGPPGLP 816
Score = 75.1 bits (183), Expect = 5e-14
Identities = 40/80 (50%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 28 GSPGIPGTPGSHG---LPGRDGRDGVKGDPGPPGPMGPPG----ETPCPPGNNGLPGAPG 80
G PG+PG PG G LPG G G G PG PG G PG P PPG G PG PG
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPG 722
Query: 81 VPGERGEKGEAGERGPPGLP 100
PG G G G GPPG P
Sbjct: 723 PPGAPGTPGRIGLEGPPGPP 742
Score = 74.7 bits (182), Expect = 7e-14
Identities = 43/83 (51%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGV---KGDPGP---PGPMGPPG----ETPCPPGNNGLP 76
+G G G PG G PGR G DG+ KGD GP PGPMGPPG PPG G+P
Sbjct: 771 LGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIP 830
Query: 77 GAPGVPGERGEKGEAGERGPPGL 99
G G PG G GE G+ GPPGL
Sbjct: 831 GPIGQPGLHGIPGEKGDPGPPGL 853
Score = 72.8 bits (177), Expect = 3e-13
Identities = 39/87 (44%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 28 GSPGIPGTPGS--------HGLPGRDGRDGVKG------DPGPPGPMGPPGETPCPPGNN 73
G+PG+PG PG+ G PG G G++G PG PGP G PG+T PG
Sbjct: 606 GNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKP 665
Query: 74 GLPGAPGVPGERGEKGEAGERGPPGLP 100
GLPG PG G+ G G+ G G PGLP
Sbjct: 666 GLPGNPGRDGDVGLPGDPGLPGQPGLP 692
Score = 72.4 bits (176), Expect = 3e-13
Identities = 41/91 (45%), Positives = 48/91 (52%), Gaps = 15/91 (16%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG-------VKGDPGPPGPMGPPGETPCP--PGNNGLPGA 78
G PGIPG PG+ G PG G G +KGD G G G PG P PG +GLPG
Sbjct: 527 GLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGL 586
Query: 79 PGVPGE------RGEKGEAGERGPPGLPAHL 103
PG GE +GE+G G G PGLP ++
Sbjct: 587 PGPKGEPGGITFKGERGPPGNPGLPGLPGNI 617
Score = 72.4 bits (176), Expect = 3e-13
Identities = 38/75 (50%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGE--R 85
G+PG PG PG G G G G+ G+PG PGP G PG PG G PG PG PG
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGF-PGVQGPPGPPGSPGPALE 1248
Query: 86 GEKGEAGERGPPGLP 100
G KG G +GPPG P
Sbjct: 1249 GPKGNPGPQGPPGRP 1263
Score = 72.0 bits (175), Expect = 4e-13
Identities = 38/81 (46%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE--------TPCPPGNNGLPGAP 79
G PG GT G G PG G G++G PGPPG G GE P P GN G PG P
Sbjct: 120 GIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPP 179
Query: 80 GVPGERGEKGEAGERGPPGLP 100
G+ G G G G GPPG P
Sbjct: 180 GIQGLPGPTGIPGPIGPPGPP 200
Score = 72.0 bits (175), Expect = 4e-13
Identities = 38/80 (47%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGE--- 84
G PG+PG PG G G G+ G KG G GP G PG P PG G PG+ G PG+
Sbjct: 494 GQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPG-IPGAPGAPGFPGSKGEPGDILT 552
Query: 85 ----RGEKGEAGERGPPGLP 100
+G+KGE G G PGLP
Sbjct: 553 FPGMKGDKGELGSPGAPGLP 572
Score = 72.0 bits (175), Expect = 4e-13
Identities = 41/85 (48%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAP------- 79
+GSPG PG PG G PG+DG G+ G G PG + GE PPGN GLPG P
Sbjct: 563 LGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERG-PPGNPGLPGLPGNIGPMG 621
Query: 80 ----GVPGERGEKGEAGERGPPGLP 100
G PG GEKG G G PG P
Sbjct: 622 PPGFGPPGPVGEKGIQGVAGNPGQP 646
Score = 71.6 bits (174), Expect = 6e-13
Identities = 39/81 (48%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--------PGNNGLPGAP 79
G PGIPG PG GLPG G G+ PGP GP G PG P G+ GLPG P
Sbjct: 1376 GPPGIPGQPGLKGLPGPQGPQGL---PGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQP 1432
Query: 80 GVPGERGEKGEAGERGPPGLP 100
G G G G G +GPPG P
Sbjct: 1433 GTRGLDGPPGPDGLQGPPGPP 1453
Score = 71.2 bits (173), Expect = 8e-13
Identities = 47/109 (43%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 6 LALTLILMAASGAAC---EVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGP 62
LAL+L A AAC C S GI G G G PG +G G+ G PGP GP GP
Sbjct: 15 LALSLWGQPAEAAACYGCSPGSKCDCS-GIKGEKGERGFPGLEGHPGLPGFPGPEGPPGP 73
Query: 63 PGE-----TPCPPGNN------GLPGAPGVPGERGEKGEAGERGPPGLP 100
G+ P PPG GLPG PG PG G G G GP G+P
Sbjct: 74 RGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIP 122
Score = 71.2 bits (173), Expect = 8e-13
Identities = 37/73 (50%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG--ETPCPPGNNGLPGAPGVPGER 85
G G PG PG G+ G G G+ GDPG PG G PG P P GN GLPG PG+ G
Sbjct: 964 GEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPP 1023
Query: 86 GEKGEAGERGPPG 98
G KG G+ G PG
Sbjct: 1024 GLKGTIGDMGFPG 1036
Score = 71.2 bits (173), Expect = 8e-13
Identities = 41/90 (45%), Positives = 44/90 (48%), Gaps = 17/90 (18%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPP---------GPMGPPG--ETPCPPGNN--- 73
G PG+PG G GLPG G G KG+PG P G GPPG P PG N
Sbjct: 1261 GRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMK 1320
Query: 74 ---GLPGAPGVPGERGEKGEAGERGPPGLP 100
GLPG PG PG +G G G GP G P
Sbjct: 1321 GDPGLPGVPGFPGMKGPSGVPGSAGPEGEP 1350
Score = 70.9 bits (172), Expect = 1e-12
Identities = 41/87 (47%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 26 CVGSPGIPGTPGSHGLPGRDGR------DGVKGDPGP------PGPMGPPGETPCPPGNN 73
C G+ G G PGS G PG G G+KG+PG PGP G PG P PPG
Sbjct: 124 CNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPG-YPGPPGIQ 182
Query: 74 GLPGAPGVPGERGEKGEAGERGPPGLP 100
GLPG G+PG G G G GPPG P
Sbjct: 183 GLPGPTGIPGPIGPPGPPGLMGPPGPP 209
Score = 70.9 bits (172), Expect = 1e-12
Identities = 37/79 (46%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE--TPCPPGNN----GLPGAPGV 81
G PG+PG PG G+ G G G G G PG +GPPG P P G + G G PG+
Sbjct: 1321 GDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGI 1380
Query: 82 PGERGEKGEAGERGPPGLP 100
PG+ G KG G +GP GLP
Sbjct: 1381 PGQPGLKGLPGPQGPQGLP 1399
Score = 70.9 bits (172), Expect = 1e-12
Identities = 37/82 (45%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 28 GSPGIPGTPGSHGLPGR---DGRDGVKGDPGPPGPMGPPGET------PCPPGNNGLPGA 78
G PG PG G G+PG +G G+ G PGPPG GP G++ PPG G PG
Sbjct: 1327 GVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGL 1386
Query: 79 PGVPGERGEKGEAGERGPPGLP 100
G+PG +G +G G GPPG P
Sbjct: 1387 KGLPGPQGPQGLPGPTGPPGDP 1408
Score = 70.5 bits (171), Expect = 1e-12
Identities = 39/79 (49%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGER- 85
+G G PG PG G+PGR G G+KGD G G G PG T G+ G PG PG PG
Sbjct: 898 MGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTG-EKGSKGEPGLPGPPGPMD 956
Query: 86 ----GEKGEAGERGPPGLP 100
G KGE GE G PG+P
Sbjct: 957 PNLLGSKGEKGEPGLPGIP 975
Score = 70.1 bits (170), Expect = 2e-12
Identities = 42/94 (44%), Positives = 46/94 (48%), Gaps = 16/94 (17%)
Query: 28 GSPGIPGT----------PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPG 77
G PGIPG PG GLPG GRDG G PG PG G PG P PG+ G PG
Sbjct: 644 GQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPG-LPGIPGSKGEPG 702
Query: 78 APGV-----PGERGEKGEAGERGPPGLPAHLDEE 106
PG+ PG +G G G G PG P + E
Sbjct: 703 IPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLE 736
Score = 70.1 bits (170), Expect = 2e-12
Identities = 42/109 (38%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGP------PGPMGPPGETPCP------------ 69
G PG PG PG G+ G G G+ G+PGP PG GPPGE P
Sbjct: 1122 GFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQK 1181
Query: 70 --PGNNGL--PGAPGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDF 114
PG G PG PG+PG G+KG+ G G PG P + + H F
Sbjct: 1182 GEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGF 1230
Score = 69.7 bits (169), Expect = 2e-12
Identities = 35/73 (47%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G PG+ G G GLPG G+ G+ G PG PGP GP G P PG G PG G G+
Sbjct: 973 GIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDM 1032
Query: 86 GEKGEAGERGPPG 98
G G G GPPG
Sbjct: 1033 GFPGPQGVEGPPG 1045
Score = 68.6 bits (166), Expect = 5e-12
Identities = 37/86 (43%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G PGI PG GL G+ G G+ G PGP GP PP + C PG G PG+PG G +GE
Sbjct: 412 GPPGI-SIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGE 470
Query: 88 KGEAGER-------------GPPGLP 100
+G G++ GPPG P
Sbjct: 471 QGVKGDKGDTCFNCIGTGISGPPGQP 496
Score = 68.6 bits (166), Expect = 5e-12
Identities = 35/73 (47%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G PG PG PG G PG G G+KG+ G PG G PG P G+ G PG G PG G
Sbjct: 1258 GPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPG-LPGLKGDQGPPGLQGNPGRPGL 1316
Query: 88 KGEAGERGPPGLP 100
G G+ G PG+P
Sbjct: 1317 NGMKGDPGLPGVP 1329
Score = 67.8 bits (164), Expect = 8e-12
Identities = 44/120 (36%), Positives = 47/120 (39%), Gaps = 53/120 (44%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGP---------------------------- 59
G PG+PG PG G PGRDG G KGD GPPGP
Sbjct: 310 GIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGE 369
Query: 60 ---------------MGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGE-----RGPPGL 99
GPPG P PG PG PGERG+KG+ G GPPGL
Sbjct: 370 KGERGFPGIQGPPGLPGPPGAAVMGP-----PGPPGFPGERGQKGDEGPPGISIPGPPGL 424
Score = 67.8 bits (164), Expect = 8e-12
Identities = 38/90 (42%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 27 VGSPGIPGT------PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP----------P 70
+G PG+ GT PG G+ G G GV G PG PG G G+ P P
Sbjct: 1020 IGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLP 1079
Query: 71 GNNGLPGAPGVPGERGEKGEAGERGPPGLP 100
G G PG PG PG G KG G+ G PGLP
Sbjct: 1080 GPKGEPGLPGYPGNPGIKGSVGDPGLPGLP 1109
Score = 67.0 bits (162), Expect = 1e-11
Identities = 40/98 (40%), Positives = 48/98 (48%), Gaps = 29/98 (29%)
Query: 27 VGSPGIPGTPGSHG-------------LPGRDGRDGVKGDPGP---PGPMGPPGETPCPP 70
+G PG PG PG G +PG+ G G+ G GP PGP GPPG+ P
Sbjct: 1353 IGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGD----P 1408
Query: 71 GNNGLP---------GAPGVPGERGEKGEAGERGPPGL 99
G NGLP G PG+PG+ G +G G GP GL
Sbjct: 1409 GRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGL 1446
Score = 66.2 bits (160), Expect = 2e-11
Identities = 36/81 (44%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--------PGNNGLPGAP 79
G PG PG+PG L G G G +G PG PG GP G P GN G PG P
Sbjct: 1235 GPPGPPGSPGP-ALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLP 1293
Query: 80 GVPGERGEKGEAGERGPPGLP 100
G+PG +G++G G +G PG P
Sbjct: 1294 GLPGLKGDQGPPGLQGNPGRP 1314
Score = 65.9 bits (159), Expect = 3e-11
Identities = 34/76 (44%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G PG+PG PG+ GLPG G DG G G PG G GE G PG+PG PG +G
Sbjct: 93 GPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGE-------RGFPGSPGFPGLQGP 145
Query: 88 KGEAGERGPPGLPAHL 103
G G G G P +
Sbjct: 146 PGPPGIPGMKGEPGSI 161
Score = 65.9 bits (159), Expect = 3e-11
Identities = 37/76 (48%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 28 GSPGIPGTPG--SHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPG 83
G PG+PG PG L G G G G PG PG GP G P PG GL G PG+PG
Sbjct: 944 GEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPG 1003
Query: 84 ERGEKGEAGERGPPGL 99
G KG G G PGL
Sbjct: 1004 PPGPKGNPGLPGQPGL 1019
Score = 65.5 bits (158), Expect = 4e-11
Identities = 38/91 (41%), Positives = 43/91 (47%), Gaps = 18/91 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPG-------- 77
G PG+PG PGS G PG+ G G G GP G G PG P PG+ G PG
Sbjct: 497 GLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGM 556
Query: 78 --------APGVPGERGEKGEAGERGPPGLP 100
+PG PG G G G+ G PGLP
Sbjct: 557 KGDKGELGSPGAPGLPGLPGTPGQDGLPGLP 587
Score = 64.7 bits (156), Expect = 7e-11
Identities = 41/101 (40%), Positives = 49/101 (48%), Gaps = 26/101 (25%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD---------------PGPPGP---MGPPG-ETPC 68
G PG+PGTPG GLPG G G G PG PG MGPPG P
Sbjct: 570 GLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPG 629
Query: 69 PPGNNGL------PGAPGVPGERGEKGEA-GERGPPGLPAH 102
P G G+ PG PG+PG +G+ G+ + G PGLP +
Sbjct: 630 PVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGN 670
Score = 64.3 bits (155), Expect = 9e-11
Identities = 35/80 (43%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 28 GSPGIPGTPGSHGLP-------GRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPG 80
G PG PG P G G G +G PGPPG GPPG P G G G G
Sbjct: 236 GPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGP---PGGEKGEKGEQG 292
Query: 81 VPGERGEKGEAGERGPPGLP 100
PG+RG+ G+ GE G PG+P
Sbjct: 293 EPGKRGKPGKDGENGQPGIP 312
Score = 63.5 bits (153), Expect = 2e-10
Identities = 42/108 (38%), Positives = 49/108 (45%), Gaps = 36/108 (33%)
Query: 27 VGSPGIP---GTPGSHGLPGRDGRDGV--------KGDPGPPGPMGPPGE---------- 65
+G PG P G PG GLPG G G+ KG+ G GP GPPG+
Sbjct: 194 IGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDV 253
Query: 66 --------------TPCPPGNNGLPGAP-GVPGERGEKGEAGERGPPG 98
P PPG G PG P G GE+GE+GE G+RG PG
Sbjct: 254 EFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPG 301
Score = 62.8 bits (151), Expect = 3e-10
Identities = 32/56 (57%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
G G PG PG +GLPG DG G KGDPG PG G G PPG +GL G PG PG
Sbjct: 1400 GPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRG-LDGPPGPDGLQGPPGPPG 1454
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 92.4 bits (228), Expect = 3e-19
Identities = 43/82 (52%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
GSPG+PG G+ G PG G G+ G PGPPGP+G PG + P G++GL G PG+PG
Sbjct: 878 GSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPT 937
Query: 86 GEKGEAGERGPPGLPAHLDEEL 107
GEKG GE G PG P +D L
Sbjct: 938 GEKGSKGEPGLPGPPGPMDPNL 959
Score = 87.8 bits (216), Expect = 8e-18
Identities = 45/84 (53%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 23 KDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNN------GLP 76
KD G PGIPG PG G PG GRDG KG G GP GPPG PG G
Sbjct: 302 KDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNI 361
Query: 77 GAPGVPGERGEKGEAGERGPPGLP 100
G PG+PGE+GE+G G +GPPGLP
Sbjct: 362 GLPGLPGEKGERGFPGIQGPPGLP 385
Score = 83.6 bits (205), Expect = 1e-16
Identities = 43/81 (53%), Positives = 48/81 (59%), Gaps = 6/81 (7%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE--TPCPPGNNGLPGAPGVPGER 85
G+PG PG PG GLPG G G G PGPPG MGPPG P P GN GL G +
Sbjct: 171 GNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGL----NFQGPK 226
Query: 86 GEKGEAGERGPPGLPAHLDEE 106
GEKGE G +GPPG P + E+
Sbjct: 227 GEKGEQGLQGPPGPPGQISEQ 247
Score = 82.8 bits (203), Expect = 3e-16
Identities = 43/95 (45%), Positives = 48/95 (50%), Gaps = 22/95 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE-----------------TPCPP 70
G PG+PGTPG+ G PG G G G PGP G GPPG P PP
Sbjct: 1104 GLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPP 1163
Query: 71 GNNGLPGAPGVPGERGEKGEAGE-----RGPPGLP 100
G G PG G+PG G+KGE G+ GPPGLP
Sbjct: 1164 GEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLP 1198
Score = 82.4 bits (202), Expect = 3e-16
Identities = 40/72 (55%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-ETPCPPGNNGLPGAPGVPGERG 86
G PGIPG PG+ G PGR G +G G PG PGP G PG P PPG GLPG G G +G
Sbjct: 716 GFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKG 775
Query: 87 EKGEAGERGPPG 98
++G G GPPG
Sbjct: 776 DRGFPGPPGPPG 787
Score = 80.5 bits (197), Expect = 1e-15
Identities = 46/89 (51%), Positives = 49/89 (55%), Gaps = 13/89 (14%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPG--PMGPPGETPCP-----PGNNGLPGAPG 80
G PG PG PG G PG G G KGDPGPPG GPPGE P PG G PG+PG
Sbjct: 822 GPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPG 881
Query: 81 VPGER------GEKGEAGERGPPGLPAHL 103
+PG+ G KGE G GPPG P L
Sbjct: 882 LPGKAGASGFPGTKGEMGMMGPPGPPGPL 910
Score = 80.5 bits (197), Expect = 1e-15
Identities = 40/74 (54%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G PG+PG G GLPG G G+KG G PG G PG TP G GLPG PG PG G
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPG-TPGAKGQPGLPGFPGTPGPPG 1131
Query: 87 EKGEAGERGPPGLP 100
KG +G G PGLP
Sbjct: 1132 PKGISGPPGNPGLP 1145
Score = 78.6 bits (192), Expect = 5e-15
Identities = 41/84 (48%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGP---MGPPG--------ETPCPPGNNGLP 76
G PG+PG PG G PG G+ G G PGPPGP GPPG P PG++G P
Sbjct: 57 GHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAP 116
Query: 77 GAPGVPGERGEKGEAGERGPPGLP 100
G G+PG G KGE G G PG P
Sbjct: 117 GPQGIPGCNGTKGERGFPGSPGFP 140
Score = 76.6 bits (187), Expect = 2e-14
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 6/75 (8%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G+PG+PG PG G PG G G G PGP G GPPG P G G PG+PG+PG++G+
Sbjct: 1009 GNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPG----PSGVPGQPGSPGLPGQKGD 1064
Query: 88 KGEAG--ERGPPGLP 100
KG+ G G PGLP
Sbjct: 1065 KGDPGISSIGLPGLP 1079
Score = 76.6 bits (187), Expect = 2e-14
Identities = 38/76 (50%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGET-PCPPGNNGLPGAPGVPGERG 86
G G+PG PG+ GLPG G G G PG GP GPPG P G G PG G PG G
Sbjct: 1205 GDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPG 1264
Query: 87 EKGEAGERGPPGLPAH 102
+G G GPPGLP +
Sbjct: 1265 FQGLPGPEGPPGLPGN 1280
Score = 75.9 bits (185), Expect = 3e-14
Identities = 42/84 (50%), Positives = 49/84 (58%), Gaps = 10/84 (11%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP-------GPMGPPGETPCPPGNNGLP 76
++C PG PG PGS G G G GVKGD G G GPPG+ P PG G P
Sbjct: 449 EIC--EPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQ-PGLPGLPGPP 505
Query: 77 GAPGVPGERGEKGEAGERGPPGLP 100
G+ G PG++GEKG+AG GP GLP
Sbjct: 506 GSLGFPGQKGEKGQAGATGPKGLP 529
Score = 75.5 bits (184), Expect = 4e-14
Identities = 47/94 (50%), Positives = 49/94 (52%), Gaps = 17/94 (18%)
Query: 23 KDVCVGSPGIPGTPGSHGLPGRDGRDGVKGD-----PGPPGPMGPPGETPCPPGN----- 72
+D VG PG PG PG GLPG G G G PGPPGP G PG P PPG
Sbjct: 673 RDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPG-IPGPPGAPGTPG 731
Query: 73 ----NGLPGAPGVPGERGEKGEA--GERGPPGLP 100
G PG PG PG +GE G A G GPPGLP
Sbjct: 732 RIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLP 765
Score = 75.5 bits (184), Expect = 4e-14
Identities = 40/75 (53%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 28 GSPG--IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGER 85
G PG +PG PG GLPG G G KGD G PGP GPPG T GL G PG G+
Sbjct: 749 GEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPPGRT-------GLDGLPGPKGDV 801
Query: 86 GEKGEAGERGPPGLP 100
G G+ G GPPGLP
Sbjct: 802 GPNGQPGPMGPPGLP 816
Score = 75.1 bits (183), Expect = 5e-14
Identities = 40/80 (50%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 28 GSPGIPGTPGSHG---LPGRDGRDGVKGDPGPPGPMGPPG----ETPCPPGNNGLPGAPG 80
G PG+PG PG G LPG G G G PG PG G PG P PPG G PG PG
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPG 722
Query: 81 VPGERGEKGEAGERGPPGLP 100
PG G G G GPPG P
Sbjct: 723 PPGAPGTPGRIGLEGPPGPP 742
Score = 74.7 bits (182), Expect = 7e-14
Identities = 43/83 (51%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGV---KGDPGP---PGPMGPPG----ETPCPPGNNGLP 76
+G G G PG G PGR G DG+ KGD GP PGPMGPPG PPG G+P
Sbjct: 771 LGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIP 830
Query: 77 GAPGVPGERGEKGEAGERGPPGL 99
G G PG G GE G+ GPPGL
Sbjct: 831 GPIGQPGLHGIPGEKGDPGPPGL 853
Score = 72.8 bits (177), Expect = 3e-13
Identities = 39/87 (44%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 28 GSPGIPGTPGS--------HGLPGRDGRDGVKG------DPGPPGPMGPPGETPCPPGNN 73
G+PG+PG PG+ G PG G G++G PG PGP G PG+T PG
Sbjct: 606 GNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKP 665
Query: 74 GLPGAPGVPGERGEKGEAGERGPPGLP 100
GLPG PG G+ G G+ G G PGLP
Sbjct: 666 GLPGNPGRDGDVGLPGDPGLPGQPGLP 692
Score = 72.4 bits (176), Expect = 3e-13
Identities = 41/91 (45%), Positives = 48/91 (52%), Gaps = 15/91 (16%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG-------VKGDPGPPGPMGPPGETPCP--PGNNGLPGA 78
G PGIPG PG+ G PG G G +KGD G G G PG P PG +GLPG
Sbjct: 527 GLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGL 586
Query: 79 PGVPGE------RGEKGEAGERGPPGLPAHL 103
PG GE +GE+G G G PGLP ++
Sbjct: 587 PGPKGEPGGITFKGERGPPGNPGLPGLPGNI 617
Score = 72.4 bits (176), Expect = 3e-13
Identities = 38/75 (50%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGE--R 85
G+PG PG PG G G G G+ G+PG PGP G PG PG G PG PG PG
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGF-PGVQGPPGPPGSPGPALE 1248
Query: 86 GEKGEAGERGPPGLP 100
G KG G +GPPG P
Sbjct: 1249 GPKGNPGPQGPPGRP 1263
Score = 72.0 bits (175), Expect = 4e-13
Identities = 38/81 (46%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE--------TPCPPGNNGLPGAP 79
G PG GT G G PG G G++G PGPPG G GE P P GN G PG P
Sbjct: 120 GIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPP 179
Query: 80 GVPGERGEKGEAGERGPPGLP 100
G+ G G G G GPPG P
Sbjct: 180 GIQGLPGPTGIPGPIGPPGPP 200
Score = 72.0 bits (175), Expect = 4e-13
Identities = 38/80 (47%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGE--- 84
G PG+PG PG G G G+ G KG G GP G PG P PG G PG+ G PG+
Sbjct: 494 GQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPG-IPGAPGAPGFPGSKGEPGDILT 552
Query: 85 ----RGEKGEAGERGPPGLP 100
+G+KGE G G PGLP
Sbjct: 553 FPGMKGDKGELGSPGAPGLP 572
Score = 72.0 bits (175), Expect = 4e-13
Identities = 41/85 (48%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAP------- 79
+GSPG PG PG G PG+DG G+ G G PG + GE PPGN GLPG P
Sbjct: 563 LGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERG-PPGNPGLPGLPGNIGPMG 621
Query: 80 ----GVPGERGEKGEAGERGPPGLP 100
G PG GEKG G G PG P
Sbjct: 622 PPGFGPPGPVGEKGIQGVAGNPGQP 646
Score = 71.6 bits (174), Expect = 6e-13
Identities = 39/81 (48%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--------PGNNGLPGAP 79
G PGIPG PG GLPG G G+ PGP GP G PG P G+ GLPG P
Sbjct: 1379 GPPGIPGQPGLKGLPGPQGPQGL---PGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQP 1435
Query: 80 GVPGERGEKGEAGERGPPGLP 100
G G G G G +GPPG P
Sbjct: 1436 GTRGLDGPPGPDGLQGPPGPP 1456
Score = 71.2 bits (173), Expect = 8e-13
Identities = 47/109 (43%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 6 LALTLILMAASGAAC---EVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGP 62
LAL+L A AAC C S GI G G G PG +G G+ G PGP GP GP
Sbjct: 15 LALSLWGQPAEAAACYGCSPGSKCDCS-GIKGEKGERGFPGLEGHPGLPGFPGPEGPPGP 73
Query: 63 PGE-----TPCPPGNN------GLPGAPGVPGERGEKGEAGERGPPGLP 100
G+ P PPG GLPG PG PG G G G GP G+P
Sbjct: 74 RGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIP 122
Score = 71.2 bits (173), Expect = 8e-13
Identities = 37/73 (50%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG--ETPCPPGNNGLPGAPGVPGER 85
G G PG PG G+ G G G+ GDPG PG G PG P P GN GLPG PG+ G
Sbjct: 964 GEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPP 1023
Query: 86 GEKGEAGERGPPG 98
G KG G+ G PG
Sbjct: 1024 GLKGTIGDMGFPG 1036
Score = 70.9 bits (172), Expect = 1e-12
Identities = 41/87 (47%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 26 CVGSPGIPGTPGSHGLPGRDGR------DGVKGDPGP------PGPMGPPGETPCPPGNN 73
C G+ G G PGS G PG G G+KG+PG PGP G PG P PPG
Sbjct: 124 CNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPG-YPGPPGIQ 182
Query: 74 GLPGAPGVPGERGEKGEAGERGPPGLP 100
GLPG G+PG G G G GPPG P
Sbjct: 183 GLPGPTGIPGPIGPPGPPGLMGPPGPP 209
Score = 70.9 bits (172), Expect = 1e-12
Identities = 37/79 (46%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE--TPCPPGNN----GLPGAPGV 81
G PG+PG PG G+ G G G G G PG +GPPG P P G + G G PG+
Sbjct: 1324 GDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGI 1383
Query: 82 PGERGEKGEAGERGPPGLP 100
PG+ G KG G +GP GLP
Sbjct: 1384 PGQPGLKGLPGPQGPQGLP 1402
Score = 70.9 bits (172), Expect = 1e-12
Identities = 37/82 (45%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 28 GSPGIPGTPGSHGLPGR---DGRDGVKGDPGPPGPMGPPGET------PCPPGNNGLPGA 78
G PG PG G G+PG +G G+ G PGPPG GP G++ PPG G PG
Sbjct: 1330 GVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGL 1389
Query: 79 PGVPGERGEKGEAGERGPPGLP 100
G+PG +G +G G GPPG P
Sbjct: 1390 KGLPGPQGPQGLPGPTGPPGDP 1411
Score = 70.5 bits (171), Expect = 1e-12
Identities = 39/79 (49%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGER- 85
+G G PG PG G+PGR G G+KGD G G G PG T G+ G PG PG PG
Sbjct: 898 MGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTG-EKGSKGEPGLPGPPGPMD 956
Query: 86 ----GEKGEAGERGPPGLP 100
G KGE GE G PG+P
Sbjct: 957 PNLLGSKGEKGEPGLPGIP 975
Score = 70.1 bits (170), Expect = 2e-12
Identities = 42/94 (44%), Positives = 46/94 (48%), Gaps = 16/94 (17%)
Query: 28 GSPGIPGT----------PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPG 77
G PGIPG PG GLPG GRDG G PG PG G PG P PG+ G PG
Sbjct: 644 GQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPG-LPGIPGSKGEPG 702
Query: 78 APGV-----PGERGEKGEAGERGPPGLPAHLDEE 106
PG+ PG +G G G G PG P + E
Sbjct: 703 IPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLE 736
Score = 70.1 bits (170), Expect = 2e-12
Identities = 42/109 (38%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGP------PGPMGPPGETPCP------------ 69
G PG PG PG G+ G G G+ G+PGP PG GPPGE P
Sbjct: 1122 GFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQK 1181
Query: 70 --PGNNGL--PGAPGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDF 114
PG G PG PG+PG G+KG+ G G PG P + + H F
Sbjct: 1182 GEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGF 1230
Score = 69.7 bits (169), Expect = 2e-12
Identities = 35/73 (47%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G PG+ G G GLPG G+ G+ G PG PGP GP G P PG G PG G G+
Sbjct: 973 GIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDM 1032
Query: 86 GEKGEAGERGPPG 98
G G G GPPG
Sbjct: 1033 GFPGPQGVEGPPG 1045
Score = 69.3 bits (168), Expect = 3e-12
Identities = 41/92 (44%), Positives = 48/92 (52%), Gaps = 20/92 (21%)
Query: 28 GSPGIPGT------PGSHGLPGRDGRDGVKGDPGPP---------GPMGPPGETPCPPGN 72
G PG+PG PG G PGR G +G+KGDPG P GP G PG P G
Sbjct: 1294 GLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAG-PEGE 1352
Query: 73 NGLPGAPGVPGERGEKGEA----GERGPPGLP 100
GL G PG PG G G++ G+ GPPG+P
Sbjct: 1353 PGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIP 1384
Score = 68.6 bits (166), Expect = 5e-12
Identities = 37/86 (43%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G PGI PG GL G+ G G+ G PGP GP PP + C PG G PG+PG G +GE
Sbjct: 412 GPPGI-SIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGE 470
Query: 88 KGEAGER-------------GPPGLP 100
+G G++ GPPG P
Sbjct: 471 QGVKGDKGDTCFNCIGTGISGPPGQP 496
Score = 67.8 bits (164), Expect = 8e-12
Identities = 44/120 (36%), Positives = 47/120 (39%), Gaps = 53/120 (44%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGP---------------------------- 59
G PG+PG PG G PGRDG G KGD GPPGP
Sbjct: 310 GIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGE 369
Query: 60 ---------------MGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGE-----RGPPGL 99
GPPG P PG PG PGERG+KG+ G GPPGL
Sbjct: 370 KGERGFPGIQGPPGLPGPPGAAVMGP-----PGPPGFPGERGQKGDEGPPGISIPGPPGL 424
Score = 67.8 bits (164), Expect = 8e-12
Identities = 38/90 (42%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 27 VGSPGIPGT------PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP----------P 70
+G PG+ GT PG G+ G G GV G PG PG G G+ P P
Sbjct: 1020 IGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLP 1079
Query: 71 GNNGLPGAPGVPGERGEKGEAGERGPPGLP 100
G G PG PG PG G KG G+ G PGLP
Sbjct: 1080 GPKGEPGLPGYPGNPGIKGSVGDPGLPGLP 1109
Score = 67.0 bits (162), Expect = 1e-11
Identities = 40/98 (40%), Positives = 48/98 (48%), Gaps = 29/98 (29%)
Query: 27 VGSPGIPGTPGSHG-------------LPGRDGRDGVKGDPGP---PGPMGPPGETPCPP 70
+G PG PG PG G +PG+ G G+ G GP PGP GPPG+ P
Sbjct: 1356 IGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGD----P 1411
Query: 71 GNNGLP---------GAPGVPGERGEKGEAGERGPPGL 99
G NGLP G PG+PG+ G +G G GP GL
Sbjct: 1412 GRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGL 1449
Score = 66.6 bits (161), Expect = 2e-11
Identities = 34/73 (46%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G PG G PG G PG G G+KG+ G PG G PG P G+ G PG G PG G
Sbjct: 1261 GRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPG-LPGLKGDQGPPGLQGNPGRPGL 1319
Query: 88 KGEAGERGPPGLP 100
G G+ G PG+P
Sbjct: 1320 NGMKGDPGLPGVP 1332
Score = 66.2 bits (160), Expect = 2e-11
Identities = 36/79 (45%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G+ GI G G+ G PG G G+KGD GPPG G PG PG NG+ G PG+PG
Sbjct: 1279 GNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGR----PGLNGMKGDPGLPGV--- 1331
Query: 88 KGEAGERGPPGLPAHLDEE 106
G G +GP G+P E
Sbjct: 1332 PGFPGMKGPSGVPGSAGPE 1350
Score = 65.9 bits (159), Expect = 3e-11
Identities = 34/76 (44%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G PG+PG PG+ GLPG G DG G G PG G GE G PG+PG PG +G
Sbjct: 93 GPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGE-------RGFPGSPGFPGLQGP 145
Query: 88 KGEAGERGPPGLPAHL 103
G G G G P +
Sbjct: 146 PGPPGIPGMKGEPGSI 161
Score = 65.9 bits (159), Expect = 3e-11
Identities = 37/76 (48%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 28 GSPGIPGTPG--SHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPG 83
G PG+PG PG L G G G G PG PG GP G P PG GL G PG+PG
Sbjct: 944 GEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPG 1003
Query: 84 ERGEKGEAGERGPPGL 99
G KG G G PGL
Sbjct: 1004 PPGPKGNPGLPGQPGL 1019
Score = 65.5 bits (158), Expect = 4e-11
Identities = 38/91 (41%), Positives = 43/91 (47%), Gaps = 18/91 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPG-------- 77
G PG+PG PGS G PG+ G G G GP G G PG P PG+ G PG
Sbjct: 497 GLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGM 556
Query: 78 --------APGVPGERGEKGEAGERGPPGLP 100
+PG PG G G G+ G PGLP
Sbjct: 557 KGDKGELGSPGAPGLPGLPGTPGQDGLPGLP 587
Score = 65.1 bits (157), Expect = 5e-11
Identities = 37/84 (44%), Positives = 45/84 (53%), Gaps = 12/84 (14%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGL---------P 76
G PG PG+PG L G G G +G PG PG G PG P PGN G+ P
Sbjct: 1235 GPPGPPGSPGP-ALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQP 1293
Query: 77 GAPGVPGERGEKGEAGERGPPGLP 100
G PG+PG +G++G G +G PG P
Sbjct: 1294 GLPGLPGLKGDQGPPGLQGNPGRP 1317
Score = 64.7 bits (156), Expect = 7e-11
Identities = 41/101 (40%), Positives = 49/101 (48%), Gaps = 26/101 (25%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD---------------PGPPGP---MGPPG-ETPC 68
G PG+PGTPG GLPG G G G PG PG MGPPG P
Sbjct: 570 GLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPG 629
Query: 69 PPGNNGL------PGAPGVPGERGEKGEA-GERGPPGLPAH 102
P G G+ PG PG+PG +G+ G+ + G PGLP +
Sbjct: 630 PVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGN 670
Score = 64.7 bits (156), Expect = 7e-11
Identities = 34/75 (45%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G G PG PG GLPG +G G+ G+ G G G PG+ P PG G G PG+ G
Sbjct: 1255 GPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNP 1314
Query: 86 GEKGEAGERGPPGLP 100
G G G +G PGLP
Sbjct: 1315 GRPGLNGMKGDPGLP 1329
Score = 64.3 bits (155), Expect = 9e-11
Identities = 35/80 (43%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 28 GSPGIPGTPGSHGLP-------GRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPG 80
G PG PG P G G G +G PGPPG GPPG P G G G G
Sbjct: 236 GPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGP---PGGEKGEKGEQG 292
Query: 81 VPGERGEKGEAGERGPPGLP 100
PG+RG+ G+ GE G PG+P
Sbjct: 293 EPGKRGKPGKDGENGQPGIP 312
Score = 63.5 bits (153), Expect = 2e-10
Identities = 42/108 (38%), Positives = 49/108 (45%), Gaps = 36/108 (33%)
Query: 27 VGSPGIP---GTPGSHGLPGRDGRDGV--------KGDPGPPGPMGPPGE---------- 65
+G PG P G PG GLPG G G+ KG+ G GP GPPG+
Sbjct: 194 IGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDV 253
Query: 66 --------------TPCPPGNNGLPGAP-GVPGERGEKGEAGERGPPG 98
P PPG G PG P G GE+GE+GE G+RG PG
Sbjct: 254 EFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPG 301
Score = 62.8 bits (151), Expect = 3e-10
Identities = 32/56 (57%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
G G PG PG +GLPG DG G KGDPG PG G G PPG +GL G PG PG
Sbjct: 1403 GPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRG-LDGPPGPDGLQGPPGPPG 1457
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 92.0 bits (227), Expect = 4e-19
Identities = 47/91 (51%), Positives = 55/91 (60%), Gaps = 7/91 (7%)
Query: 15 ASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNG 74
A G E CVGSPG+PG PG G G +G G++G PGPPGP+GPPG PG G
Sbjct: 1005 ARGDNSEGDPGCVGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGF----PGAVG 1060
Query: 75 LPGAPGVPGERGEKG---EAGERGPPGLPAH 102
PG PG+ GERG G + GE GPPG P +
Sbjct: 1061 SPGLPGLQGERGLTGLTGDKGEPGPPGQPGY 1091
Score = 82.0 bits (201), Expect = 4e-16
Identities = 40/74 (54%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G PG PG GS GLPG G G+ G G G GPPG+ P PG G PG PG+ GERG
Sbjct: 1050 IGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQ-PGYPGATGPPGLPGIKGERG 1108
Query: 87 EKGEAGERGPPGLP 100
G AGE+G PG P
Sbjct: 1109 YTGSAGEKGEPGPP 1122
Score = 79.7 bits (195), Expect = 2e-15
Identities = 43/90 (47%), Positives = 50/90 (55%), Gaps = 14/90 (15%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGP---MGPPG--------ETPCPPGNNGLP 76
G PGI G G GL G+DG+ G++GDPGP GP MGPPG P P G+ G P
Sbjct: 1204 GPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKP 1263
Query: 77 GAPGV---PGERGEKGEAGERGPPGLPAHL 103
G PG PG GE G G +G PG P H+
Sbjct: 1264 GPPGSTGRPGAEGEPGAMGPQGRPGPPGHV 1293
Score = 77.0 bits (188), Expect = 1e-14
Identities = 40/76 (52%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP--GPMGPPGETPCPPGNNGLPGAPGVPGE 84
VG PG PG PG G+ G G GV+G+PGPP G GP GE PG GLPG G+PG
Sbjct: 755 VGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGE----PGAPGLPGIQGLPGP 810
Query: 85 RGEKGEAGERGPPGLP 100
RG G GE+G G P
Sbjct: 811 RGPPGPTGEKGAQGSP 826
Score = 73.9 bits (180), Expect = 1e-13
Identities = 40/84 (47%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGET--------PCPPGNNGLPG-- 77
G G PG PGS GLPG G G +G+ GP G G G+ P PPG G PG
Sbjct: 1114 GEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKV 1173
Query: 78 -APGVPGERGEKGEAGERGPPGLP 100
+PG PG + EKG G RGP GLP
Sbjct: 1174 GSPGPPGPQAEKGSEGIRGPSGLP 1197
Score = 73.6 bits (179), Expect = 2e-13
Identities = 39/76 (51%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPG---PPGPMGPPGETPCPPGNNGLPGAPGVPGE 84
GSPG PG PG G G DG DG G PG PGP GPPG PPG G G PG+PG
Sbjct: 1198 GSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPG-LMGPPGFKGKTGHPGLPGP 1256
Query: 85 RGEKGEAGERGPPGLP 100
+G+ G+ G G G P
Sbjct: 1257 KGDCGKPGPPGSTGRP 1272
Score = 73.2 bits (178), Expect = 2e-13
Identities = 42/99 (42%), Positives = 48/99 (48%), Gaps = 30/99 (30%)
Query: 28 GSPGIPGTPGSHGLPGRDGRD---------------GVKGD-----------PGPPGPMG 61
G+PG PG PGS GLPG+ GR+ G KGD PGPPGP G
Sbjct: 1482 GAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPPGPQG 1541
Query: 62 PPG----ETPCPPGNNGLPGAPGVPGERGEKGEAGERGP 96
PPG P G G+PG PG PG G+ G+AG P
Sbjct: 1542 PPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNP 1580
Score = 72.8 bits (177), Expect = 3e-13
Identities = 37/75 (49%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDP---GPPGPMGPPGETPC-PPGNNGLPGAPGVPG 83
G PGI G PG G PG G G +G P G GP+GPPG + PPG +G G G+ G
Sbjct: 800 GLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPPGRDGQQGQTGLRG 859
Query: 84 ERGEKGEAGERGPPG 98
GEKG GE+G PG
Sbjct: 860 TPGEKGPRGEKGEPG 874
Score = 72.8 bits (177), Expect = 3e-13
Identities = 38/71 (53%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G PG PG PG G PG G DG G GPPG G G PPG G PGA G G+ GE
Sbjct: 1326 GLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYG----PPGPKGDPGAAGQKGQAGE 1381
Query: 88 KGEAGERGPPG 98
KG AG G PG
Sbjct: 1382 KGRAGMPGGPG 1392
Score = 71.2 bits (173), Expect = 8e-13
Identities = 41/99 (41%), Positives = 45/99 (45%), Gaps = 28/99 (28%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGV---KGDPGPPGPMGPPGETPCP--------------- 69
G G PG PGS G PG +G G +G PGPPG +GPPG P
Sbjct: 1258 GDCGKPGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRG 1317
Query: 70 ----------PGNNGLPGAPGVPGERGEKGEAGERGPPG 98
PG G PG PG PGE G G AG+ GPPG
Sbjct: 1318 ATGERGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPG 1356
Score = 70.9 bits (172), Expect = 1e-12
Identities = 40/89 (44%), Positives = 45/89 (50%), Gaps = 15/89 (16%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGE--- 84
G PG+PG G G PG G G G G PG MGP G P PPG+ G PG PG PG
Sbjct: 1249 GHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQGR-PGPPGHVGPPGPPGQPGPAGI 1307
Query: 85 -----RGEKGEAGERG------PPGLPAH 102
+G++G GERG PG P H
Sbjct: 1308 SAVGLKGDRGATGERGLAGLPGQPGPPGH 1336
Score = 68.9 bits (167), Expect = 4e-12
Identities = 37/81 (45%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGET-----PCPPGNNGLPGAPGVP 82
G PG PG PG+ G G++G G +G GPPGP G PG G G+PG PG
Sbjct: 1335 GHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKS 1394
Query: 83 GER---GEKGEAGERGPPGLP 100
G G G AGERG PG P
Sbjct: 1395 GSMGPVGPPGPAGERGHPGAP 1415
Score = 68.6 bits (166), Expect = 5e-12
Identities = 41/105 (39%), Positives = 43/105 (40%), Gaps = 34/105 (32%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE-----TPCP------------- 69
G G G PG G PG GR G+ G+PG GP GP GE T CP
Sbjct: 682 GQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRP 741
Query: 70 ----------------PGNNGLPGAPGVPGERGEKGEAGERGPPG 98
PG G PG PGV G G KG GE GPPG
Sbjct: 742 GQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPG 786
Score = 67.0 bits (162), Expect = 1e-11
Identities = 40/91 (43%), Positives = 45/91 (49%), Gaps = 18/91 (19%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDP---------GPPGPMGPPGETPCPPGNNGLPG 77
+G PG G G GLPG G G G P G PG MGP G P PPG+ G PG
Sbjct: 1239 MGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQGR-PGPPGHVGPPG 1297
Query: 78 APGVPGE--------RGEKGEAGERGPPGLP 100
PG PG +G++G GERG GLP
Sbjct: 1298 PPGQPGPAGISAVGLKGDRGATGERGLAGLP 1328
Score = 66.2 bits (160), Expect = 2e-11
Identities = 39/89 (43%), Positives = 45/89 (50%), Gaps = 19/89 (21%)
Query: 28 GSPGIPGTPGSHGLPGR------------DGRDGVKGD---PGPPGPMGPPGETPCPPGN 72
G PG PG PG G PG+ G +G++G PG PGP GPPG P G
Sbjct: 1156 GQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPG-IQGPAGL 1214
Query: 73 NGLPGAPGVPGERGEKGEAGE---RGPPG 98
+GL G G PG RG+ G AG GPPG
Sbjct: 1215 DGLDGKDGKPGLRGDPGPAGPPGLMGPPG 1243
Score = 66.2 bits (160), Expect = 2e-11
Identities = 36/79 (45%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGET--PCPPGNNGL---PGAPGV 81
VG G G G GL G G+ G G PGPPG G G PPG G PG G
Sbjct: 1310 VGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGD 1369
Query: 82 PGERGEKGEAGERGPPGLP 100
PG G+KG+AGE+G G+P
Sbjct: 1370 PGAAGQKGQAGEKGRAGMP 1388
Score = 65.5 bits (158), Expect = 4e-11
Identities = 36/74 (48%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G G+PG+ G G G G G+KG PG PG G PGE C G G G PG G
Sbjct: 386 LGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEI-CVIGPKGQKGDPGFV---G 441
Query: 87 EKGEAGERGPPGLP 100
+G AGE GPPGLP
Sbjct: 442 PEGLAGEPGPPGLP 455
Score = 65.1 bits (157), Expect = 5e-11
Identities = 43/126 (34%), Positives = 52/126 (41%), Gaps = 37/126 (29%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGET----- 66
L++++GA+ +V G PG+PG G GL G G G G G PGP GP G
Sbjct: 568 LVSSTGASGDVGSPGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIKGA 627
Query: 67 ------PCP--------------------------PGNNGLPGAPGVPGERGEKGEAGER 94
PCP P GLPG G GERG KG+ G+
Sbjct: 628 KGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLPGKQGKAGERGLKGQKGDA 687
Query: 95 GPPGLP 100
G PG P
Sbjct: 688 GNPGDP 693
Score = 64.3 bits (155), Expect = 9e-11
Identities = 35/78 (44%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPP-----GPMGPPGETPCPPGNNGLPGAPGVP 82
G G+PG PGS G G G D V+ P P GP G GE+ G +GLPG+ G
Sbjct: 340 GERGLPGPPGSKGEKGARGNDCVRISPDAPLQCAEGPKGEKGESGA-LGPSGLPGSTGEK 398
Query: 83 GERGEKGEAGERGPPGLP 100
G++GEKG+ G +G PG P
Sbjct: 399 GQKGEKGDGGIKGVPGKP 416
Score = 63.5 bits (153), Expect = 2e-10
Identities = 36/77 (46%), Positives = 41/77 (53%), Gaps = 15/77 (19%)
Query: 29 SPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGEK 88
+PG PG PG G P GR G G PG PG +G G GLPG G+PG +GEK
Sbjct: 1471 APGRPGPPGKDGAP---GRPGAPGSPGLPGQIG-------REGRQGLPGVRGLPGTKGEK 1520
Query: 89 GE-----AGERGPPGLP 100
G+ AGE G PG P
Sbjct: 1521 GDIGIGIAGENGLPGPP 1537
Score = 62.0 bits (149), Expect = 5e-10
Identities = 36/86 (41%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G PG PG GLPG+ G+ G +G G G G PG+ PG G G PG+ GE G
Sbjct: 656 GEKGEPGPPG-FGLPGKQGKAGERGLKGQKGDAGNPGD----PGTPGTTGRPGLSGEPGV 710
Query: 88 KGEAGERGPPGLPAHLDEELQATLHD 113
+G AG +G G LQ T+ D
Sbjct: 711 QGPAGPKGEKGDGCTACPSLQGTVTD 736
Score = 61.2 bits (147), Expect = 8e-10
Identities = 36/97 (37%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 24 DVCV----GSPGIPGTPGSHGLPGRDGRDGVKGDPGP--PGPMGPPGETPCPPGNNGLPG 77
++CV G G PG G GL G G G+ G PG PG G PG P P G+ G G
Sbjct: 424 EICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSG 483
Query: 78 APGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDF 114
PG G G+ G+ G +G G P + L +F
Sbjct: 484 IPGKEGPGGKPGKPGVKGEKGDPCEVCPTLPEGFQNF 520
Score = 60.5 bits (145), Expect = 1e-09
Identities = 39/85 (45%), Positives = 43/85 (50%), Gaps = 19/85 (22%)
Query: 28 GSPGIPGTPGSHGLPGRD---GRDGVKGDPG---------PPGPMGPPGETPCPPGNNGL 75
G G+PG PG G PG G G KGDPG PGP G PG PPG GL
Sbjct: 408 GIKGVPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPG----PPG-IGL 462
Query: 76 PGAPGVPGERGEKGEAGERGPPGLP 100
PG PG PG G G G++G G+P
Sbjct: 463 PGTPGDPG--GPPGPKGDKGSSGIP 485
Score = 59.7 bits (143), Expect = 2e-09
Identities = 34/78 (43%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G PG G G G GR G+ G PG G MGP G PPG G G PG PG G
Sbjct: 1365 GPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGPVG----PPGPAGERGHPGAPGPSGS 1420
Query: 88 KGEAGERGPPGLPAHLDE 105
G G G G + DE
Sbjct: 1421 PGLPGVPGSMGDMVNYDE 1438
Score = 58.5 bits (140), Expect = 5e-09
Identities = 36/102 (35%), Positives = 41/102 (40%), Gaps = 28/102 (27%)
Query: 27 VGSPG--IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------------- 70
VG PG + G PG G G+ G G G+ GP G G PGE CP
Sbjct: 835 VGPPGASVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPG 894
Query: 71 ------------GNNGLPGAPGVPGERGEKGEAGERGPPGLP 100
G G+PG PG PG G +G G G PG P
Sbjct: 895 LWMGSSWQPGPQGPPGIPGPPGPPGVPGLQGVPGNNGLPGQP 936
Score = 57.8 bits (138), Expect = 9e-09
Identities = 38/93 (40%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 27 VGSPGIPGTPGSHGLP----GRDGRDGVKGDPGPP--------------GPMGPPGETPC 68
VG PG PG G G P G G G+KG+ G P G G+
Sbjct: 521 VGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVVGAQHLVSSTGASGDVGS 580
Query: 69 PP-GNNGLPGAPGVPGERGEKGEAGERGPPGLP 100
P G GLPG GVPG +GEKG GE GP G P
Sbjct: 581 PGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSP 613
Score = 57.8 bits (138), Expect = 9e-09
Identities = 39/102 (38%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPG------NNGLPGAPGV 81
G PGIPG PG G+PG G G G PG PG G P + + G
Sbjct: 907 GPPGIPGPPGPPGVPGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCVQGQRAH 966
Query: 82 PGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRG 123
PG EKGE G++G PG+P LD Q L R + + RG
Sbjct: 967 PGYLVEKGEKGDQGIPGVPG-LDNCAQCFLSLERPRAEEARG 1007
Score = 57.8 bits (138), Expect = 9e-09
Identities = 32/77 (41%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
D G G PG G +G PG G G G G G G G P PG +G G G PG
Sbjct: 1346 DGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAG-MPGGPGKSGSMGPVGPPG 1404
Query: 84 ERGEKGEAGERGPPGLP 100
GE+G G GP G P
Sbjct: 1405 PAGERGHPGAPGPSGSP 1421
Score = 55.8 bits (133), Expect = 3e-08
Identities = 38/117 (32%), Positives = 41/117 (35%), Gaps = 40/117 (34%)
Query: 23 KDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMG--------------------- 61
K +G G PG G G PG G G G PG PG MG
Sbjct: 1393 KSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFD 1452
Query: 62 ------------------PPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLP 100
PG P PPG +G PG PG PG G G+ G G GLP
Sbjct: 1453 ERMAYYTSRMQFPMEMAAAPGR-PGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLP 1508
Score = 55.1 bits (131), Expect = 6e-08
Identities = 32/75 (42%), Positives = 35/75 (46%), Gaps = 15/75 (20%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDP---------------GPPGPMGPPGETPCPPGN 72
GS GIPG G G PG+ G G KGDP G PG GP GE P
Sbjct: 480 GSSGIPGKEGPGGKPGKPGVKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPVPA 539
Query: 73 NGLPGAPGVPGERGE 87
G PG G+ GE+GE
Sbjct: 540 RGDPGIQGIKGEKGE 554
Score = 53.1 bits (126), Expect = 2e-07
Identities = 37/115 (32%), Positives = 43/115 (37%), Gaps = 40/115 (34%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG------------------------------------VK 51
G PG PG GS GLPG G G +
Sbjct: 1410 GHPGAPGPSGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMA 1469
Query: 52 GDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDEE 106
PG PGP G G PG G PG+PG+PG+ G +G G G GLP E+
Sbjct: 1470 AAPGRPGPPGKDGA----PGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEK 1520
Score = 48.9 bits (115), Expect = 4e-06
Identities = 38/129 (29%), Positives = 46/129 (35%), Gaps = 56/129 (43%)
Query: 28 GSPGIPGTPGSHGLPGRDG----------------------------------RDGVKGD 53
G PG+ G PG++GLPG+ G G KGD
Sbjct: 919 GVPGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCVQGQRAHPGYLVEKGEKGD 978
Query: 54 PGPPGPMG-------------PPGETPCPPGNNGLPGA---------PGVPGERGEKGEA 91
G PG G P E + G PG PG+PG+RGE+G
Sbjct: 979 QGIPGVPGLDNCAQCFLSLERPRAEEARGDNSEGDPGCVGSPGLPGPPGLPGQRGEEGPP 1038
Query: 92 GERGPPGLP 100
G RG PG P
Sbjct: 1039 GMRGSPGPP 1047
Score = 48.5 bits (114), Expect = 5e-06
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 30 PGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVP-----GE 84
P + G S+ G G KG+ G PGP G GE GN+ + +P P G
Sbjct: 318 PCVHGARDSNVTLAPSGPKGGKGERGLPGPPGSKGEKGAR-GNDCVRISPDAPLQCAEGP 376
Query: 85 RGEKGEAGERGPPGLPAHLDEELQ 108
+GEKGE+G GP GLP E+ Q
Sbjct: 377 KGEKGESGALGPSGLPGSTGEKGQ 400
Score = 48.1 bits (113), Expect = 7e-06
Identities = 43/160 (26%), Positives = 49/160 (30%), Gaps = 57/160 (35%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG----------------------- 64
G PG PG GS G G G G +G PG PGP G PG
Sbjct: 1386 GMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEIKRFIRQ 1445
Query: 65 ---------------------ETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHL 103
E PG G PG G PG G G PGLP +
Sbjct: 1446 EIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPGAPGS------PGLPGQI 1499
Query: 104 DEELQATLHDFRHQILQTRGALSLQGSIMTVGEKVFSSNG 143
E R + RG +G +G + NG
Sbjct: 1500 GRE-------GRQGLPGVRGLPGTKGEKGDIGIGIAGENG 1532
Score = 36.2 bits (82), Expect = 0.027
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 15/78 (19%)
Query: 28 GSPGIPGTPGSHGLPG-----------RDGRDGVKGDPGPPGPMGPPGETPCPPGN--NG 74
G G+PG PG G PG + G G+ G PGP G G G C P +
Sbjct: 1529 GENGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGH--CNPSDCFGA 1586
Query: 75 LPGAPGVPGERGEKGEAG 92
+P P + KG G
Sbjct: 1587 MPMEQQYPPMKTMKGPFG 1604
Score = 28.5 bits (62), Expect = 5.7
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 68 CPPGNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDEE 106
CPP +G + G KG GERG PG P E+
Sbjct: 316 CPPCVHGARDSNVTLAPSGPKGGKGERGLPGPPGSKGEK 354
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/96 (51%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 459 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 515
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGPPG 98
PPG +G PG PG PGE+GEKGE G+ G PG
Sbjct: 516 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPG 551
Score = 72.0 bits (175), Expect = 4e-13
Identities = 37/79 (46%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC-----PPGNNGLPGAPGVP 82
G PG PGTPG G+PG G G +G G PG GP G PPG+ G G G
Sbjct: 622 GRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKK 681
Query: 83 GERGEKGEAGERGPPGLPA 101
G RG KG+ G++G PGL A
Sbjct: 682 GSRGPKGDKGDQGAPGLDA 700
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 273 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 332
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 333 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 370
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 463 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 518
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 519 KDGPPGVKGENGHPGSPGEKGEK 541
Score = 68.9 bits (167), Expect = 4e-12
Identities = 40/90 (44%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD-----------PGPPGPMGPPGETPCPPGNNGLP 76
G PG PG G G G+ G G KG+ PG PGP GPPG PPG G+P
Sbjct: 530 GHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG----PPGLQGVP 585
Query: 77 GAPG------VPGERGEKGEAGERGPPGLP 100
G G GE+G +GE G+RGP GLP
Sbjct: 586 GPKGEAGLDGAKGEKGFQGEKGDRGPLGLP 615
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G G+PG G GL G G G +G+ G GP+G PG + PG G PG GVPG
Sbjct: 580 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPA 639
Query: 86 GEKGEAGERGPPGL 99
G KGE G +G PG+
Sbjct: 640 GPKGERGSKGDPGM 653
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 293 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 352
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 353 GEKGAEGSPGLPGL 366
Score = 66.6 bits (161), Expect = 2e-11
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 19/87 (21%)
Query: 28 GSPGIPGTPGSHGLPGR-----------------DGRDGVKGDPGPPGPMGPPGET--PC 68
G PG+PG G+ G+PGR G+ G +G PG PGP+G G+ P
Sbjct: 128 GRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPG 187
Query: 69 PPGNNGLPGAPGVPGERGEKGEAGERG 95
P G+ GL G PG PG +G+KGE G+ G
Sbjct: 188 PKGDMGLTGPPGQPGPQGQKGEKGQCG 214
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 333 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 392
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 393 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 436
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 437 EPGKGEMVDYNGNINEALQE 456
Score = 65.9 bits (159), Expect = 3e-11
Identities = 39/89 (43%), Positives = 42/89 (47%), Gaps = 18/89 (20%)
Query: 26 CVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP--------GPMGPPGETPCPPGNNGLPG 77
C PG PG G GLPG G G+ G G P GP GPPG+ PG G PG
Sbjct: 117 CNCPPGPPGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQ----PGTRGFPG 172
Query: 78 AP------GVPGERGEKGEAGERGPPGLP 100
P G PG G KG+ G GPPG P
Sbjct: 173 FPGPIGLDGKPGHPGPKGDMGLTGPPGQP 201
Score = 64.3 bits (155), Expect = 9e-11
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G G PG PG+ G PG G G+ G PG PGP G G T G PG PG G++G
Sbjct: 156 IGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQKG 208
Query: 87 EKGEAGE 93
EKG+ GE
Sbjct: 209 EKGQCGE 215
Score = 64.3 bits (155), Expect = 9e-11
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G G G GLPG G DG G PG PGP+G PG P G G G PG+ G G
Sbjct: 601 GFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG-PKGERGSKGDPGMTGPTGA 659
Query: 88 KGEAGERGPPG 98
G G GPPG
Sbjct: 660 AGLPGLHGPPG 670
Score = 60.1 bits (144), Expect = 2e-09
Identities = 38/95 (40%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP---------GPMGPPGETPC------ 68
D G G G G G G G G+ G PGPP GP GP GE
Sbjct: 594 DGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGM 653
Query: 69 --PPGNNGLPGAPGVPGE---RGEKGEAGERGPPG 98
P G GLPG G PG+ RGE+G+ G RGP G
Sbjct: 654 TGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKG 688
Score = 59.7 bits (143), Expect = 2e-09
Identities = 31/66 (46%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 43 GRDGRDGVKGDPGPPGPMGPPGE-----TPCPPGNNGLPGAPGV---PGERGEKGEAGER 94
G + ++G PGPPGP GP G P P G GLPG PG PG +G G GER
Sbjct: 261 GEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGER 320
Query: 95 GPPGLP 100
G PG+P
Sbjct: 321 GMPGMP 326
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 268 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 323
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 324 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 355
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 366 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 425
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 426 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 485
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 486 EIGLPGPPGHDGEKGPRGKPGDM 508
Score = 52.8 bits (125), Expect = 3e-07
Identities = 36/95 (37%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG--VKGDPGPPGPMGPPG--ETPCPPGNNGLP------- 76
G G G+PG G G G G V G PGP GP GPPG P P G GL
Sbjct: 542 GETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKG 601
Query: 77 -----------GAPGVPGERGEKGEAGERGPPGLP 100
G PG G G G G GP G+P
Sbjct: 602 FQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVP 636
Score = 47.8 bits (112), Expect = 9e-06
Identities = 29/64 (45%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 41 LPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGERGEKGEA--GERGP 96
L R R+ K PG P GPPG T P PG+ G G PG G G+ G + G RGP
Sbjct: 102 LHSRRRREAPKTSPGCNCPPGPPGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGP 161
Query: 97 PGLP 100
PG P
Sbjct: 162 PGQP 165
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP 76
G G PG G+ G G+ G G KGD G G P + PCP G +GLP
Sbjct: 664 GLHGPPGDKGNRGERGKKGSRGPKGDKGDQG--APGLDAPCPLGEDGLP 710
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/96 (51%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 397 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 453
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGPPG 98
PPG +G PG PG PGE+GEKGE G+ G PG
Sbjct: 454 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPG 489
Score = 72.0 bits (175), Expect = 4e-13
Identities = 37/79 (46%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC-----PPGNNGLPGAPGVP 82
G PG PGTPG G+PG G G +G G PG GP G PPG+ G G G
Sbjct: 560 GRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKK 619
Query: 83 GERGEKGEAGERGPPGLPA 101
G RG KG+ G++G PGL A
Sbjct: 620 GSRGPKGDKGDQGAPGLDA 638
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 211 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 270
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 271 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 308
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 401 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 456
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 457 KDGPPGVKGENGHPGSPGEKGEK 479
Score = 68.9 bits (167), Expect = 4e-12
Identities = 40/90 (44%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD-----------PGPPGPMGPPGETPCPPGNNGLP 76
G PG PG G G G+ G G KG+ PG PGP GPPG PPG G+P
Sbjct: 468 GHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG----PPGLQGVP 523
Query: 77 GAPG------VPGERGEKGEAGERGPPGLP 100
G G GE+G +GE G+RGP GLP
Sbjct: 524 GPKGEAGLDGAKGEKGFQGEKGDRGPLGLP 553
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G G+PG G GL G G G +G+ G GP+G PG + PG G PG GVPG
Sbjct: 518 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPA 577
Query: 86 GEKGEAGERGPPGL 99
G KGE G +G PG+
Sbjct: 578 GPKGERGSKGDPGM 591
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 231 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 290
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 291 GEKGAEGSPGLPGL 304
Score = 67.8 bits (164), Expect = 8e-12
Identities = 40/94 (42%), Positives = 46/94 (48%), Gaps = 20/94 (21%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDG------------VKGDPGPPGPMGPPGE-----TPCP 69
+G G PG PG G G G+ G ++G PGPPGP GP G P P
Sbjct: 171 MGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGP 230
Query: 70 PGNNGLPGAPGV---PGERGEKGEAGERGPPGLP 100
G GLPG PG PG +G G GERG PG+P
Sbjct: 231 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMP 264
Score = 67.4 bits (163), Expect = 1e-11
Identities = 37/86 (43%), Positives = 44/86 (51%), Gaps = 19/86 (22%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G G PG PG+ G PG G G+ G PG PGP G G T G PG PG G++G
Sbjct: 135 IGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQKG 187
Query: 87 EKGEAGE------------RGPPGLP 100
EKG+ GE +GPPG P
Sbjct: 188 EKGQCGEYPHRGEQSQASIQGPPGPP 213
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 271 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 330
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 331 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 374
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 375 EPGKGEMVDYNGNINEALQE 394
Score = 64.3 bits (155), Expect = 9e-11
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G G G GLPG G DG G PG PGP+G PG P G G G PG+ G G
Sbjct: 539 GFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG-PKGERGSKGDPGMTGPTGA 597
Query: 88 KGEAGERGPPG 98
G G GPPG
Sbjct: 598 AGLPGLHGPPG 608
Score = 61.2 bits (147), Expect = 8e-10
Identities = 39/94 (41%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 20 CEVKDVCVGSPGIPGTP--GSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPG 77
C GSPG G G G PG+ G G G PGP G G PG P P G+ GL G
Sbjct: 117 CNCPPAPQGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGH-PGPKGDMGLTG 175
Query: 78 APGVPGERGEKGEAGERGPPGLPAHLDEELQATL 111
PG PG +G+ GE+G G H E+ QA++
Sbjct: 176 PPGQPGP---QGQKGEKGQCGEYPHRGEQSQASI 206
Score = 60.1 bits (144), Expect = 2e-09
Identities = 38/95 (40%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP---------GPMGPPGETPC------ 68
D G G G G G G G G+ G PGPP GP GP GE
Sbjct: 532 DGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGM 591
Query: 69 --PPGNNGLPGAPGVPGE---RGEKGEAGERGPPG 98
P G GLPG G PG+ RGE+G+ G RGP G
Sbjct: 592 TGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKG 626
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 206 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 261
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 262 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 293
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 304 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 363
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 364 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 423
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 424 EIGLPGPPGHDGEKGPRGKPGDM 446
Score = 52.8 bits (125), Expect = 3e-07
Identities = 36/95 (37%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG--VKGDPGPPGPMGPPG--ETPCPPGNNGLP------- 76
G G G+PG G G G G V G PGP GP GPPG P P G GL
Sbjct: 480 GETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKG 539
Query: 77 -----------GAPGVPGERGEKGEAGERGPPGLP 100
G PG G G G G GP G+P
Sbjct: 540 FQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVP 574
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP 76
G G PG G+ G G+ G G KGD G G P + PCP G +GLP
Sbjct: 602 GLHGPPGDKGNRGERGKKGSRGPKGDKGDQG--APGLDAPCPLGEDGLP 648
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/96 (51%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 399 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 455
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGPPG 98
PPG +G PG PG PGE+GEKGE G+ G PG
Sbjct: 456 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPG 491
Score = 72.0 bits (175), Expect = 4e-13
Identities = 37/79 (46%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC-----PPGNNGLPGAPGVP 82
G PG PGTPG G+PG G G +G G PG GP G PPG+ G G G
Sbjct: 562 GRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKK 621
Query: 83 GERGEKGEAGERGPPGLPA 101
G RG KG+ G++G PGL A
Sbjct: 622 GSRGPKGDKGDQGAPGLDA 640
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 213 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 272
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 273 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 310
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 403 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 458
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 459 KDGPPGVKGENGHPGSPGEKGEK 481
Score = 68.9 bits (167), Expect = 4e-12
Identities = 40/90 (44%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD-----------PGPPGPMGPPGETPCPPGNNGLP 76
G PG PG G G G+ G G KG+ PG PGP GPPG PPG G+P
Sbjct: 470 GHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG----PPGLQGVP 525
Query: 77 GAPG------VPGERGEKGEAGERGPPGLP 100
G G GE+G +GE G+RGP GLP
Sbjct: 526 GPKGEAGLDGAKGEKGFQGEKGDRGPLGLP 555
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G G+PG G GL G G G +G+ G GP+G PG + PG G PG GVPG
Sbjct: 520 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPA 579
Query: 86 GEKGEAGERGPPGL 99
G KGE G +G PG+
Sbjct: 580 GPKGERGSKGDPGM 593
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 233 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 292
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 293 GEKGAEGSPGLPGL 306
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 273 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 332
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 333 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 376
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 377 EPGKGEMVDYNGNINEALQE 396
Score = 64.3 bits (155), Expect = 9e-11
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G G G GLPG G DG G PG PGP+G PG P G G G PG+ G G
Sbjct: 541 GFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG-PKGERGSKGDPGMTGPTGA 599
Query: 88 KGEAGERGPPG 98
G G GPPG
Sbjct: 600 AGLPGLHGPPG 610
Score = 60.8 bits (146), Expect = 1e-09
Identities = 32/68 (47%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 41 LPGRDGRDGVKGDPGPPGPMGPPGE-----TPCPPGNNGLPGAPGV---PGERGEKGEAG 92
L G + ++G PGPPGP GP G P P G GLPG PG PG +G G G
Sbjct: 199 LKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKG 258
Query: 93 ERGPPGLP 100
ERG PG+P
Sbjct: 259 ERGMPGMP 266
Score = 60.1 bits (144), Expect = 2e-09
Identities = 31/68 (45%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 26 CVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGER 85
C P G PG+ G PG G G+ G PG PGP G G T G PG PG G++
Sbjct: 117 CNCPPVFQGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQK 169
Query: 86 GEKGEAGE 93
GEKG+ GE
Sbjct: 170 GEKGQCGE 177
Score = 60.1 bits (144), Expect = 2e-09
Identities = 38/95 (40%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP---------GPMGPPGETPC------ 68
D G G G G G G G G+ G PGPP GP GP GE
Sbjct: 534 DGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGM 593
Query: 69 --PPGNNGLPGAPGVPGE---RGEKGEAGERGPPG 98
P G GLPG G PG+ RGE+G+ G RGP G
Sbjct: 594 TGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKG 628
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 208 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 263
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 264 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 295
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 306 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 365
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 366 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 425
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 426 EIGLPGPPGHDGEKGPRGKPGDM 448
Score = 54.3 bits (129), Expect = 1e-07
Identities = 32/67 (47%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 29 SPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGEK 88
SPG P G P G G G PGP G G PG P P G+ GL G PG PG +G+K
Sbjct: 114 SPGCNCPPVFQGQP---GTRGFPGFPGPIGLDGKPGH-PGPKGDMGLTGPPGQPGPQGQK 169
Query: 89 GEAGERG 95
GE G+ G
Sbjct: 170 GEKGQCG 176
Score = 52.8 bits (125), Expect = 3e-07
Identities = 36/95 (37%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG--VKGDPGPPGPMGPPG--ETPCPPGNNGLP------- 76
G G G+PG G G G G V G PGP GP GPPG P P G GL
Sbjct: 482 GETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKG 541
Query: 77 -----------GAPGVPGERGEKGEAGERGPPGLP 100
G PG G G G G GP G+P
Sbjct: 542 FQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVP 576
Score = 46.2 bits (108), Expect = 3e-05
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 13/103 (12%)
Query: 35 TPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGER 94
+PG + P G+ G +G PG PGP+G L G PG PG +G+ G G
Sbjct: 114 SPGCNCPPVFQGQPGTRGFPGFPGPIG-------------LDGKPGHPGPKGDMGLTGPP 160
Query: 95 GPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEK 137
G PG E+ Q + R + AL I GE+
Sbjct: 161 GQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQ 203
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP 76
G G PG G+ G G+ G G KGD G G P + PCP G +GLP
Sbjct: 604 GLHGPPGDKGNRGERGKKGSRGPKGDKGDQG--APGLDAPCPLGEDGLP 650
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/96 (51%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 402 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 458
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGPPG 98
PPG +G PG PG PGE+GEKGE G+ G PG
Sbjct: 459 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPG 494
Score = 72.0 bits (175), Expect = 4e-13
Identities = 37/79 (46%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC-----PPGNNGLPGAPGVP 82
G PG PGTPG G+PG G G +G G PG GP G PPG+ G G G
Sbjct: 565 GRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKK 624
Query: 83 GERGEKGEAGERGPPGLPA 101
G RG KG+ G++G PGL A
Sbjct: 625 GSRGPKGDKGDQGAPGLDA 643
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 216 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 275
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 276 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 313
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 406 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 461
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 462 KDGPPGVKGENGHPGSPGEKGEK 484
Score = 68.9 bits (167), Expect = 4e-12
Identities = 40/90 (44%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD-----------PGPPGPMGPPGETPCPPGNNGLP 76
G PG PG G G G+ G G KG+ PG PGP GPPG PPG G+P
Sbjct: 473 GHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG----PPGLQGVP 528
Query: 77 GAPG------VPGERGEKGEAGERGPPGLP 100
G G GE+G +GE G+RGP GLP
Sbjct: 529 GPKGEAGLDGAKGEKGFQGEKGDRGPLGLP 558
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G G+PG G GL G G G +G+ G GP+G PG + PG G PG GVPG
Sbjct: 523 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPA 582
Query: 86 GEKGEAGERGPPGL 99
G KGE G +G PG+
Sbjct: 583 GPKGERGSKGDPGM 596
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 236 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 295
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 296 GEKGAEGSPGLPGL 309
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 276 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 335
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 336 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 379
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 380 EPGKGEMVDYNGNINEALQE 399
Score = 64.3 bits (155), Expect = 9e-11
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G G G GLPG G DG G PG PGP+G PG P G G G PG+ G G
Sbjct: 544 GFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG-PKGERGSKGDPGMTGPTGA 602
Query: 88 KGEAGERGPPG 98
G G GPPG
Sbjct: 603 AGLPGLHGPPG 613
Score = 60.1 bits (144), Expect = 2e-09
Identities = 31/68 (45%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 26 CVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGER 85
C P G PG+ G PG G G+ G PG PGP G G T G PG PG G++
Sbjct: 117 CNCPPVFQGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQK 169
Query: 86 GEKGEAGE 93
GEKG+ GE
Sbjct: 170 GEKGQCGE 177
Score = 60.1 bits (144), Expect = 2e-09
Identities = 38/95 (40%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP---------GPMGPPGETPC------ 68
D G G G G G G G G+ G PGPP GP GP GE
Sbjct: 537 DGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGM 596
Query: 69 --PPGNNGLPGAPGVPGE---RGEKGEAGERGPPG 98
P G GLPG G PG+ RGE+G+ G RGP G
Sbjct: 597 TGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKG 631
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 211 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 266
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 267 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 298
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 309 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 368
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 369 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 428
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 429 EIGLPGPPGHDGEKGPRGKPGDM 451
Score = 56.2 bits (134), Expect = 3e-08
Identities = 40/115 (34%), Positives = 42/115 (36%), Gaps = 42/115 (36%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD------PGPPGPMGPPGETP-------------- 67
G+ G PG PG GL G+ G G KGD PG PGP G GE
Sbjct: 128 GTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRLLPLLN 187
Query: 68 ----CPP------------------GNNGLPGAPGVPGERGEKGEAGERGPPGLP 100
PP G G PG PG G G G G GPPGLP
Sbjct: 188 SVRLAPPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLP 242
Score = 54.3 bits (129), Expect = 1e-07
Identities = 32/67 (47%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 29 SPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGEK 88
SPG P G P G G G PGP G G PG P P G+ GL G PG PG +G+K
Sbjct: 114 SPGCNCPPVFQGQP---GTRGFPGFPGPIGLDGKPGH-PGPKGDMGLTGPPGQPGPQGQK 169
Query: 89 GEAGERG 95
GE G+ G
Sbjct: 170 GEKGQCG 176
Score = 53.9 bits (128), Expect = 1e-07
Identities = 42/131 (32%), Positives = 48/131 (36%), Gaps = 57/131 (43%)
Query: 27 VGSPGIPGTPGSH------GLPGRDGRDGVKGD--------------------------- 53
+G G PG PG G PG+ G G KG+
Sbjct: 139 IGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIK 198
Query: 54 -------------PGPPGPMGPPGET--------PCPPGNNGLPGAPGV---PGERGEKG 89
GPPGP GPPG + P P G GLPG PG PG +G G
Sbjct: 199 RRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHG 258
Query: 90 EAGERGPPGLP 100
GERG PG+P
Sbjct: 259 RKGERGMPGMP 269
Score = 52.8 bits (125), Expect = 3e-07
Identities = 36/95 (37%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG--VKGDPGPPGPMGPPG--ETPCPPGNNGLP------- 76
G G G+PG G G G G V G PGP GP GPPG P P G GL
Sbjct: 485 GETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKG 544
Query: 77 -----------GAPGVPGERGEKGEAGERGPPGLP 100
G PG G G G G GP G+P
Sbjct: 545 FQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVP 579
Score = 51.6 bits (122), Expect = 6e-07
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 35 TPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGER 94
+PG + P G+ G +G PG PGP+G G+ P PG G G G PG+ G +G+ GE+
Sbjct: 114 SPGCNCPPVFQGQPGTRGFPGFPGPIGLDGK-PGHPGPKGDMGLTGPPGQPGPQGQKGEK 172
Query: 95 GPPGLPAH 102
G G H
Sbjct: 173 GQCGEYPH 180
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP 76
G G PG G+ G G+ G G KGD G G P + PCP G +GLP
Sbjct: 607 GLHGPPGDKGNRGERGKKGSRGPKGDKGDQG--APGLDAPCPLGEDGLP 653
Score = 33.9 bits (76), Expect = 0.14
Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 13/54 (24%)
Query: 59 PMGPPGETPCPPGNNGLPGA------------PGVPGERGEKGEAGERGPPGLP 100
P PG CPP G PG G PG G KG+ G GPPG P
Sbjct: 111 PKTSPG-CNCPPVFQGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQP 163
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/96 (51%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 406 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 462
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGPPG 98
PPG +G PG PG PGE+GEKGE G+ G PG
Sbjct: 463 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPG 498
Score = 72.0 bits (175), Expect = 4e-13
Identities = 37/79 (46%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC-----PPGNNGLPGAPGVP 82
G PG PGTPG G+PG G G +G G PG GP G PPG+ G G G
Sbjct: 569 GRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKK 628
Query: 83 GERGEKGEAGERGPPGLPA 101
G RG KG+ G++G PGL A
Sbjct: 629 GSRGPKGDKGDQGAPGLDA 647
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 220 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 279
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 280 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 317
Score = 69.3 bits (168), Expect = 3e-12
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 28 GSPGIPGTPGSHGLP-----GRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVP 82
G PG+PG+PG GL G G+ G +G PG PGP+G G+ P PG G G G P
Sbjct: 128 GRPGLPGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGK-PGHPGPKGDMGLTGPP 186
Query: 83 GERGEKGEAGERGPPGLPAHLDEELQATL 111
G+ G +G+ GE+G G H E+ QA++
Sbjct: 187 GQPGPQGQKGEKGQCGEYPHRGEQSQASI 215
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 410 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 465
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 466 KDGPPGVKGENGHPGSPGEKGEK 488
Score = 68.9 bits (167), Expect = 4e-12
Identities = 40/90 (44%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD-----------PGPPGPMGPPGETPCPPGNNGLP 76
G PG PG G G G+ G G KG+ PG PGP GPPG PPG G+P
Sbjct: 477 GHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG----PPGLQGVP 532
Query: 77 GAPG------VPGERGEKGEAGERGPPGLP 100
G G GE+G +GE G+RGP GLP
Sbjct: 533 GPKGEAGLDGAKGEKGFQGEKGDRGPLGLP 562
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G G+PG G GL G G G +G+ G GP+G PG + PG G PG GVPG
Sbjct: 527 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPA 586
Query: 86 GEKGEAGERGPPGL 99
G KGE G +G PG+
Sbjct: 587 GPKGERGSKGDPGM 600
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 240 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 299
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 300 GEKGAEGSPGLPGL 313
Score = 67.8 bits (164), Expect = 8e-12
Identities = 40/94 (42%), Positives = 46/94 (48%), Gaps = 20/94 (21%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDG------------VKGDPGPPGPMGPPGE-----TPCP 69
+G G PG PG G G G+ G ++G PGPPGP GP G P P
Sbjct: 180 MGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGP 239
Query: 70 PGNNGLPGAPGV---PGERGEKGEAGERGPPGLP 100
G GLPG PG PG +G G GERG PG+P
Sbjct: 240 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMP 273
Score = 67.4 bits (163), Expect = 1e-11
Identities = 37/86 (43%), Positives = 44/86 (51%), Gaps = 19/86 (22%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G G PG PG+ G PG G G+ G PG PGP G G T G PG PG G++G
Sbjct: 144 IGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQKG 196
Query: 87 EKGEAGE------------RGPPGLP 100
EKG+ GE +GPPG P
Sbjct: 197 EKGQCGEYPHRGEQSQASIQGPPGPP 222
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 280 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 339
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 340 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 383
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 384 EPGKGEMVDYNGNINEALQE 403
Score = 64.3 bits (155), Expect = 9e-11
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G G G GLPG G DG G PG PGP+G PG P G G G PG+ G G
Sbjct: 548 GFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG-PKGERGSKGDPGMTGPTGA 606
Query: 88 KGEAGERGPPG 98
G G GPPG
Sbjct: 607 AGLPGLHGPPG 617
Score = 60.1 bits (144), Expect = 2e-09
Identities = 38/95 (40%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP---------GPMGPPGETPC------ 68
D G G G G G G G G+ G PGPP GP GP GE
Sbjct: 541 DGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGM 600
Query: 69 --PPGNNGLPGAPGVPGE---RGEKGEAGERGPPG 98
P G GLPG G PG+ RGE+G+ G RGP G
Sbjct: 601 TGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKG 635
Score = 59.7 bits (143), Expect = 2e-09
Identities = 36/80 (45%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 29 SPGIPGTPGSHGLPGRDGRDGVKGDPGPP--GPMGPPGETPCPPGNNGLPGAP------G 80
SPG P G GR G G GD G GP GPPG+ PG G PG P G
Sbjct: 114 SPGCNCPPAFQGPTGRPGLPGSPGDAGLSIIGPRGPPGQ----PGTRGFPGFPGPIGLDG 169
Query: 81 VPGERGEKGEAGERGPPGLP 100
PG G KG+ G GPPG P
Sbjct: 170 KPGHPGPKGDMGLTGPPGQP 189
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 215 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 270
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 271 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 302
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 313 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 372
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 373 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 432
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 433 EIGLPGPPGHDGEKGPRGKPGDM 455
Score = 52.8 bits (125), Expect = 3e-07
Identities = 36/95 (37%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG--VKGDPGPPGPMGPPG--ETPCPPGNNGLP------- 76
G G G+PG G G G G V G PGP GP GPPG P P G GL
Sbjct: 489 GETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKG 548
Query: 77 -----------GAPGVPGERGEKGEAGERGPPGLP 100
G PG G G G G GP G+P
Sbjct: 549 FQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVP 583
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP 76
G G PG G+ G G+ G G KGD G G P + PCP G +GLP
Sbjct: 611 GLHGPPGDKGNRGERGKKGSRGPKGDKGDQG--APGLDAPCPLGEDGLP 657
Score = 40.0 bits (92), Expect = 0.002
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 59 PMGPPGETPCPPGNNGLPGAPGVPGERGEKGEA--GERGPPGLP 100
P PG CPP G G PG+PG G+ G + G RGPPG P
Sbjct: 111 PKTSPG-CNCPPAFQGPTGRPGLPGSPGDAGLSIIGPRGPPGQP 153
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/96 (51%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 459 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 515
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGPPG 98
PPG +G PG PG PGE+GEKGE G+ G PG
Sbjct: 516 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPG 551
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 273 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 332
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 333 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 370
Score = 70.1 bits (170), Expect = 2e-12
Identities = 36/79 (45%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC-----PPGNNGLPGAPGVP 82
G G+PGTPG G+PG G G +G G PG GP G PPG+ G G G
Sbjct: 596 GPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKK 655
Query: 83 GERGEKGEAGERGPPGLPA 101
G RG KG+ G++G PGL A
Sbjct: 656 GSRGPKGDKGDQGAPGLDA 674
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 463 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 518
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 519 KDGPPGVKGENGHPGSPGEKGEK 541
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 293 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 352
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 353 GEKGAEGSPGLPGL 366
Score = 66.6 bits (161), Expect = 2e-11
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 19/87 (21%)
Query: 28 GSPGIPGTPGSHGLPGR-----------------DGRDGVKGDPGPPGPMGPPGET--PC 68
G PG+PG G+ G+PGR G+ G +G PG PGP+G G+ P
Sbjct: 128 GRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPG 187
Query: 69 PPGNNGLPGAPGVPGERGEKGEAGERG 95
P G+ GL G PG PG +G+KGE G+ G
Sbjct: 188 PKGDMGLTGPPGQPGPQGQKGEKGQCG 214
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 333 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 392
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 393 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 436
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 437 EPGKGEMVDYNGNINEALQE 456
Score = 66.2 bits (160), Expect = 2e-11
Identities = 39/89 (43%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 20 CEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP--GPMGPPGETPCPPGNNGLPG 77
C G G PG PG G G GR G GD G GP GPPG+ PG G PG
Sbjct: 117 CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQ----PGTRGFPG 172
Query: 78 AP------GVPGERGEKGEAGERGPPGLP 100
P G PG G KG+ G GPPG P
Sbjct: 173 FPGPIGLDGKPGHPGPKGDMGLTGPPGQP 201
Score = 66.2 bits (160), Expect = 2e-11
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G+PG G GL G G G +G+ G GP+G PG PG G+PG G GERG
Sbjct: 566 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPG----TPGPIGVPGPAGPKGERGS 621
Query: 88 KGEAGERGPPG 98
KG+ G GP G
Sbjct: 622 KGDPGMTGPTG 632
Score = 64.3 bits (155), Expect = 9e-11
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G G PG PG+ G PG G G+ G PG PGP G G T G PG PG G++G
Sbjct: 156 IGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQKG 208
Query: 87 EKGEAGE 93
EKG+ GE
Sbjct: 209 EKGQCGE 215
Score = 59.7 bits (143), Expect = 2e-09
Identities = 31/66 (46%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 43 GRDGRDGVKGDPGPPGPMGPPGE-----TPCPPGNNGLPGAPGV---PGERGEKGEAGER 94
G + ++G PGPPGP GP G P P G GLPG PG PG +G G GER
Sbjct: 261 GEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGER 320
Query: 95 GPPGLP 100
G PG+P
Sbjct: 321 GMPGMP 326
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 268 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 323
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 324 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 355
Score = 58.2 bits (139), Expect = 7e-09
Identities = 37/84 (44%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGP------MGPPGETPCPPGNNGLPG 77
D G G G G G G G G G PGP GP G PG T P G GLPG
Sbjct: 580 DGAKGEKGFQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTG-PTGAAGLPG 638
Query: 78 APGVPGE---RGEKGEAGERGPPG 98
G PG+ RGE+G+ G RGP G
Sbjct: 639 LHGPPGDKGNRGERGKKGSRGPKG 662
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 366 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 425
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 426 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 485
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 486 EIGLPGPPGHDGEKGPRGKPGDM 508
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP 76
G G PG G+ G G+ G G KGD G G P + PCP G +GLP
Sbjct: 638 GLHGPPGDKGNRGERGKKGSRGPKGDKGDQG--APGLDAPCPLGEDGLP 684
Score = 37.4 bits (85), Expect = 0.012
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 59 PMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPG 98
P PG CPP G G PG+PG++G G G G PG
Sbjct: 111 PKTSPG-CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPG 149
>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
Length = 686
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/96 (51%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 440 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 496
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGPPG 98
PPG +G PG PG PGE+GEKGE G+ G PG
Sbjct: 497 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPG 532
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 254 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 313
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 314 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 351
Score = 70.1 bits (170), Expect = 2e-12
Identities = 36/79 (45%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC-----PPGNNGLPGAPGVP 82
G G+PGTPG G+PG G G +G G PG GP G PPG+ G G G
Sbjct: 591 GPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKK 650
Query: 83 GERGEKGEAGERGPPGLPA 101
G RG KG+ G++G PGL A
Sbjct: 651 GSRGPKGDKGDQGAPGLDA 669
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 444 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 499
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 500 KDGPPGVKGENGHPGSPGEKGEK 522
Score = 68.9 bits (167), Expect = 4e-12
Identities = 40/90 (44%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD-----------PGPPGPMGPPGETPCPPGNNGLP 76
G PG PG G G G+ G G KG+ PG PGP GPPG PPG G+P
Sbjct: 511 GHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG----PPGLQGVP 566
Query: 77 GAPG------VPGERGEKGEAGERGPPGLP 100
G G GE+G +GE G+RGP GLP
Sbjct: 567 GPKGEAGLDGAKGEKGFQGEKGDRGPLGLP 596
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 274 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 333
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 334 GEKGAEGSPGLPGL 347
Score = 67.8 bits (164), Expect = 8e-12
Identities = 38/77 (49%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG--VKGDPGPPGPMGPPG--ETPCPPGNNGLPGAPGVPG 83
G G G+PG G G G G V G PGP GP GPPG P P G GL GA G G
Sbjct: 523 GETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKG 582
Query: 84 ERGEKGEAGERGPPGLP 100
+GEKG+ G G PG P
Sbjct: 583 FQGEKGDRGPLGLPGTP 599
Score = 66.6 bits (161), Expect = 2e-11
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 19/87 (21%)
Query: 28 GSPGIPGTPGSHGLPGR-----------------DGRDGVKGDPGPPGPMGPPGET--PC 68
G PG+PG G+ G+PGR G+ G +G PG PGP+G G+ P
Sbjct: 128 GRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPG 187
Query: 69 PPGNNGLPGAPGVPGERGEKGEAGERG 95
P G+ GL G PG PG +G+KGE G+ G
Sbjct: 188 PKGDMGLTGPPGQPGPQGQKGEKGQCG 214
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 314 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 373
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 374 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 417
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 418 EPGKGEMVDYNGNINEALQE 437
Score = 66.2 bits (160), Expect = 2e-11
Identities = 39/89 (43%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 20 CEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP--GPMGPPGETPCPPGNNGLPG 77
C G G PG PG G G GR G GD G GP GPPG+ PG G PG
Sbjct: 117 CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQ----PGTRGFPG 172
Query: 78 APGV------PGERGEKGEAGERGPPGLP 100
PG PG G KG+ G GPPG P
Sbjct: 173 FPGPIGLDGKPGHPGPKGDMGLTGPPGQP 201
Score = 66.2 bits (160), Expect = 2e-11
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G+PG G GL G G G +G+ G GP+G PG PG G+PG G GERG
Sbjct: 561 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPG----TPGPIGVPGPAGPKGERGS 616
Query: 88 KGEAGERGPPG 98
KG+ G GP G
Sbjct: 617 KGDPGMTGPTG 627
Score = 64.3 bits (155), Expect = 9e-11
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G G PG PG+ G PG G G+ G PG PGP G G T G PG PG G++G
Sbjct: 156 IGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQKG 208
Query: 87 EKGEAGE 93
EKG+ GE
Sbjct: 209 EKGQCGE 215
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 249 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 304
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 305 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 336
Score = 58.2 bits (139), Expect = 7e-09
Identities = 40/101 (39%), Positives = 44/101 (43%), Gaps = 31/101 (30%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD---------------------PGPPGP------M 60
G PG+ G PG G G DG G KG PGP GP
Sbjct: 558 GPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSK 617
Query: 61 GPPGETPCPPGNNGLPGAPGVPGE---RGEKGEAGERGPPG 98
G PG T P G GLPG G PG+ RGE+G+ G RGP G
Sbjct: 618 GDPGMTG-PTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKG 657
Score = 57.8 bits (138), Expect = 9e-09
Identities = 43/127 (33%), Positives = 48/127 (37%), Gaps = 54/127 (42%)
Query: 28 GSPGIPGTPGSHGL---PGRDGRDGVKGD------------------------------- 53
G PG PG G GL PG+ G G KG+
Sbjct: 181 GKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTF 240
Query: 54 ---------PGPPGPMGPPGET--------PCPPGNNGLPGAPGV---PGERGEKGEAGE 93
GPPGP GPPG + P P G GLPG PG PG +G G GE
Sbjct: 241 QGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGE 300
Query: 94 RGPPGLP 100
RG PG+P
Sbjct: 301 RGMPGMP 307
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 347 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 406
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 407 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 466
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 467 EIGLPGPPGHDGEKGPRGKPGDM 489
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP 76
G G PG G+ G G+ G G KGD G G P + PCP G +GLP
Sbjct: 633 GLHGPPGDKGNRGERGKKGSRGPKGDKGDQG--APGLDAPCPLGEDGLP 679
Score = 37.4 bits (85), Expect = 0.012
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 59 PMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPG 98
P PG CPP G G PG+PG++G G G G PG
Sbjct: 111 PKTSPG-CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPG 149
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/96 (51%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 418 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 474
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGPPG 98
PPG +G PG PG PGE+GEKGE G+ G PG
Sbjct: 475 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPG 510
Score = 72.0 bits (175), Expect = 4e-13
Identities = 37/79 (46%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC-----PPGNNGLPGAPGVP 82
G PG PGTPG G+PG G G +G G PG GP G PPG+ G G G
Sbjct: 581 GRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKK 640
Query: 83 GERGEKGEAGERGPPGLPA 101
G RG KG+ G++G PGL A
Sbjct: 641 GSRGPKGDKGDQGAPGLDA 659
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 232 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 291
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 292 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 329
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 422 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 477
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 478 KDGPPGVKGENGHPGSPGEKGEK 500
Score = 68.9 bits (167), Expect = 4e-12
Identities = 40/90 (44%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD-----------PGPPGPMGPPGETPCPPGNNGLP 76
G PG PG G G G+ G G KG+ PG PGP GPPG PPG G+P
Sbjct: 489 GHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG----PPGLQGVP 544
Query: 77 GAPG------VPGERGEKGEAGERGPPGLP 100
G G GE+G +GE G+RGP GLP
Sbjct: 545 GPKGEAGLDGAKGEKGFQGEKGDRGPLGLP 574
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G G+PG G GL G G G +G+ G GP+G PG + PG G PG GVPG
Sbjct: 539 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPA 598
Query: 86 GEKGEAGERGPPGL 99
G KGE G +G PG+
Sbjct: 599 GPKGERGSKGDPGM 612
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 252 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 311
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 312 GEKGAEGSPGLPGL 325
Score = 67.8 bits (164), Expect = 8e-12
Identities = 40/94 (42%), Positives = 46/94 (48%), Gaps = 20/94 (21%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDG------------VKGDPGPPGPMGPPGE-----TPCP 69
+G G PG PG G G G+ G ++G PGPPGP GP G P P
Sbjct: 192 MGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGP 251
Query: 70 PGNNGLPGAPGV---PGERGEKGEAGERGPPGLP 100
G GLPG PG PG +G G GERG PG+P
Sbjct: 252 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMP 285
Score = 67.4 bits (163), Expect = 1e-11
Identities = 37/86 (43%), Positives = 44/86 (51%), Gaps = 19/86 (22%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G G PG PG+ G PG G G+ G PG PGP G G T G PG PG G++G
Sbjct: 156 IGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQKG 208
Query: 87 EKGEAGE------------RGPPGLP 100
EKG+ GE +GPPG P
Sbjct: 209 EKGQCGEYPHRGEQSQASIQGPPGPP 234
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 292 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 351
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 352 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 395
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 396 EPGKGEMVDYNGNINEALQE 415
Score = 66.2 bits (160), Expect = 2e-11
Identities = 39/89 (43%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 20 CEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP--GPMGPPGETPCPPGNNGLPG 77
C G G PG PG G G GR G GD G GP GPPG+ PG G PG
Sbjct: 117 CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQ----PGTRGFPG 172
Query: 78 AP------GVPGERGEKGEAGERGPPGLP 100
P G PG G KG+ G GPPG P
Sbjct: 173 FPGPIGLDGKPGHPGPKGDMGLTGPPGQP 201
Score = 65.9 bits (159), Expect = 3e-11
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 18/101 (17%)
Query: 28 GSPGIPGTPGSHGLPGR-----------------DGRDGVKGDPGPPGPMGPPGETPCPP 70
G PG+PG G+ G+PGR G+ G +G PG PGP+G G+ P P
Sbjct: 128 GRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGK-PGHP 186
Query: 71 GNNGLPGAPGVPGERGEKGEAGERGPPGLPAHLDEELQATL 111
G G G G PG+ G +G+ GE+G G H E+ QA++
Sbjct: 187 GPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASI 227
Score = 64.3 bits (155), Expect = 9e-11
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G G G GLPG G DG G PG PGP+G PG P G G G PG+ G G
Sbjct: 560 GFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG-PKGERGSKGDPGMTGPTGA 618
Query: 88 KGEAGERGPPG 98
G G GPPG
Sbjct: 619 AGLPGLHGPPG 629
Score = 60.1 bits (144), Expect = 2e-09
Identities = 38/95 (40%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP---------GPMGPPGETPC------ 68
D G G G G G G G G+ G PGPP GP GP GE
Sbjct: 553 DGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGM 612
Query: 69 --PPGNNGLPGAPGVPGE---RGEKGEAGERGPPG 98
P G GLPG G PG+ RGE+G+ G RGP G
Sbjct: 613 TGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKG 647
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 227 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 282
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 283 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 314
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 325 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 384
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 385 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 444
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 445 EIGLPGPPGHDGEKGPRGKPGDM 467
Score = 52.8 bits (125), Expect = 3e-07
Identities = 36/95 (37%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG--VKGDPGPPGPMGPPG--ETPCPPGNNGLP------- 76
G G G+PG G G G G V G PGP GP GPPG P P G GL
Sbjct: 501 GETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKG 560
Query: 77 -----------GAPGVPGERGEKGEAGERGPPGLP 100
G PG G G G G GP G+P
Sbjct: 561 FQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVP 595
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP 76
G G PG G+ G G+ G G KGD G G P + PCP G +GLP
Sbjct: 623 GLHGPPGDKGNRGERGKKGSRGPKGDKGDQG--APGLDAPCPLGEDGLP 669
Score = 37.4 bits (85), Expect = 0.012
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 59 PMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPG 98
P PG CPP G G PG+PG++G G G G PG
Sbjct: 111 PKTSPG-CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPG 149
>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
Length = 688
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/96 (51%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 430 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 486
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGPPG 98
PPG +G PG PG PGE+GEKGE G+ G PG
Sbjct: 487 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPG 522
Score = 72.0 bits (175), Expect = 4e-13
Identities = 37/79 (46%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC-----PPGNNGLPGAPGVP 82
G PG PGTPG G+PG G G +G G PG GP G PPG+ G G G
Sbjct: 593 GRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKK 652
Query: 83 GERGEKGEAGERGPPGLPA 101
G RG KG+ G++G PGL A
Sbjct: 653 GSRGPKGDKGDQGAPGLDA 671
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 244 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 303
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 304 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 341
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 434 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 489
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 490 KDGPPGVKGENGHPGSPGEKGEK 512
Score = 68.9 bits (167), Expect = 4e-12
Identities = 40/90 (44%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD-----------PGPPGPMGPPGETPCPPGNNGLP 76
G PG PG G G G+ G G KG+ PG PGP GPPG PPG G+P
Sbjct: 501 GHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG----PPGLQGVP 556
Query: 77 GAPG------VPGERGEKGEAGERGPPGLP 100
G G GE+G +GE G+RGP GLP
Sbjct: 557 GPKGEAGLDGAKGEKGFQGEKGDRGPLGLP 586
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G G+PG G GL G G G +G+ G GP+G PG + PG G PG GVPG
Sbjct: 551 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPA 610
Query: 86 GEKGEAGERGPPGL 99
G KGE G +G PG+
Sbjct: 611 GPKGERGSKGDPGM 624
Score = 68.6 bits (166), Expect = 5e-12
Identities = 33/66 (50%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G PG+PG PG+ G PG G G+ G PG PGP G G T G PG PG G++GE
Sbjct: 128 GRPGLPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQKGE 180
Query: 88 KGEAGE 93
KG+ GE
Sbjct: 181 KGQCGE 186
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 264 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 323
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 324 GEKGAEGSPGLPGL 337
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 304 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 363
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 364 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 407
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 408 EPGKGEMVDYNGNINEALQE 427
Score = 65.5 bits (158), Expect = 4e-11
Identities = 34/70 (48%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 26 CVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGER 85
C P G G GLPG+ G G G PGP G G PG P P G+ GL G PG PG +
Sbjct: 117 CNCPPAFQGPTGRPGLPGQPGTRGFPGFPGPIGLDGKPGH-PGPKGDMGLTGPPGQPGPQ 175
Query: 86 GEKGEAGERG 95
G+KGE G+ G
Sbjct: 176 GQKGEKGQCG 185
Score = 64.3 bits (155), Expect = 9e-11
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G G G GLPG G DG G PG PGP+G PG P G G G PG+ G G
Sbjct: 572 GFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG-PKGERGSKGDPGMTGPTGA 630
Query: 88 KGEAGERGPPG 98
G G GPPG
Sbjct: 631 AGLPGLHGPPG 641
Score = 60.1 bits (144), Expect = 2e-09
Identities = 38/95 (40%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP---------GPMGPPGETPC------ 68
D G G G G G G G G+ G PGPP GP GP GE
Sbjct: 565 DGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGM 624
Query: 69 --PPGNNGLPGAPGVPGE---RGEKGEAGERGPPG 98
P G GLPG G PG+ RGE+G+ G RGP G
Sbjct: 625 TGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKG 659
Score = 59.7 bits (143), Expect = 2e-09
Identities = 31/66 (46%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 43 GRDGRDGVKGDPGPPGPMGPPGE-----TPCPPGNNGLPGAPGV---PGERGEKGEAGER 94
G + ++G PGPPGP GP G P P G GLPG PG PG +G G GER
Sbjct: 232 GEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGER 291
Query: 95 GPPGLP 100
G PG+P
Sbjct: 292 GMPGMP 297
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 239 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 294
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 295 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 326
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 337 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 396
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 397 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 456
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 457 EIGLPGPPGHDGEKGPRGKPGDM 479
Score = 52.8 bits (125), Expect = 3e-07
Identities = 36/95 (37%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG--VKGDPGPPGPMGPPG--ETPCPPGNNGLP------- 76
G G G+PG G G G G V G PGP GP GPPG P P G GL
Sbjct: 513 GETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKG 572
Query: 77 -----------GAPGVPGERGEKGEAGERGPPGLP 100
G PG G G G G GP G+P
Sbjct: 573 FQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVP 607
Score = 50.1 bits (118), Expect = 2e-06
Identities = 33/91 (36%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 35 TPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGER 94
+PG + P G G G PG PG G PG PG GL G PG PG +G+ G G
Sbjct: 114 SPGCNCPPAFQGPTGRPGLPGQPGTRGFPGF----PGPIGLDGKPGHPGPKGDMGLTGPP 169
Query: 95 GPPGLPAHLDEELQATLHDFRHQILQTRGAL 125
G PG E+ Q + R + AL
Sbjct: 170 GQPGPQGQKGEKGQCGEYPHRECLSSMPAAL 200
Score = 44.3 bits (103), Expect = 1e-04
Identities = 38/134 (28%), Positives = 41/134 (30%), Gaps = 61/134 (45%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD---------PGPPGPMGPPGETP----------- 67
G+ G PG PG GL G+ G G KGD PGP G G G+
Sbjct: 137 GTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSM 196
Query: 68 -----------------------CPP------------------GNNGLPGAPGVPGERG 86
PP G G PG PG G G
Sbjct: 197 PAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLG 256
Query: 87 EKGEAGERGPPGLP 100
G G GPPGLP
Sbjct: 257 HPGLPGPMGPPGLP 270
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP 76
G G PG G+ G G+ G G KGD G G P + PCP G +GLP
Sbjct: 635 GLHGPPGDKGNRGERGKKGSRGPKGDKGDQG--APGLDAPCPLGEDGLP 681
Score = 37.7 bits (86), Expect = 0.009
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 59 PMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGL---PAH 102
P PG CPP G G PG+PG+ G +G G GP GL P H
Sbjct: 111 PKTSPG-CNCPPAFQGPTGRPGLPGQPGTRGFPGFPGPIGLDGKPGH 156
>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
Length = 703
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/96 (51%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 459 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 515
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGPPG 98
PPG +G PG PG PGE+GEKGE G+ G PG
Sbjct: 516 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPG 551
Score = 72.0 bits (175), Expect = 4e-13
Identities = 37/79 (46%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC-----PPGNNGLPGAPGVP 82
G PG PGTPG G+PG G G +G G PG GP G PPG+ G G G
Sbjct: 608 GRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKK 667
Query: 83 GERGEKGEAGERGPPGLPA 101
G RG KG+ G++G PGL A
Sbjct: 668 GSRGPKGDKGDQGAPGLDA 686
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 273 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 332
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 333 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 370
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 463 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 518
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 519 KDGPPGVKGENGHPGSPGEKGEK 541
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G G+PG G GL G G G +G+ G GP+G PG + PG G PG GVPG
Sbjct: 566 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPA 625
Query: 86 GEKGEAGERGPPGL 99
G KGE G +G PG+
Sbjct: 626 GPKGERGSKGDPGM 639
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 293 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 352
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 353 GEKGAEGSPGLPGL 366
Score = 66.6 bits (161), Expect = 2e-11
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 19/87 (21%)
Query: 28 GSPGIPGTPGSHGLPGR-----------------DGRDGVKGDPGPPGPMGPPGET--PC 68
G PG+PG G+ G+PGR G+ G +G PG PGP+G G+ P
Sbjct: 128 GRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPG 187
Query: 69 PPGNNGLPGAPGVPGERGEKGEAGERG 95
P G+ GL G PG PG +G+KGE G+ G
Sbjct: 188 PKGDMGLTGPPGQPGPQGQKGEKGQCG 214
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 333 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 392
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 393 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 436
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 437 EPGKGEMVDYNGNINEALQE 456
Score = 66.2 bits (160), Expect = 2e-11
Identities = 39/89 (43%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 20 CEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP--GPMGPPGETPCPPGNNGLPG 77
C G G PG PG G G GR G GD G GP GPPG+ PG G PG
Sbjct: 117 CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQ----PGTRGFPG 172
Query: 78 AP------GVPGERGEKGEAGERGPPGLP 100
P G PG G KG+ G GPPG P
Sbjct: 173 FPGPIGLDGKPGHPGPKGDMGLTGPPGQP 201
Score = 64.3 bits (155), Expect = 9e-11
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G G PG PG+ G PG G G+ G PG PGP G G T G PG PG G++G
Sbjct: 156 IGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQKG 208
Query: 87 EKGEAGE 93
EKG+ GE
Sbjct: 209 EKGQCGE 215
Score = 64.3 bits (155), Expect = 9e-11
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G G G GLPG G DG G PG PGP+G PG P G G G PG+ G G
Sbjct: 587 GFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG-PKGERGSKGDPGMTGPTGA 645
Query: 88 KGEAGERGPPG 98
G G GPPG
Sbjct: 646 AGLPGLHGPPG 656
Score = 60.1 bits (144), Expect = 2e-09
Identities = 38/95 (40%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP---------GPMGPPGETPC------ 68
D G G G G G G G G+ G PGPP GP GP GE
Sbjct: 580 DGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGM 639
Query: 69 --PPGNNGLPGAPGVPGE---RGEKGEAGERGPPG 98
P G GLPG G PG+ RGE+G+ G RGP G
Sbjct: 640 TGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKG 674
Score = 59.7 bits (143), Expect = 2e-09
Identities = 31/66 (46%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 43 GRDGRDGVKGDPGPPGPMGPPGE-----TPCPPGNNGLPGAPGV---PGERGEKGEAGER 94
G + ++G PGPPGP GP G P P G GLPG PG PG +G G GER
Sbjct: 261 GEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGER 320
Query: 95 GPPGLP 100
G PG+P
Sbjct: 321 GMPGMP 326
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 268 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 323
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 324 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 355
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 366 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 425
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 426 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 485
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 486 EIGLPGPPGHDGEKGPRGKPGDM 508
Score = 51.6 bits (122), Expect = 6e-07
Identities = 31/75 (41%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
GSPG G G G PG +G GV G G G G GE G+ G G PG G
Sbjct: 548 GSPGEKGEAGEKGNPGAEGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLD 607
Query: 86 GEKGEAGERGPPGLP 100
G G G GP G+P
Sbjct: 608 GRPGPPGTPGPIGVP 622
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP 76
G G PG G+ G G+ G G KGD G G P + PCP G +GLP
Sbjct: 650 GLHGPPGDKGNRGERGKKGSRGPKGDKGDQG--APGLDAPCPLGEDGLP 696
Score = 37.4 bits (85), Expect = 0.012
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 59 PMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPG 98
P PG CPP G G PG+PG++G G G G PG
Sbjct: 111 PKTSPG-CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPG 149
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/96 (51%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 437 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 493
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGPPG 98
PPG +G PG PG PGE+GEKGE G+ G PG
Sbjct: 494 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPG 529
Score = 72.0 bits (175), Expect = 4e-13
Identities = 37/79 (46%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC-----PPGNNGLPGAPGVP 82
G PG PGTPG G+PG G G +G G PG GP G PPG+ G G G
Sbjct: 600 GRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKK 659
Query: 83 GERGEKGEAGERGPPGLPA 101
G RG KG+ G++G PGL A
Sbjct: 660 GSRGPKGDKGDQGAPGLDA 678
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 251 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 310
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 311 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 348
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 441 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 496
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 497 KDGPPGVKGENGHPGSPGEKGEK 519
Score = 68.9 bits (167), Expect = 4e-12
Identities = 40/90 (44%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD-----------PGPPGPMGPPGETPCPPGNNGLP 76
G PG PG G G G+ G G KG+ PG PGP GPPG PPG G+P
Sbjct: 508 GHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG----PPGLQGVP 563
Query: 77 GAPG------VPGERGEKGEAGERGPPGLP 100
G G GE+G +GE G+RGP GLP
Sbjct: 564 GPKGEAGLDGAKGEKGFQGEKGDRGPLGLP 593
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G G+PG G GL G G G +G+ G GP+G PG + PG G PG GVPG
Sbjct: 558 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPA 617
Query: 86 GEKGEAGERGPPGL 99
G KGE G +G PG+
Sbjct: 618 GPKGERGSKGDPGM 631
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 271 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 330
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 331 GEKGAEGSPGLPGL 344
Score = 67.8 bits (164), Expect = 8e-12
Identities = 44/114 (38%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDP--GPPGPMGPPGETPCP--PGNNGLPGAPGVPG 83
G PG+PG G+ G+PGR G G G GP GP G PG P PG GL G PG PG
Sbjct: 128 GRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPG 187
Query: 84 ERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEK 137
+G+ G G G PG E+ Q + R + AL I GE+
Sbjct: 188 PKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQ 241
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 311 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 370
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 371 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 414
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 415 EPGKGEMVDYNGNINEALQE 434
Score = 66.2 bits (160), Expect = 2e-11
Identities = 39/89 (43%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 20 CEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP--GPMGPPGETPCPPGNNGLPG 77
C G G PG PG G G GR G GD G GP GPPG+ PG G PG
Sbjct: 117 CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQ----PGTRGFPG 172
Query: 78 AP------GVPGERGEKGEAGERGPPGLP 100
P G PG G KG+ G GPPG P
Sbjct: 173 FPGPIGLDGKPGHPGPKGDMGLTGPPGQP 201
Score = 64.3 bits (155), Expect = 9e-11
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G G PG PG+ G PG G G+ G PG PGP G G T G PG PG G++G
Sbjct: 156 IGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQKG 208
Query: 87 EKGEAGE 93
EKG+ GE
Sbjct: 209 EKGQCGE 215
Score = 64.3 bits (155), Expect = 9e-11
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G G G GLPG G DG G PG PGP+G PG P G G G PG+ G G
Sbjct: 579 GFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG-PKGERGSKGDPGMTGPTGA 637
Query: 88 KGEAGERGPPG 98
G G GPPG
Sbjct: 638 AGLPGLHGPPG 648
Score = 60.8 bits (146), Expect = 1e-09
Identities = 32/68 (47%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 41 LPGRDGRDGVKGDPGPPGPMGPPGE-----TPCPPGNNGLPGAPGV---PGERGEKGEAG 92
L G + ++G PGPPGP GP G P P G GLPG PG PG +G G G
Sbjct: 237 LKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKG 296
Query: 93 ERGPPGLP 100
ERG PG+P
Sbjct: 297 ERGMPGMP 304
Score = 60.1 bits (144), Expect = 2e-09
Identities = 38/95 (40%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP---------GPMGPPGETPC------ 68
D G G G G G G G G+ G PGPP GP GP GE
Sbjct: 572 DGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGM 631
Query: 69 --PPGNNGLPGAPGVPGE---RGEKGEAGERGPPG 98
P G GLPG G PG+ RGE+G+ G RGP G
Sbjct: 632 TGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKG 666
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 246 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 301
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 302 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 333
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 344 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 403
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 404 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 463
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 464 EIGLPGPPGHDGEKGPRGKPGDM 486
Score = 52.8 bits (125), Expect = 3e-07
Identities = 36/95 (37%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG--VKGDPGPPGPMGPPG--ETPCPPGNNGLP------- 76
G G G+PG G G G G V G PGP GP GPPG P P G GL
Sbjct: 520 GETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKG 579
Query: 77 -----------GAPGVPGERGEKGEAGERGPPGLP 100
G PG G G G G GP G+P
Sbjct: 580 FQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVP 614
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP 76
G G PG G+ G G+ G G KGD G G P + PCP G +GLP
Sbjct: 642 GLHGPPGDKGNRGERGKKGSRGPKGDKGDQG--APGLDAPCPLGEDGLP 688
Score = 37.4 bits (85), Expect = 0.012
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 59 PMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPG 98
P PG CPP G G PG+PG++G G G G PG
Sbjct: 111 PKTSPG-CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPG 149
>gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]
Length = 698
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/96 (51%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 440 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 496
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGPPG 98
PPG +G PG PG PGE+GEKGE G+ G PG
Sbjct: 497 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPG 532
Score = 72.0 bits (175), Expect = 4e-13
Identities = 37/79 (46%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC-----PPGNNGLPGAPGVP 82
G PG PGTPG G+PG G G +G G PG GP G PPG+ G G G
Sbjct: 603 GRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKK 662
Query: 83 GERGEKGEAGERGPPGLPA 101
G RG KG+ G++G PGL A
Sbjct: 663 GSRGPKGDKGDQGAPGLDA 681
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 254 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 313
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 314 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 351
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 444 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 499
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 500 KDGPPGVKGENGHPGSPGEKGEK 522
Score = 68.9 bits (167), Expect = 4e-12
Identities = 40/90 (44%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD-----------PGPPGPMGPPGETPCPPGNNGLP 76
G PG PG G G G+ G G KG+ PG PGP GPPG PPG G+P
Sbjct: 511 GHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG----PPGLQGVP 566
Query: 77 GAPG------VPGERGEKGEAGERGPPGLP 100
G G GE+G +GE G+RGP GLP
Sbjct: 567 GPKGEAGLDGAKGEKGFQGEKGDRGPLGLP 596
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G G+PG G GL G G G +G+ G GP+G PG + PG G PG GVPG
Sbjct: 561 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPA 620
Query: 86 GEKGEAGERGPPGL 99
G KGE G +G PG+
Sbjct: 621 GPKGERGSKGDPGM 634
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 274 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 333
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 334 GEKGAEGSPGLPGL 347
Score = 66.6 bits (161), Expect = 2e-11
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 19/87 (21%)
Query: 28 GSPGIPGTPGSHGLPGR-----------------DGRDGVKGDPGPPGPMGPPGET--PC 68
G PG+PG G+ G+PGR G+ G +G PG PGP+G G+ P
Sbjct: 128 GRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPG 187
Query: 69 PPGNNGLPGAPGVPGERGEKGEAGERG 95
P G+ GL G PG PG +G+KGE G+ G
Sbjct: 188 PKGDMGLTGPPGQPGPQGQKGEKGQCG 214
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 314 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 373
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 374 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 417
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 418 EPGKGEMVDYNGNINEALQE 437
Score = 66.2 bits (160), Expect = 2e-11
Identities = 39/89 (43%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 20 CEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP--GPMGPPGETPCPPGNNGLPG 77
C G G PG PG G G GR G GD G GP GPPG+ PG G PG
Sbjct: 117 CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQ----PGTRGFPG 172
Query: 78 APGV------PGERGEKGEAGERGPPGLP 100
PG PG G KG+ G GPPG P
Sbjct: 173 FPGPIGLDGKPGHPGPKGDMGLTGPPGQP 201
Score = 64.3 bits (155), Expect = 9e-11
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G G PG PG+ G PG G G+ G PG PGP G G T G PG PG G++G
Sbjct: 156 IGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQKG 208
Query: 87 EKGEAGE 93
EKG+ GE
Sbjct: 209 EKGQCGE 215
Score = 64.3 bits (155), Expect = 9e-11
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G G G GLPG G DG G PG PGP+G PG P G G G PG+ G G
Sbjct: 582 GFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG-PKGERGSKGDPGMTGPTGA 640
Query: 88 KGEAGERGPPG 98
G G GPPG
Sbjct: 641 AGLPGLHGPPG 651
Score = 60.1 bits (144), Expect = 2e-09
Identities = 38/95 (40%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP---------GPMGPPGETPC------ 68
D G G G G G G G G+ G PGPP GP GP GE
Sbjct: 575 DGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGM 634
Query: 69 --PPGNNGLPGAPGVPGE---RGEKGEAGERGPPG 98
P G GLPG G PG+ RGE+G+ G RGP G
Sbjct: 635 TGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKG 669
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 249 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 304
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 305 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 336
Score = 57.8 bits (138), Expect = 9e-09
Identities = 43/127 (33%), Positives = 48/127 (37%), Gaps = 54/127 (42%)
Query: 28 GSPGIPGTPGSHGL---PGRDGRDGVKGD------------------------------- 53
G PG PG G GL PG+ G G KG+
Sbjct: 181 GKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTF 240
Query: 54 ---------PGPPGPMGPPGET--------PCPPGNNGLPGAPGV---PGERGEKGEAGE 93
GPPGP GPPG + P P G GLPG PG PG +G G GE
Sbjct: 241 QGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGE 300
Query: 94 RGPPGLP 100
RG PG+P
Sbjct: 301 RGMPGMP 307
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 347 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 406
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 407 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 466
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 467 EIGLPGPPGHDGEKGPRGKPGDM 489
Score = 52.8 bits (125), Expect = 3e-07
Identities = 36/95 (37%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG--VKGDPGPPGPMGPPG--ETPCPPGNNGLP------- 76
G G G+PG G G G G V G PGP GP GPPG P P G GL
Sbjct: 523 GETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKG 582
Query: 77 -----------GAPGVPGERGEKGEAGERGPPGLP 100
G PG G G G G GP G+P
Sbjct: 583 FQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVP 617
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP 76
G G PG G+ G G+ G G KGD G G P + PCP G +GLP
Sbjct: 645 GLHGPPGDKGNRGERGKKGSRGPKGDKGDQG--APGLDAPCPLGEDGLP 691
Score = 37.4 bits (85), Expect = 0.012
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 59 PMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPG 98
P PG CPP G G PG+PG++G G G G PG
Sbjct: 111 PKTSPG-CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPG 149
>gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens]
Length = 700
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/96 (51%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 442 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 498
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGPPG 98
PPG +G PG PG PGE+GEKGE G+ G PG
Sbjct: 499 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPG 534
Score = 76.6 bits (187), Expect = 2e-14
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGET--PCPPGNNGLPGAPGVPGER 85
G PG+PG G+ G+PGR G+ G +G PG PGP+G G+ P P G+ GL G PG PG +
Sbjct: 128 GRPGLPGDKGAIGMPGRVGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQ 187
Query: 86 GEKGEAGERG 95
G+KGE G+ G
Sbjct: 188 GQKGEKGQCG 197
Score = 72.0 bits (175), Expect = 4e-13
Identities = 37/79 (46%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC-----PPGNNGLPGAPGVP 82
G PG PGTPG G+PG G G +G G PG GP G PPG+ G G G
Sbjct: 605 GRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKK 664
Query: 83 GERGEKGEAGERGPPGLPA 101
G RG KG+ G++G PGL A
Sbjct: 665 GSRGPKGDKGDQGAPGLDA 683
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 256 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 315
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 316 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 353
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 446 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 501
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 502 KDGPPGVKGENGHPGSPGEKGEK 524
Score = 68.9 bits (167), Expect = 4e-12
Identities = 40/90 (44%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD-----------PGPPGPMGPPGETPCPPGNNGLP 76
G PG PG G G G+ G G KG+ PG PGP GPPG PPG G+P
Sbjct: 513 GHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG----PPGLQGVP 568
Query: 77 GAPG------VPGERGEKGEAGERGPPGLP 100
G G GE+G +GE G+RGP GLP
Sbjct: 569 GPKGEAGLDGAKGEKGFQGEKGDRGPLGLP 598
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G G+PG G GL G G G +G+ G GP+G PG + PG G PG GVPG
Sbjct: 563 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPA 622
Query: 86 GEKGEAGERGPPGL 99
G KGE G +G PG+
Sbjct: 623 GPKGERGSKGDPGM 636
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 276 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 335
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 336 GEKGAEGSPGLPGL 349
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 316 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 375
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 376 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 419
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 420 EPGKGEMVDYNGNINEALQE 439
Score = 64.3 bits (155), Expect = 9e-11
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G PG G PG+ G PG G G+ G PG PGP G G T G PG PG G++G
Sbjct: 139 IGMPGRVGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQKG 191
Query: 87 EKGEAGE 93
EKG+ GE
Sbjct: 192 EKGQCGE 198
Score = 64.3 bits (155), Expect = 9e-11
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G G G GLPG G DG G PG PGP+G PG P G G G PG+ G G
Sbjct: 584 GFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG-PKGERGSKGDPGMTGPTGA 642
Query: 88 KGEAGERGPPG 98
G G GPPG
Sbjct: 643 AGLPGLHGPPG 653
Score = 60.1 bits (144), Expect = 2e-09
Identities = 38/95 (40%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP---------GPMGPPGETPC------ 68
D G G G G G G G G+ G PGPP GP GP GE
Sbjct: 577 DGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGM 636
Query: 69 --PPGNNGLPGAPGVPGE---RGEKGEAGERGPPG 98
P G GLPG G PG+ RGE+G+ G RGP G
Sbjct: 637 TGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKG 671
Score = 59.7 bits (143), Expect = 2e-09
Identities = 31/66 (46%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 43 GRDGRDGVKGDPGPPGPMGPPGE-----TPCPPGNNGLPGAPGV---PGERGEKGEAGER 94
G + ++G PGPPGP GP G P P G GLPG PG PG +G G GER
Sbjct: 244 GEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGER 303
Query: 95 GPPGLP 100
G PG+P
Sbjct: 304 GMPGMP 309
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/99 (38%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 29 SPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGERG 86
SPG P G GR G G KG G PG +G PG P PG GL G PG PG +G
Sbjct: 114 SPGCNCPPAFQGPTGRPGLPGDKGAIGMPGRVGQPGTRGFPGFPGPIGLDGKPGHPGPKG 173
Query: 87 EKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGAL 125
+ G G G PG E+ Q + R + AL
Sbjct: 174 DMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAAL 212
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 251 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 306
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 307 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 338
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 349 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 408
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 409 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 468
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 469 EIGLPGPPGHDGEKGPRGKPGDM 491
Score = 52.8 bits (125), Expect = 3e-07
Identities = 36/95 (37%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG--VKGDPGPPGPMGPPG--ETPCPPGNNGLP------- 76
G G G+PG G G G G V G PGP GP GPPG P P G GL
Sbjct: 525 GETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKG 584
Query: 77 -----------GAPGVPGERGEKGEAGERGPPGLP 100
G PG G G G G GP G+P
Sbjct: 585 FQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVP 619
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP 76
G G PG G+ G G+ G G KGD G G P + PCP G +GLP
Sbjct: 647 GLHGPPGDKGNRGERGKKGSRGPKGDKGDQG--APGLDAPCPLGEDGLP 693
Score = 38.1 bits (87), Expect = 0.007
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 41 LPGRDGRDGVKGDPG---PPGPMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPP 97
L R R+ K PG PP GP G GLPG G G G G+ G RG P
Sbjct: 102 LHSRRRREAPKTSPGCNCPPAFQGPTGRP-------GLPGDKGAIGMPGRVGQPGTRGFP 154
Query: 98 GLP 100
G P
Sbjct: 155 GFP 157
>gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens]
Length = 705
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/96 (51%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 447 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 503
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGPPG 98
PPG +G PG PG PGE+GEKGE G+ G PG
Sbjct: 504 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPG 539
Score = 72.0 bits (175), Expect = 4e-13
Identities = 37/79 (46%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC-----PPGNNGLPGAPGVP 82
G PG PGTPG G+PG G G +G G PG GP G PPG+ G G G
Sbjct: 610 GRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKK 669
Query: 83 GERGEKGEAGERGPPGLPA 101
G RG KG+ G++G PGL A
Sbjct: 670 GSRGPKGDKGDQGAPGLDA 688
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 261 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 320
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 321 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 358
Score = 70.1 bits (170), Expect = 2e-12
Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 7/75 (9%)
Query: 28 GSPGIPGTPGSHGLP-----GRDGRDGVKGDPGPPGPMGPPGET--PCPPGNNGLPGAPG 80
G PG+PG+PG GL G G+ G +G PG PGP+G G+ P P G+ GL G PG
Sbjct: 128 GRPGLPGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPG 187
Query: 81 VPGERGEKGEAGERG 95
PG +G+KGE G+ G
Sbjct: 188 QPGPQGQKGEKGQCG 202
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 451 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 506
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 507 KDGPPGVKGENGHPGSPGEKGEK 529
Score = 68.9 bits (167), Expect = 4e-12
Identities = 40/90 (44%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD-----------PGPPGPMGPPGETPCPPGNNGLP 76
G PG PG G G G+ G G KG+ PG PGP GPPG PPG G+P
Sbjct: 518 GHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG----PPGLQGVP 573
Query: 77 GAPG------VPGERGEKGEAGERGPPGLP 100
G G GE+G +GE G+RGP GLP
Sbjct: 574 GPKGEAGLDGAKGEKGFQGEKGDRGPLGLP 603
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G G+PG G GL G G G +G+ G GP+G PG + PG G PG GVPG
Sbjct: 568 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPA 627
Query: 86 GEKGEAGERGPPGL 99
G KGE G +G PG+
Sbjct: 628 GPKGERGSKGDPGM 641
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 281 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 340
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 341 GEKGAEGSPGLPGL 354
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 321 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 380
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 381 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 424
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 425 EPGKGEMVDYNGNINEALQE 444
Score = 64.3 bits (155), Expect = 9e-11
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G G PG PG+ G PG G G+ G PG PGP G G T G PG PG G++G
Sbjct: 144 IGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQKG 196
Query: 87 EKGEAGE 93
EKG+ GE
Sbjct: 197 EKGQCGE 203
Score = 64.3 bits (155), Expect = 9e-11
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G G G GLPG G DG G PG PGP+G PG P G G G PG+ G G
Sbjct: 589 GFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG-PKGERGSKGDPGMTGPTGA 647
Query: 88 KGEAGERGPPG 98
G G GPPG
Sbjct: 648 AGLPGLHGPPG 658
Score = 60.1 bits (144), Expect = 2e-09
Identities = 38/95 (40%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP---------GPMGPPGETPC------ 68
D G G G G G G G G+ G PGPP GP GP GE
Sbjct: 582 DGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGM 641
Query: 69 --PPGNNGLPGAPGVPGE---RGEKGEAGERGPPG 98
P G GLPG G PG+ RGE+G+ G RGP G
Sbjct: 642 TGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKG 676
Score = 59.7 bits (143), Expect = 2e-09
Identities = 36/80 (45%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 29 SPGIPGTPGSHGLPGRDGRDGVKGDPGPP--GPMGPPGETPCPPGNNGLPGAP------G 80
SPG P G GR G G GD G GP GPPG+ PG G PG P G
Sbjct: 114 SPGCNCPPAFQGPTGRPGLPGSPGDAGLSIIGPRGPPGQ----PGTRGFPGFPGPIGLDG 169
Query: 81 VPGERGEKGEAGERGPPGLP 100
PG G KG+ G GPPG P
Sbjct: 170 KPGHPGPKGDMGLTGPPGQP 189
Score = 59.7 bits (143), Expect = 2e-09
Identities = 31/66 (46%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 43 GRDGRDGVKGDPGPPGPMGPPGE-----TPCPPGNNGLPGAPGV---PGERGEKGEAGER 94
G + ++G PGPPGP GP G P P G GLPG PG PG +G G GER
Sbjct: 249 GEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGER 308
Query: 95 GPPGLP 100
G PG+P
Sbjct: 309 GMPGMP 314
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 256 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 311
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 312 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 343
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 354 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 413
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 414 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 473
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 474 EIGLPGPPGHDGEKGPRGKPGDM 496
Score = 52.8 bits (125), Expect = 3e-07
Identities = 36/95 (37%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG--VKGDPGPPGPMGPPG--ETPCPPGNNGLP------- 76
G G G+PG G G G G V G PGP GP GPPG P P G GL
Sbjct: 530 GETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKG 589
Query: 77 -----------GAPGVPGERGEKGEAGERGPPGLP 100
G PG G G G G GP G+P
Sbjct: 590 FQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVP 624
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP 76
G G PG G+ G G+ G G KGD G G P + PCP G +GLP
Sbjct: 652 GLHGPPGDKGNRGERGKKGSRGPKGDKGDQG--APGLDAPCPLGEDGLP 698
Score = 40.0 bits (92), Expect = 0.002
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 59 PMGPPGETPCPPGNNGLPGAPGVPGERGEKGEA--GERGPPGLP 100
P PG CPP G G PG+PG G+ G + G RGPPG P
Sbjct: 111 PKTSPG-CNCPPAFQGPTGRPGLPGSPGDAGLSIIGPRGPPGQP 153
>gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens]
Length = 717
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/96 (51%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 459 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 515
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGPPG 98
PPG +G PG PG PGE+GEKGE G+ G PG
Sbjct: 516 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPG 551
Score = 72.0 bits (175), Expect = 4e-13
Identities = 37/79 (46%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC-----PPGNNGLPGAPGVP 82
G PG PGTPG G+PG G G +G G PG GP G PPG+ G G G
Sbjct: 622 GRPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKK 681
Query: 83 GERGEKGEAGERGPPGLPA 101
G RG KG+ G++G PGL A
Sbjct: 682 GSRGPKGDKGDQGAPGLDA 700
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 273 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 332
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 333 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 370
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 463 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 518
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 519 KDGPPGVKGENGHPGSPGEKGEK 541
Score = 68.9 bits (167), Expect = 4e-12
Identities = 40/90 (44%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD-----------PGPPGPMGPPGETPCPPGNNGLP 76
G PG PG G G G+ G G KG+ PG PGP GPPG PPG G+P
Sbjct: 530 GHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG----PPGLQGVP 585
Query: 77 GAPG------VPGERGEKGEAGERGPPGLP 100
G G GE+G +GE G+RGP GLP
Sbjct: 586 GPKGEAGLDGAKGEKGFQGEKGDRGPLGLP 615
Score = 68.9 bits (167), Expect = 4e-12
Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCP--PGNNGLPGAPGVPGER 85
G G+PG G GL G G G +G+ G GP+G PG + PG G PG GVPG
Sbjct: 580 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPA 639
Query: 86 GEKGEAGERGPPGL 99
G KGE G +G PG+
Sbjct: 640 GPKGERGSKGDPGM 653
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 293 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 352
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 353 GEKGAEGSPGLPGL 366
Score = 66.6 bits (161), Expect = 2e-11
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 19/87 (21%)
Query: 28 GSPGIPGTPGSHGLPGR-----------------DGRDGVKGDPGPPGPMGPPGET--PC 68
G PG+PG G+ G+PGR G+ G +G PG PGP+G G+ P
Sbjct: 128 GRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPG 187
Query: 69 PPGNNGLPGAPGVPGERGEKGEAGERG 95
P G+ GL G PG PG +G+KGE G+ G
Sbjct: 188 PKGDMGLTGPPGQPGPQGQKGEKGQCG 214
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 333 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 392
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 393 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 436
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 437 EPGKGEMVDYNGNINEALQE 456
Score = 66.2 bits (160), Expect = 2e-11
Identities = 39/89 (43%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 20 CEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP--GPMGPPGETPCPPGNNGLPG 77
C G G PG PG G G GR G GD G GP GPPG+ PG G PG
Sbjct: 117 CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQ----PGTRGFPG 172
Query: 78 AP------GVPGERGEKGEAGERGPPGLP 100
P G PG G KG+ G GPPG P
Sbjct: 173 FPGPIGLDGKPGHPGPKGDMGLTGPPGQP 201
Score = 64.3 bits (155), Expect = 9e-11
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G G PG PG+ G PG G G+ G PG PGP G G T G PG PG G++G
Sbjct: 156 IGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQKG 208
Query: 87 EKGEAGE 93
EKG+ GE
Sbjct: 209 EKGQCGE 215
Score = 64.3 bits (155), Expect = 9e-11
Identities = 34/71 (47%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G G G GLPG G DG G PG PGP+G PG P G G G PG+ G G
Sbjct: 601 GFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG-PKGERGSKGDPGMTGPTGA 659
Query: 88 KGEAGERGPPG 98
G G GPPG
Sbjct: 660 AGLPGLHGPPG 670
Score = 60.1 bits (144), Expect = 2e-09
Identities = 38/95 (40%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 24 DVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP---------GPMGPPGETPC------ 68
D G G G G G G G G+ G PGPP GP GP GE
Sbjct: 594 DGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKGDPGM 653
Query: 69 --PPGNNGLPGAPGVPGE---RGEKGEAGERGPPG 98
P G GLPG G PG+ RGE+G+ G RGP G
Sbjct: 654 TGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKG 688
Score = 59.7 bits (143), Expect = 2e-09
Identities = 31/66 (46%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 43 GRDGRDGVKGDPGPPGPMGPPGE-----TPCPPGNNGLPGAPGV---PGERGEKGEAGER 94
G + ++G PGPPGP GP G P P G GLPG PG PG +G G GER
Sbjct: 261 GEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGER 320
Query: 95 GPPGLP 100
G PG+P
Sbjct: 321 GMPGMP 326
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 268 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 323
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 324 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 355
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 366 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 425
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 426 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 485
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 486 EIGLPGPPGHDGEKGPRGKPGDM 508
Score = 52.8 bits (125), Expect = 3e-07
Identities = 36/95 (37%), Positives = 38/95 (40%), Gaps = 22/95 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG--VKGDPGPPGPMGPPG--ETPCPPGNNGLP------- 76
G G G+PG G G G G V G PGP GP GPPG P P G GL
Sbjct: 542 GETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKG 601
Query: 77 -----------GAPGVPGERGEKGEAGERGPPGLP 100
G PG G G G G GP G+P
Sbjct: 602 FQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVP 636
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP 76
G G PG G+ G G+ G G KGD G G P + PCP G +GLP
Sbjct: 664 GLHGPPGDKGNRGERGKKGSRGPKGDKGDQG--APGLDAPCPLGEDGLP 710
Score = 37.4 bits (85), Expect = 0.012
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 59 PMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPG 98
P PG CPP G G PG+PG++G G G G PG
Sbjct: 111 PKTSPG-CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPG 149
>gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens]
Length = 705
Score = 89.4 bits (220), Expect = 3e-18
Identities = 49/96 (51%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 459 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 515
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGPPG 98
PPG +G PG PG PGE+GEKGE G+ G PG
Sbjct: 516 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPG 551
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 273 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 332
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 333 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 370
Score = 70.1 bits (170), Expect = 2e-12
Identities = 36/79 (45%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC-----PPGNNGLPGAPGVP 82
G G+PGTPG G+PG G G +G G PG GP G PPG+ G G G
Sbjct: 610 GPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKK 669
Query: 83 GERGEKGEAGERGPPGLPA 101
G RG KG+ G++G PGL A
Sbjct: 670 GSRGPKGDKGDQGAPGLDA 688
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 463 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 518
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 519 KDGPPGVKGENGHPGSPGEKGEK 541
Score = 68.9 bits (167), Expect = 4e-12
Identities = 40/90 (44%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD-----------PGPPGPMGPPGETPCPPGNNGLP 76
G PG PG G G G+ G G KG+ PG PGP GPPG PPG G+P
Sbjct: 530 GHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPG----PPGLQGVP 585
Query: 77 GAPG------VPGERGEKGEAGERGPPGLP 100
G G GE+G +GE G+RGP GLP
Sbjct: 586 GPKGEAGLDGAKGEKGFQGEKGDRGPLGLP 615
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 293 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 352
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 353 GEKGAEGSPGLPGL 366
Score = 67.8 bits (164), Expect = 8e-12
Identities = 38/77 (49%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDG--VKGDPGPPGPMGPPG--ETPCPPGNNGLPGAPGVPG 83
G G G+PG G G G G V G PGP GP GPPG P P G GL GA G G
Sbjct: 542 GETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKG 601
Query: 84 ERGEKGEAGERGPPGLP 100
+GEKG+ G G PG P
Sbjct: 602 FQGEKGDRGPLGLPGTP 618
Score = 66.6 bits (161), Expect = 2e-11
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 19/87 (21%)
Query: 28 GSPGIPGTPGSHGLPGR-----------------DGRDGVKGDPGPPGPMGPPGET--PC 68
G PG+PG G+ G+PGR G+ G +G PG PGP+G G+ P
Sbjct: 128 GRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPG 187
Query: 69 PPGNNGLPGAPGVPGERGEKGEAGERG 95
P G+ GL G PG PG +G+KGE G+ G
Sbjct: 188 PKGDMGLTGPPGQPGPQGQKGEKGQCG 214
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 333 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 392
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 393 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 436
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 437 EPGKGEMVDYNGNINEALQE 456
Score = 66.2 bits (160), Expect = 2e-11
Identities = 39/89 (43%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 20 CEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPP--GPMGPPGETPCPPGNNGLPG 77
C G G PG PG G G GR G GD G GP GPPG+ PG G PG
Sbjct: 117 CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQ----PGTRGFPG 172
Query: 78 AP------GVPGERGEKGEAGERGPPGLP 100
P G PG G KG+ G GPPG P
Sbjct: 173 FPGPIGLDGKPGHPGPKGDMGLTGPPGQP 201
Score = 66.2 bits (160), Expect = 2e-11
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G+PG G GL G G G +G+ G GP+G PG PG G+PG G GERG
Sbjct: 580 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPG----TPGPIGVPGPAGPKGERGS 635
Query: 88 KGEAGERGPPG 98
KG+ G GP G
Sbjct: 636 KGDPGMTGPTG 646
Score = 64.3 bits (155), Expect = 9e-11
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERG 86
+G G PG PG+ G PG G G+ G PG PGP G G T G PG PG G++G
Sbjct: 156 IGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQKG 208
Query: 87 EKGEAGE 93
EKG+ GE
Sbjct: 209 EKGQCGE 215
Score = 59.7 bits (143), Expect = 2e-09
Identities = 31/66 (46%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 43 GRDGRDGVKGDPGPPGPMGPPGE-----TPCPPGNNGLPGAPGV---PGERGEKGEAGER 94
G + ++G PGPPGP GP G P P G GLPG PG PG +G G GER
Sbjct: 261 GEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGER 320
Query: 95 GPPGLP 100
G PG+P
Sbjct: 321 GMPGMP 326
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 268 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 323
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 324 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 355
Score = 58.2 bits (139), Expect = 7e-09
Identities = 40/101 (39%), Positives = 44/101 (43%), Gaps = 31/101 (30%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD---------------------PGPPGP------M 60
G PG+ G PG G G DG G KG PGP GP
Sbjct: 577 GPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSK 636
Query: 61 GPPGETPCPPGNNGLPGAPGVPGE---RGEKGEAGERGPPG 98
G PG T P G GLPG G PG+ RGE+G+ G RGP G
Sbjct: 637 GDPGMTG-PTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKG 676
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 366 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 425
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 426 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 485
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 486 EIGLPGPPGHDGEKGPRGKPGDM 508
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP 76
G G PG G+ G G+ G G KGD G G P + PCP G +GLP
Sbjct: 652 GLHGPPGDKGNRGERGKKGSRGPKGDKGDQG--APGLDAPCPLGEDGLP 698
Score = 37.4 bits (85), Expect = 0.012
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 59 PMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPG 98
P PG CPP G G PG+PG++G G G G PG
Sbjct: 111 PKTSPG-CNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPG 149
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 88.6 bits (218), Expect = 5e-18
Identities = 51/100 (51%), Positives = 57/100 (57%), Gaps = 11/100 (11%)
Query: 9 TLILMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPC 68
TL LM G ++ G+PGIPG G GLPG G DG KG G PG MGPPG
Sbjct: 408 TLALMGPPGLPGQIGPP--GAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG- 464
Query: 69 PPGNNGLPGA------PGVPGERGEKGEAGERGP--PGLP 100
PPG +G PG PG PGE+GEKGE G+ G PGLP
Sbjct: 465 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLP 504
Score = 70.9 bits (172), Expect = 1e-12
Identities = 42/101 (41%), Positives = 46/101 (45%), Gaps = 28/101 (27%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGD--------------------------PGPPGPMG 61
G PG G PG G PG+DG GVKG+ PGP GP G
Sbjct: 452 GKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPG 511
Query: 62 PPG--ETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGLP 100
PPG P P G GL GA G G +GEKG+ G G PG P
Sbjct: 512 PPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTP 552
Score = 70.5 bits (171), Expect = 1e-12
Identities = 42/98 (42%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPG-----------ETPCPPGNNGLP 76
G PG PG G G PG G G G PGPPGP G PG P PG +G
Sbjct: 222 GPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAK 281
Query: 77 GAPGV--------PGERGEKGEAGERGPPGLPAHLDEE 106
GAPG+ PG G KGE G G PGLP L ++
Sbjct: 282 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 319
Score = 69.3 bits (168), Expect = 3e-12
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 27 VGSPGIPGT---PGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPG 83
+G PG+PG PG+ G+PG+ G G+ G PG G GP G+ PG+ G PG G PG
Sbjct: 412 MGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGK----PGDMGPPGPQGPPG 467
Query: 84 ERGEKGEAGERGPPGLPAHLDEE 106
+ G G GE G PG P E+
Sbjct: 468 KDGPPGVKGENGHPGSPGEKGEK 490
Score = 68.6 bits (166), Expect = 5e-12
Identities = 33/66 (50%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G PG+PG PG+ G PG G G+ G PG PGP G G T G PG PG G++GE
Sbjct: 128 GRPGLPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLT-------GPPGQPGPQGQKGE 180
Query: 88 KGEAGE 93
KG+ GE
Sbjct: 181 KGQCGE 186
Score = 68.2 bits (165), Expect = 6e-12
Identities = 35/74 (47%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-GNNGLPGAPGVPGER 85
+G PG+PG PG G PG G G KG+ G PG G G P G+ G PG+PG +
Sbjct: 242 MGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTK 301
Query: 86 GEKGEAGERGPPGL 99
GEKG G G PGL
Sbjct: 302 GEKGAEGSPGLPGL 315
Score = 67.0 bits (162), Expect = 1e-11
Identities = 40/97 (41%), Positives = 46/97 (47%), Gaps = 27/97 (27%)
Query: 27 VGSPGIPGTPGSHGLPGRDGRDGVKGDPGP-----------------PGPMGPPGETPCP 69
+G PG G PG G PG G +G G PG PGP GPPG P
Sbjct: 457 MGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPG----P 512
Query: 70 PGNNGLP------GAPGVPGERGEKGEAGERGPPGLP 100
PG G+P G G GE+G +GE G+RGP GLP
Sbjct: 513 PGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLP 549
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/140 (34%), Positives = 59/140 (42%), Gaps = 30/140 (21%)
Query: 28 GSPGIP--GTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPP-------GNNGLPGA 78
G+PGI G G G+PG G G +G PG PG +G GE G G PG
Sbjct: 282 GAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL 341
Query: 79 PGVPGERGEKGEAGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKV 138
PG PG +GE G G+ GPPG P E RGA QG G K
Sbjct: 342 PGPPGPKGEAGVDGQVGPPGQPGDKGE----------------RGAAGEQGPDGPKGSKG 385
Query: 139 FSSNGQSITF-----DAIQE 153
G+ + + +A+QE
Sbjct: 386 EPGKGEMVDYNGNINEALQE 405
Score = 66.2 bits (160), Expect = 2e-11
Identities = 33/71 (46%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGE 87
G G+PG G GL G G G +G+ G GP+G PG PG G+PG G GERG
Sbjct: 514 GLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPG----TPGPIGVPGPAGPKGERGS 569
Query: 88 KGEAGERGPPG 98
KG+ G GP G
Sbjct: 570 KGDPGMTGPTG 580
Score = 65.5 bits (158), Expect = 4e-11
Identities = 34/70 (48%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 26 CVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGER 85
C P G G GLPG+ G G G PGP G G PG P P G+ GL G PG PG +
Sbjct: 117 CNCPPAFQGPTGRPGLPGQPGTRGFPGFPGPIGLDGKPGH-PGPKGDMGLTGPPGQPGPQ 175
Query: 86 GEKGEAGERG 95
G+KGE G+ G
Sbjct: 176 GQKGEKGQCG 185
Score = 63.5 bits (153), Expect = 2e-10
Identities = 39/93 (41%), Positives = 43/93 (46%), Gaps = 20/93 (21%)
Query: 28 GSPGIPGTPGSHGLPGRDGRDGVKG---------------DPGP---PGPMGPPGE--TP 67
G PG+ G PG G G DG G KG PGP PGP GP GE +
Sbjct: 511 GPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSK 570
Query: 68 CPPGNNGLPGAPGVPGERGEKGEAGERGPPGLP 100
PG G GA G+PG G G+ G RG GLP
Sbjct: 571 GDPGMTGPTGAAGLPGLHGPPGDKGNRGEDGLP 603
Score = 60.8 bits (146), Expect = 1e-09
Identities = 32/68 (47%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 41 LPGRDGRDGVKGDPGPPGPMGPPGE-----TPCPPGNNGLPGAPGV---PGERGEKGEAG 92
L G + ++G PGPPGP GP G P P G GLPG PG PG +G G G
Sbjct: 208 LKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKG 267
Query: 93 ERGPPGLP 100
ERG PG+P
Sbjct: 268 ERGMPGMP 275
Score = 58.5 bits (140), Expect = 5e-09
Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 21/92 (22%)
Query: 32 IPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLP------------GAP 79
I G PG G PG G G G PGP GP G PG PPG G P G P
Sbjct: 217 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPG----PPGPKGDPGIQGYHGRKGERGMP 272
Query: 80 GVPGERGEKGE-----AGERGPPGLPAHLDEE 106
G+PG+ G KG AG +G PG+P E+
Sbjct: 273 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEK 304
Score = 57.4 bits (137), Expect = 1e-08
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 51/143 (35%)
Query: 12 LMAASGAACEVKDVCVGSPGIPGTPGSHGLPGRDGRDGVKGDPGPPGPMGPPGE------ 65
L+ G + + G G PG PG G PG G GV G GPPG G GE
Sbjct: 315 LLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGE 374
Query: 66 ---------------------------------------TPCPPGNNGLPGAPGVPGERG 86
P PG G PGAPG+PG++G
Sbjct: 375 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKG 434
Query: 87 E------KGEAGERGPPGLPAHL 103
E G GE+GP G P +
Sbjct: 435 EIGLPGPPGHDGEKGPRGKPGDM 457
Score = 52.0 bits (123), Expect = 5e-07
Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 35 TPGSHGLPGRDGRDGVKGDPGPPGPMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGER 94
+PG + P G G G PG PG G PG PG GL G PG PG +G+ G G
Sbjct: 114 SPGCNCPPAFQGPTGRPGLPGQPGTRGFPGF----PGPIGLDGKPGHPGPKGDMGLTGPP 169
Query: 95 GPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEK 137
G PG E+ Q + R + AL I GE+
Sbjct: 170 GQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQ 212
Score = 37.7 bits (86), Expect = 0.009
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 59 PMGPPGETPCPPGNNGLPGAPGVPGERGEKGEAGERGPPGL---PAH 102
P PG CPP G G PG+PG+ G +G G GP GL P H
Sbjct: 111 PKTSPG-CNCPPAFQGPTGRPGLPGQPGTRGFPGFPGPIGLDGKPGH 156
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.139 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,599,245
Number of Sequences: 37866
Number of extensions: 1056286
Number of successful extensions: 44968
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 559
Number of HSP's that attempted gapping in prelim test: 5205
Number of HSP's gapped (non-prelim): 7426
length of query: 248
length of database: 18,247,518
effective HSP length: 100
effective length of query: 148
effective length of database: 14,460,918
effective search space: 2140215864
effective search space used: 2140215864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.