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Search of human proteins with 148886668
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148886668 zinc finger CCCH-type containing 12C [Homo
sapiens]
(883 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148886668 zinc finger CCCH-type containing 12C [Homo sapiens] 1815 0.0
gi|148746187 zinc finger CCCH-type containing 12B [Homo sapiens] 812 0.0
gi|156151383 zinc finger CCCH-type containing 12A [Homo sapiens] 419 e-117
gi|148762945 zinc finger CCCH-type containing 12D [Homo sapiens] 363 e-100
gi|54792090 hypothetical protein LOC23351 [Homo sapiens] 186 6e-47
gi|48928019 Nedd4 binding protein 1 [Homo sapiens] 176 1e-43
gi|126723547 hypothetical protein LOC57523 [Homo sapiens] 154 3e-37
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 45 4e-04
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 45 4e-04
gi|221139926 NHS-like 1 [Homo sapiens] 44 9e-04
gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens] 39 0.016
gi|153251865 hypothetical protein LOC84226 [Homo sapiens] 39 0.021
gi|169173146 PREDICTED: hypothetical protein [Homo sapiens] 37 0.062
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 37 0.11
gi|7662486 ring finger protein 44 [Homo sapiens] 36 0.14
gi|187761317 tet oncogene family member 2 isoform a [Homo sapiens] 36 0.18
gi|27262622 neuron navigator 1 [Homo sapiens] 36 0.18
gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens] 35 0.24
gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens] 35 0.24
gi|23199971 T-cell activation Rho GTPase-activating protein isof... 35 0.24
gi|21314774 T-cell activation Rho GTPase-activating protein isof... 35 0.24
gi|223972627 3-oxoacyl-ACP synthase, mitochondrial isoform 2 pre... 35 0.24
gi|119943102 CREB binding protein isoform b [Homo sapiens] 35 0.31
gi|119943104 CREB binding protein isoform a [Homo sapiens] 35 0.31
gi|193083129 MAP/microtubule affinity-regulating kinase 3 isofor... 35 0.31
gi|153085429 hepatitis A virus cellular receptor 1 [Homo sapiens] 35 0.40
gi|153085427 hepatitis A virus cellular receptor 1 [Homo sapiens] 35 0.40
gi|59938776 cAMP responsive element binding protein 5 isoform de... 35 0.40
gi|59938774 cAMP responsive element binding protein 5 isoform be... 35 0.40
gi|59938772 cAMP responsive element binding protein 5 isoform ga... 35 0.40
>gi|148886668 zinc finger CCCH-type containing 12C [Homo sapiens]
Length = 883
Score = 1815 bits (4700), Expect = 0.0
Identities = 883/883 (100%), Positives = 883/883 (100%)
Query: 1 MPGGGSQEYGVLCIQEYRKNSKVESSTRNNFMGLKDHLGHDLGHLYVESTDPQLSPAVPW 60
MPGGGSQEYGVLCIQEYRKNSKVESSTRNNFMGLKDHLGHDLGHLYVESTDPQLSPAVPW
Sbjct: 1 MPGGGSQEYGVLCIQEYRKNSKVESSTRNNFMGLKDHLGHDLGHLYVESTDPQLSPAVPW 60
Query: 61 STVENPSMDTVNVGKDEKEASEENASSGDSEENTNSDHESEQLGSISVEPGLITKTHRQL 120
STVENPSMDTVNVGKDEKEASEENASSGDSEENTNSDHESEQLGSISVEPGLITKTHRQL
Sbjct: 61 STVENPSMDTVNVGKDEKEASEENASSGDSEENTNSDHESEQLGSISVEPGLITKTHRQL 120
Query: 121 CRSPCLEPHILKRNEILQDFKPEESQTTSKEAKKPPDVVREYQTKLEFALKLGYSEEQVQ 180
CRSPCLEPHILKRNEILQDFKPEESQTTSKEAKKPPDVVREYQTKLEFALKLGYSEEQVQ
Sbjct: 121 CRSPCLEPHILKRNEILQDFKPEESQTTSKEAKKPPDVVREYQTKLEFALKLGYSEEQVQ 180
Query: 181 LVLNKLGTDALINDILGELVKLGNKSEADQTVSTINTITRETSSLESQRSESPMQEIVTD 240
LVLNKLGTDALINDILGELVKLGNKSEADQTVSTINTITRETSSLESQRSESPMQEIVTD
Sbjct: 181 LVLNKLGTDALINDILGELVKLGNKSEADQTVSTINTITRETSSLESQRSESPMQEIVTD 240
Query: 241 DGENLRPIVIDGSNVAMSHGNKEVFSCRGIKLAVDWFLERGHKDITVFVPAWRKEQSRPD 300
DGENLRPIVIDGSNVAMSHGNKEVFSCRGIKLAVDWFLERGHKDITVFVPAWRKEQSRPD
Sbjct: 241 DGENLRPIVIDGSNVAMSHGNKEVFSCRGIKLAVDWFLERGHKDITVFVPAWRKEQSRPD 300
Query: 301 ALITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAFESDGIIVSNDNYRDLA 360
ALITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAFESDGIIVSNDNYRDLA
Sbjct: 301 ALITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAFESDGIIVSNDNYRDLA 360
Query: 361 NEKPEWKKFIDERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPIVPEHKKQPCPYGK 420
NEKPEWKKFIDERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPIVPEHKKQPCPYGK
Sbjct: 361 NEKPEWKKFIDERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPIVPEHKKQPCPYGK 420
Query: 421 KCTYGHKCKYYHPERGSQPQRSVADELRAMSRNTAAKTANEGGLVKSNSVPCSTKADSTS 480
KCTYGHKCKYYHPERGSQPQRSVADELRAMSRNTAAKTANEGGLVKSNSVPCSTKADSTS
Sbjct: 421 KCTYGHKCKYYHPERGSQPQRSVADELRAMSRNTAAKTANEGGLVKSNSVPCSTKADSTS 480
Query: 481 DVKRGAPKRQSDPSIRTQVYQDLEEKLPTKNKLETRSVPSLVSIPATSTAKPQSTTSLSN 540
DVKRGAPKRQSDPSIRTQVYQDLEEKLPTKNKLETRSVPSLVSIPATSTAKPQSTTSLSN
Sbjct: 481 DVKRGAPKRQSDPSIRTQVYQDLEEKLPTKNKLETRSVPSLVSIPATSTAKPQSTTSLSN 540
Query: 541 GLPSGVHFPPQDQRPQGQYPSMMMATKNHGTPMPYEQYPKCDSPVDIGYYSMLNAYSNLS 600
GLPSGVHFPPQDQRPQGQYPSMMMATKNHGTPMPYEQYPKCDSPVDIGYYSMLNAYSNLS
Sbjct: 541 GLPSGVHFPPQDQRPQGQYPSMMMATKNHGTPMPYEQYPKCDSPVDIGYYSMLNAYSNLS 600
Query: 601 LSGPRSPERRFSLDTDYRISSVASDCSSEGSMSCGSSDSYVGYNDRSYVSSPDPQLEENL 660
LSGPRSPERRFSLDTDYRISSVASDCSSEGSMSCGSSDSYVGYNDRSYVSSPDPQLEENL
Sbjct: 601 LSGPRSPERRFSLDTDYRISSVASDCSSEGSMSCGSSDSYVGYNDRSYVSSPDPQLEENL 660
Query: 661 KCQHMHPHSRLNPQPFLQNFHDPLTRGQSYSHEEPKFHHKPPLPHLALHLPHSAVGARSS 720
KCQHMHPHSRLNPQPFLQNFHDPLTRGQSYSHEEPKFHHKPPLPHLALHLPHSAVGARSS
Sbjct: 661 KCQHMHPHSRLNPQPFLQNFHDPLTRGQSYSHEEPKFHHKPPLPHLALHLPHSAVGARSS 720
Query: 721 CPGDYPSPPSSAHSKAPHLGRSLVATRIDSISDSRLYDSSPSRQRKPYSRQEGLGSWERP 780
CPGDYPSPPSSAHSKAPHLGRSLVATRIDSISDSRLYDSSPSRQRKPYSRQEGLGSWERP
Sbjct: 721 CPGDYPSPPSSAHSKAPHLGRSLVATRIDSISDSRLYDSSPSRQRKPYSRQEGLGSWERP 780
Query: 781 GYGIDAYGYRQTYSLPDNSTQPCYEQFTFQSLPEQQEPAWRIPYCGMPQDPPRYQDNREK 840
GYGIDAYGYRQTYSLPDNSTQPCYEQFTFQSLPEQQEPAWRIPYCGMPQDPPRYQDNREK
Sbjct: 781 GYGIDAYGYRQTYSLPDNSTQPCYEQFTFQSLPEQQEPAWRIPYCGMPQDPPRYQDNREK 840
Query: 841 IYINLCNIFPPDLVRIVMKRNPHMTDAQQLAAAILVEKSQLGY 883
IYINLCNIFPPDLVRIVMKRNPHMTDAQQLAAAILVEKSQLGY
Sbjct: 841 IYINLCNIFPPDLVRIVMKRNPHMTDAQQLAAAILVEKSQLGY 883
>gi|148746187 zinc finger CCCH-type containing 12B [Homo sapiens]
Length = 825
Score = 812 bits (2098), Expect = 0.0
Identities = 446/839 (53%), Positives = 567/839 (67%), Gaps = 55/839 (6%)
Query: 72 NVGKDEKEASEENAS---SGDSEENTNSDHESEQLG------SISVEPG--------LIT 114
+ K+EK+ +++++ + DSEE +S+ + EQ+ S S +P + +
Sbjct: 4 SASKEEKQQPKQDSTEQGNADSEEWMSSESDPEQISLKSSDNSKSCQPRDGQLKKKEMHS 63
Query: 115 KTHRQLCRSPCLEPHILKRNEILQDFKPEESQTTSKEAKKPPDVVREYQTKLEFALKLGY 174
K HRQLCRSPCL+ ++ ILQD K D+ +EYQ K+EFALKLGY
Sbjct: 64 KPHRQLCRSPCLDRPSFSQSSILQDGKL--------------DLEKEYQAKMEFALKLGY 109
Query: 175 SEEQVQLVLNKLGTDALINDILGELVKLGNKSEADQTVSTINTITRETSSLESQRSESPM 234
+EEQ+Q VLNKLG ++LIND+L ELV+LGNK +++ ++ + R SS E E +
Sbjct: 110 AEEQIQSVLNKLGPESLINDVLAELVRLGNKGDSEGQINLSLLVPRGPSSREIASPELSL 169
Query: 235 QEIVTDDGENLRPIVIDGSNVAMSHGNKEVFSCRGIKLAVDWFLERGHKDITVFVPAWRK 294
++ + D+ +NLRP+VIDGSNVAMSHGNKE FSCRGI+LAVDWFL++GHKDITVFVPAWRK
Sbjct: 170 EDEI-DNSDNLRPVVIDGSNVAMSHGNKEEFSCRGIQLAVDWFLDKGHKDITVFVPAWRK 228
Query: 295 EQSRPDALITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAFESDGIIVSND 354
EQSRPDA ITDQ+ILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAF+SDGIIVSND
Sbjct: 229 EQSRPDAPITDQDILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAFDSDGIIVSND 288
Query: 355 NYRDLANEKPEWKKFIDERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPIVPEHKKQ 414
NYRDL EKPEWKKFI+ERLLMYSFVNDKFMPPDDPLGRHGPSL+NFLRK+PIVPEHKKQ
Sbjct: 289 NYRDLQVEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPIVPEHKKQ 348
Query: 415 PCPYGKKCTYGHKCKYYHPERGSQPQRSVADELRAMSRNTAAKTANEGGLVKSNSVPCST 474
PCPYGKKCTYGHKCKYYHPER +QPQRSVADELR ++ + KT +EG L K + S
Sbjct: 349 PCPYGKKCTYGHKCKYYHPERANQPQRSVADELRISAKLSTVKTMSEGTLAKCGTGMSSA 408
Query: 475 KADSTSDVKRGAPKRQSDPSIRTQVYQDLEEKLPTKNKLETRSVPSLVSIPATSTAKPQ- 533
K + TS+VKR APKRQSDPSIR+ V + EE L K E SVPSLV+ + T P
Sbjct: 409 KGEITSEVKRVAPKRQSDPSIRS-VAMEPEEWLSIARKPEASSVPSLVTALSVPTIPPPK 467
Query: 534 -------STTSLSNGLPSGVHFPPQ----DQRPQGQYPSMMMATKNHGTPMPY-EQYPKC 581
+T S S+ +P HFP Q + QYP +++ T +HGTP+ Y EQYPK
Sbjct: 468 SHAVGALNTRSASSPVPGSSHFPHQKASLEHMASMQYPPILV-TNSHGTPISYAEQYPKF 526
Query: 582 DSPVDIGYYSMLNAYSNLSLSGPRSPERRFSLDTDYRISSVASDCSSEGSMSCGSSDSYV 641
+S D GYYSML +S L+++ + E + + D + + + S+ +S +D+Y
Sbjct: 527 ESMGDHGYYSMLGDFSKLNINSMHNRE-YYMAEVDRGVYARNPNLCSDSRVSHTRNDNYS 585
Query: 642 GYNDRSYVSSPDPQLEENLKCQHMHPHSRLNPQPFLQNFHDPLTRGQSYSHEEPK-FHHK 700
YN+ Y++ D E NLK +RL QPF +H+ LTR QSY E+ K HK
Sbjct: 586 SYNN-VYLAVADTHPEGNLKLHRSASQNRL--QPFPHGYHEALTRVQSYGPEDSKQGPHK 642
Query: 701 PPLPHLALHLPHSAVGARSSCPGDYPSPPSSAHSKAPHLGRSLVATRIDSISDSRLYDSS 760
+PHLALH H + G RSSCP DYP PP+ P GR+LV TR+DSISDSRLY+S+
Sbjct: 643 QSVPHLALHAQHPSTGTRSSCPADYPMPPNIHPGATPQPGRALVMTRMDSISDSRLYESN 702
Query: 761 PSRQRKPYSRQEGLGSWERPGYGIDAYGYRQTYSLPDNSTQPCYEQFTFQSLPEQQEPAW 820
P RQR+P +E SW+ D+YGY +Y L ++ QPCYE +S+PE+ E W
Sbjct: 703 PVRQRRPPLCREQHASWDPLPCTTDSYGY-HSYPLSNSLMQPCYEPVMVRSVPEKMEQLW 761
Query: 821 RIPYCGMPQDPPRYQ--DNREKIYINLCNIFPPDLVRIVMKRNPHMTDAQQLAAAILVE 877
R P+ GM D + +++ + Y NLCNIFP ++V VM++NPH DAQQLAA I+ +
Sbjct: 762 RNPWVGMCNDSREHMIPEHQYQTYKNLCNIFPSNIVLAVMEKNPHTADAQQLAALIVAK 820
>gi|156151383 zinc finger CCCH-type containing 12A [Homo sapiens]
Length = 599
Score = 419 bits (1076), Expect = e-117
Identities = 233/444 (52%), Positives = 286/444 (64%), Gaps = 35/444 (7%)
Query: 124 PCLEPHILKRNEILQDFKPEESQTTSKEAKKPPDVVRE------YQTKLEFALKLGYSEE 177
PC E +L+ + + ++ E+S + + ++ E Q K++F KLGYS
Sbjct: 4 PCGEKPVLEASPTMSLWEFEDSHSRQGTPRPGQELAAEEASALELQMKVDFFRKLGYSST 63
Query: 178 QVQLVLNKLGTDALINDILGELVKLGNKSEADQTVST-----INTITRETSSLESQRSES 232
++ VL KLG A N +LGELVK G +E ++ S + + R + ++ E
Sbjct: 64 EIHSVLQKLGVQADTNTVLGELVKHGTATERERQTSPDPCPQLPLVPRGGGTPKAPNLEP 123
Query: 233 PMQEIVTDDGENLRPIVIDGSNVAMSHGNKEVFSCRGIKLAVDWFLERGHKDITVFVPAW 292
P+ E +G +LRP+VIDGSNVAMSHGNKEVFSCRGI LAV+WFLERGH DITVFVP+W
Sbjct: 124 PLPE-EEKEGSDLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTDITVFVPSW 182
Query: 293 RKEQSRPDALITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAFESDGIIVS 352
RKEQ RPD ITDQ ILR+LEK+KILVFTPSRRV G+RVVCYDDRFIVKLA+ESDGI+VS
Sbjct: 183 RKEQPRPDVPITDQHILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVS 242
Query: 353 NDNYRDLANEKPEWKKFIDERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPIVPEHK 412
ND YRDL E+ EWK+FI+ERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKP+ EH+
Sbjct: 243 NDTYRDLQGERQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPLTLEHR 302
Query: 413 KQPCPYGKKCTYGHKCKYYHPERGSQPQRSVADELRAMSRNTAAKTANEGGLVKSNSVPC 472
KQPCPYG+KCTYG KC+++HPER S PQRSVADELRA L+ P
Sbjct: 303 KQPCPYGRKCTYGIKCRFFHPERPSCPQRSVADELRA------------NALLSPPRAPS 350
Query: 473 STKADSTSDVKRGAPKRQSDPSIRTQVYQDLEEKLPTKNKLETRSVPSLVSIPATSTAKP 532
K + +R +P QS + L+ K KL ++ P T T P
Sbjct: 351 KDK-----NGRRPSPSSQSSSLLTESEQCSLDGK-----KLGAQASPGSRQEGLTQTYAP 400
Query: 533 QSTTSLSNGLPSGVHFPPQDQRPQ 556
S SL+ SG F P D PQ
Sbjct: 401 -SGRSLAPSGGSGSSFGPTDWLPQ 423
Score = 51.2 bits (121), Expect = 4e-06
Identities = 52/168 (30%), Positives = 67/168 (39%), Gaps = 27/168 (16%)
Query: 716 GARSSCPGDYPSPPSSAHSKAPHLGRSLVATRIDSISDSRLYDSSPSRQRKPYSRQEGLG 775
G R PG+ P PP + ++ G L AT S + R G G
Sbjct: 452 GVRGGGPGE-PGPPRAPYTGYSPYGSELPATAAFSA----------------FGRAMGAG 494
Query: 776 SWERPGY---GIDAYGYRQTYSLPDNSTQPCYEQFTFQSLPEQQEPAWRIPYCGMPQDPP 832
+ P A+ R+ +S P P Q P Q A R P+ G
Sbjct: 495 HFSVPADYPPAPPAFPPREYWSEPYPLPPPTS---VLQEPPVQSPGAGRSPW-GRAGSLA 550
Query: 833 RYQDNREKIYINLCNIFPPDLVRIVMKRNPHMTDAQQLAAAILVEKSQ 880
+ Q + +Y LC +FPP LV VM R P + D QQLAA IL KSQ
Sbjct: 551 KEQAS---VYTKLCGVFPPHLVEAVMGRFPQLLDPQQLAAEILSYKSQ 595
>gi|148762945 zinc finger CCCH-type containing 12D [Homo sapiens]
Length = 321
Score = 363 bits (932), Expect = e-100
Identities = 174/292 (59%), Positives = 217/292 (74%), Gaps = 3/292 (1%)
Query: 161 EYQTKLEFALKLGYSEEQVQLVLNKLGTDALINDILGELVKLGNKSEADQTVSTINTITR 220
E+ +K+EF KLGY E V VL KLG AL+ND+L EL++ G++ A + ++ + R
Sbjct: 2 EHPSKMEFFQKLGYDREDVLRVLGKLGEGALVNDVLQELIRTGSRPGALEHLAAPRLVPR 61
Query: 221 ETSSLESQRSESP---MQEIVTDDGENLRPIVIDGSNVAMSHGNKEVFSCRGIKLAVDWF 277
+ + P ++E +LRPIVIDGSNVAMSHGNKE FSCRGIKLAVDWF
Sbjct: 62 GSCGVPDSAQRGPGTALEEDFRTLASSLRPIVIDGSNVAMSHGNKETFSCRGIKLAVDWF 121
Query: 278 LERGHKDITVFVPAWRKEQSRPDALITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDR 337
+RGH I VFVP+WRK+ R D I +Q +L +LE++ +LV+TPSR+V G+R+VCYDDR
Sbjct: 122 RDRGHTYIKVFVPSWRKDSPRADTPIREQHVLAELERQAVLVYTPSRKVHGKRLVCYDDR 181
Query: 338 FIVKLAFESDGIIVSNDNYRDLANEKPEWKKFIDERLLMYSFVNDKFMPPDDPLGRHGPS 397
+IVK+A+E DG+IVSNDNYRDL +E PEWK FI++RLLM+SFVND+FMPPDDPLGRHGPS
Sbjct: 182 YIVKVAYEQDGVIVSNDNYRDLQSENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRHGPS 241
Query: 398 LDNFLRKKPIVPEHKKQPCPYGKKCTYGHKCKYYHPERGSQPQRSVADELRA 449
L NFL +KP PE Q CPYGKKCTYG KCK+YHPER Q +VADELRA
Sbjct: 242 LSNFLSRKPKPPEPSWQHCPYGKKCTYGIKCKFYHPERPHHAQLAVADELRA 293
>gi|54792090 hypothetical protein LOC23351 [Homo sapiens]
Length = 678
Score = 186 bits (473), Expect = 6e-47
Identities = 99/194 (51%), Positives = 127/194 (65%), Gaps = 3/194 (1%)
Query: 244 NLRPIVIDGSNVAMSHGNKEVFSCRGIKLAVDWFLERGHKDITVFVPAWRKEQSRPDALI 303
+LR IVIDGSNVAM HG + FS RGI +AV +F +RGH+DITVFVP WR + DA +
Sbjct: 436 DLRHIVIDGSNVAMVHGLQHYFSSRGIAIAVQYFWDRGHRDITVFVPQWRFSK---DAKV 492
Query: 304 TDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAFESDGIIVSNDNYRDLANEK 363
+ L+KL +L TPSR + G+R+ YDDRF+VKLA E+DGIIVSND +RDLA E
Sbjct: 493 RESHFLQKLYSLSLLSLTPSRVMDGKRISSYDDRFMVKLAEETDGIIVSNDQFRDLAEES 552
Query: 364 PEWKKFIDERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPIVPEHKKQPCPYGKKCT 423
+W I ERLL ++FV + FM PDDPLGR+GP+LD FL+K K P
Sbjct: 553 EKWMAIIRERLLPFTFVGNLFMVPDDPLGRNGPTLDEFLKKPARTQGSSKAQHPSRGFAE 612
Query: 424 YGHKCKYYHPERGS 437
+G + + E+GS
Sbjct: 613 HGKQQQGREEEKGS 626
>gi|48928019 Nedd4 binding protein 1 [Homo sapiens]
Length = 896
Score = 176 bits (445), Expect = 1e-43
Identities = 85/162 (52%), Positives = 120/162 (74%), Gaps = 3/162 (1%)
Query: 244 NLRPIVIDGSNVAMSHGNKEVFSCRGIKLAVDWFLERGHKDITVFVPAWRKEQSRPDALI 303
+L+ IVIDGSNVA++HG K+ FSCRGI +AV++F + G+++ITVFVP WR +R D +
Sbjct: 616 DLKHIVIDGSNVAITHGLKKFFSCRGIAIAVEYFWKLGNRNITVFVPQWR---TRRDPNV 672
Query: 304 TDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAFESDGIIVSNDNYRDLANEK 363
T+Q L +L++ IL TP+R V G R+ +DDRF++ LA ++ GIIV+NDN+R+ NE
Sbjct: 673 TEQHFLTQLQELGILSLTPARMVFGERIASHDDRFLLHLADKTGGIIVTNDNFREFVNES 732
Query: 364 PEWKKFIDERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKK 405
W++ I +RLL Y+FV D FM PDDPLGR GP L+ FL+K+
Sbjct: 733 VSWREIITKRLLQYTFVGDIFMVPDDPLGRSGPRLEEFLQKE 774
Score = 35.8 bits (81), Expect = 0.18
Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 12/165 (7%)
Query: 76 DEKEASEENASSGDSEENTNSDHESEQLGSISVEPGLITKTHRQLCRSPCLEPHILKRNE 135
DE+ S E ++ H +Q +V+ G I + L + + + +
Sbjct: 272 DEEALSNERICQKRRFSDSEERHTKKQFSLENVQEGEILHDAKTLAGNVIAD--LSDSSA 329
Query: 136 ILQDFKPEESQTTSKEAKKPPDVVREYQTKLEFALKLGYSEEQVQLVLNKLGTDALINDI 195
++ P+ +TT + EY + F +GYS+E V+ V+ G +
Sbjct: 330 DSENLSPDIKETTEE---------MEYNILVNFFKTMGYSQEIVEKVIKVYGPSTEPLLL 380
Query: 196 LGELVKLGNKSEADQTVSTINTITRETSSLESQRSESPMQEIVTD 240
L E+ K + + D+ S T+ ET+ +++ S E+ TD
Sbjct: 381 LEEIEKENKRFQEDREFSA-GTVYPETNKTKNKGVYSSTNELTTD 424
>gi|126723547 hypothetical protein LOC57523 [Homo sapiens]
Length = 1898
Score = 154 bits (390), Expect = 3e-37
Identities = 78/162 (48%), Positives = 109/162 (67%), Gaps = 5/162 (3%)
Query: 243 ENLRPIVIDGSNVAMSHGNKEVFSCRGIKLAVDWFLERGHKDITVFVPAWRKEQSRPDAL 302
+ LR +VIDGS+VAM HG + FSCRGI +AV +F RGH+++TVFVP W+ +++R
Sbjct: 790 QGLRRVVIDGSSVAMVHGLQHFFSCRGIAMAVQFFWNRGHREVTVFVPTWQLKKNR---R 846
Query: 303 ITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAFESDGIIVSNDNYRDLANE 362
+ + L KL K+L TPS+ G+++ YD RF+VKLA E+DGIIV+N+ L N
Sbjct: 847 VRESHFLTKLHSLKMLSITPSQLENGKKITTYDYRFMVKLAEETDGIIVTNEQIHILMNS 906
Query: 363 KPEWKKFIDERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRK 404
K + +RLL ++F + FM PDDPLGR GP+LD FL+K
Sbjct: 907 SK--KLMVKDRLLPFTFAGNLFMVPDDPLGRDGPTLDEFLKK 946
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 44.7 bits (104), Expect = 4e-04
Identities = 96/403 (23%), Positives = 140/403 (34%), Gaps = 54/403 (13%)
Query: 412 KKQPCPYGKKCTYGHKC-KYYHPERG----SQPQRSVADELRAMSRNTAAKTANEGGLVK 466
K +P PYG Y + P++G QP S + M+ A++A GGL
Sbjct: 389 KMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAM-GGLSY 447
Query: 467 SNSVPCSTKADSTSDVKRGAPKRQSDPSIRTQVYQDLEEKLPTKNKLETRSVPSLVSIPA 526
+ +P + + ++G + S Q Q + P + PS P
Sbjct: 448 TQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQ--PSYQQQPQ 505
Query: 527 TSTAKPQSTTSLSNGLPSGVHFPPQDQRPQGQYPSMMMATKNHGTPMPYEQYPKCDSPVD 586
+ + QS+ + PS PP Q P YPS T+ H P P+ SP
Sbjct: 506 SQPPQLQSSQPPYSQQPSQ---PPHQQSP-APYPSQQSTTQQHPQSQPPYSQPQAQSPYQ 561
Query: 587 IGYYSMLNAYSNLSLSG----PRS--------PERRFSLDTDYRISSVASDCSSEGSMSC 634
A S LS P+S ++RF + S S SS SM+
Sbjct: 562 -QQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTS 620
Query: 635 ---GSSDSYVGYNDRSYVSSPDPQLEENLKCQHMHPHSRLNPQPFLQNFHDPLTRGQSYS 691
G D + R S P L ++ M L+P T G S S
Sbjct: 621 SKGGQEDMNLSLQSR---PSSLPDLSGSIDDLPMGTEGALSP--------GVSTSGISSS 669
Query: 692 HEEPKFHHKPPL-PHLALHLPHSAVGARSSCPGDYPSPPSSAHSKAPHLGRSLV------ 744
E + P PH + HLP G R P SP S A S++ L + V
Sbjct: 670 QGEQSNPAQSPFSPHTSPHLP----GIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMP 725
Query: 745 ----ATRIDSISDSRLYDSSPSRQRKPYSRQEGLGSWERPGYG 783
+ + DSI + SS ++ R R + + P G
Sbjct: 726 PRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPG 768
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 44.7 bits (104), Expect = 4e-04
Identities = 96/403 (23%), Positives = 140/403 (34%), Gaps = 54/403 (13%)
Query: 412 KKQPCPYGKKCTYGHKC-KYYHPERG----SQPQRSVADELRAMSRNTAAKTANEGGLVK 466
K +P PYG Y + P++G QP S + M+ A++A GGL
Sbjct: 389 KMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAM-GGLSY 447
Query: 467 SNSVPCSTKADSTSDVKRGAPKRQSDPSIRTQVYQDLEEKLPTKNKLETRSVPSLVSIPA 526
+ +P + + ++G + S Q Q + P + PS P
Sbjct: 448 TQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQ--PSYQQQPQ 505
Query: 527 TSTAKPQSTTSLSNGLPSGVHFPPQDQRPQGQYPSMMMATKNHGTPMPYEQYPKCDSPVD 586
+ + QS+ + PS PP Q P YPS T+ H P P+ SP
Sbjct: 506 SQPPQLQSSQPPYSQQPSQ---PPHQQSP-APYPSQQSTTQQHPQSQPPYSQPQAQSPYQ 561
Query: 587 IGYYSMLNAYSNLSLSG----PRS--------PERRFSLDTDYRISSVASDCSSEGSMSC 634
A S LS P+S ++RF + S S SS SM+
Sbjct: 562 -QQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTS 620
Query: 635 ---GSSDSYVGYNDRSYVSSPDPQLEENLKCQHMHPHSRLNPQPFLQNFHDPLTRGQSYS 691
G D + R S P L ++ M L+P T G S S
Sbjct: 621 SKGGQEDMNLSLQSR---PSSLPDLSGSIDDLPMGTEGALSP--------GVSTSGISSS 669
Query: 692 HEEPKFHHKPPL-PHLALHLPHSAVGARSSCPGDYPSPPSSAHSKAPHLGRSLV------ 744
E + P PH + HLP G R P SP S A S++ L + V
Sbjct: 670 QGEQSNPAQSPFSPHTSPHLP----GIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMP 725
Query: 745 ----ATRIDSISDSRLYDSSPSRQRKPYSRQEGLGSWERPGYG 783
+ + DSI + SS ++ R R + + P G
Sbjct: 726 PRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPG 768
>gi|221139926 NHS-like 1 [Homo sapiens]
Length = 1606
Score = 43.5 bits (101), Expect = 9e-04
Identities = 92/379 (24%), Positives = 136/379 (35%), Gaps = 78/379 (20%)
Query: 436 GSQPQRSVADELRA--MSRNTAAKTANEGGLVKSNSVPCSTKADSTSDVKRGAPKRQSDP 493
GS P +S +L + R+ + T + G + S + P GA QSD
Sbjct: 717 GSSPSQSPCSDLEEPWLPRSRSQSTVSAGSSMTSATTPNVYSLC-------GATPSQSDT 769
Query: 494 SIRTQVYQDLEEKLPTKNKLETRSVPSLVSIPATSTAKPQSTTSLSNGLPSG---VHFPP 550
S Y D P ++ + P S S+G+P+G V
Sbjct: 770 SSVKSEYTD-----PWGYYIDYTGMQE-------DPGNPAGGCSTSSGVPTGNGPVRHVQ 817
Query: 551 QDQR------PQGQY-PSMMMATKNHGTPMPYEQY------PKCDSPVDIGYYSMLNAYS 597
+ R P G P +M K+H P Y P +PV + + ++ +
Sbjct: 818 EGSRATMPQVPGGSVKPKIMSPEKSHRVISPSSGYSSQSNTPTALTPVPV-FLKSVSPAN 876
Query: 598 NLSLSGPRSPERRFSLDTDYRIS----SVASDCSSEGSMSCGSSDSYVGY---------- 643
P+ PER+ SL + IS S++S S+EGS + D VG
Sbjct: 877 GKGKPKPKVPERKSSLISSVSISSSSTSLSSSTSTEGSGTMKKLDPAVGSPPAPPPPPVP 936
Query: 644 -------NDRSYVSSPDPQLEENLKCQHMHPHSRLNPQP---FLQNFHDPLTRGQSYSHE 693
DRS P P + + + + PHS + P P L F P
Sbjct: 937 SPPFPCPADRSPFLPPPPPVTDCSQGSPL-PHSPVFPPPPPEALIPFCSP---------- 985
Query: 694 EPKFHHKPPLPHLALHLPHSAVGARSSCPGDYPSPPSSAHSKAPHLGRSLVATRIDSISD 753
P + PP P L+ LP S V S P P PSS AP L + ++
Sbjct: 986 -PDWCLSPPRPALSPILPDSPV----SLPLPPPLLPSSEPPPAPPLDPKFMKDTRPPFTN 1040
Query: 754 SRLYDSSPSRQRKPYSRQE 772
S +SS R P +++E
Sbjct: 1041 SGQPESSRGSLRPPSTKEE 1059
>gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 632
Score = 39.3 bits (90), Expect = 0.016
Identities = 49/153 (32%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 600 SLSGPRSPERRFSLDTDYRISSVASDCSSEGSMSCGSSDSYVGYNDRSYVSSP-DPQLEE 658
SLS P+ P R SL + + S S + + GS S + R +SSP DP
Sbjct: 358 SLSSPQDPHTRGSLSSPQDPHTRGSLSSPQDPHTRGSLSSPKDPHTRGSLSSPQDPHTRG 417
Query: 659 NLKCQHMHPHSRLNPQPFLQNFHDPLTRGQSYSHEEPKFH---HKPPLPHLALHL----- 710
+L PH+R + L + DP TRG S ++P P PH L
Sbjct: 418 SLS-SPKDPHTRGS----LSSPQDPHTRGSLSSPKDPHTRGSLSSPKDPHTRRSLSCPQD 472
Query: 711 PHSAVGARSSCPGDYPSPPSSAHSKAPHLGRSL 743
PH+ G+ SS P D + S + K PH RSL
Sbjct: 473 PHTR-GSLSS-PQDPHTRGSLSSPKDPHTRRSL 503
Score = 38.1 bits (87), Expect = 0.036
Identities = 47/151 (31%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Query: 600 SLSGPRSPERRFSLDTDYRISSVASDCSSEGSMSCGSSDSYVGYNDRSYVSSP-DPQLEE 658
SLS P+ P R SL + + S S + + GS S + R +SSP DP
Sbjct: 346 SLSCPQDPHTRGSLSSPQDPHTRGSLSSPQDPHTRGSLSSPQDPHTRGSLSSPKDPHTRG 405
Query: 659 NLKCQHMHPHSRLNPQPFLQNFHDPLTRGQSYSHEEPKFH---HKPPLPHL--ALHLPHS 713
+L PH+R + L + DP TRG S ++P P PH +L P
Sbjct: 406 SLS-SPQDPHTRGS----LSSPKDPHTRGSLSSPQDPHTRGSLSSPKDPHTRGSLSSPKD 460
Query: 714 AVGARS-SCPGDYPSPPSSAHSKAPHLGRSL 743
RS SCP D + S + + PH SL
Sbjct: 461 PHTRRSLSCPQDPHTRGSLSSPQDPHTRGSL 491
Score = 37.0 bits (84), Expect = 0.081
Identities = 75/264 (28%), Positives = 105/264 (39%), Gaps = 36/264 (13%)
Query: 500 YQDLEEKLPT--KNKLETRSVPSLVSIPATSTAK--PQSTTS---LSNGLPSGVHFPPQD 552
Y LE+ P + L R +P+ VSI S + Q T +S L +G +P D
Sbjct: 220 YPRLEKVSPQCQRQTLSKRGLPTPVSILINSQIQGHQQGVTGQAVVSRPLDAG--WPWMD 277
Query: 553 QRPQGQYPSMMMATKNHGTPMPYEQYPKCD--------SPVDIGYYSMLNA----YSNLS 600
P ++ NH P EQ D SP D L++ ++ S
Sbjct: 278 GPP---LQAVFAPAPNHTLQRPSEQTCPQDLHTRGSLSSPQDPHTRGSLSSPKDPHTRGS 334
Query: 601 LSGPRSPERRFSLDTDYRISSVASDCSSEGSMSCGSSDSYVGYNDRSYVSSP-DPQLEEN 659
LS P+ P R SL + S S + + GS S + R +SSP DP +
Sbjct: 335 LSCPQDPHTRGSLSCPQDPHTRGSLSSPQDPHTRGSLSSPQDPHTRGSLSSPQDPHTRGS 394
Query: 660 LKCQHMHPHSRLNPQPFLQNFHDPLTRGQSYSHEEPKFHHKPPLPHLALHLPHSAVGARS 719
L PH+R + L + DP TRG S ++P P PH+ G+ S
Sbjct: 395 LS-SPKDPHTRGS----LSSPQDPHTRGSLSSPKDPHTRGSLSSP----QDPHTR-GSLS 444
Query: 720 SCPGDYPSPPSSAHSKAPHLGRSL 743
S P D + S + K PH RSL
Sbjct: 445 S-PKDPHTRGSLSSPKDPHTRRSL 467
>gi|153251865 hypothetical protein LOC84226 [Homo sapiens]
Length = 1984
Score = 38.9 bits (89), Expect = 0.021
Identities = 79/347 (22%), Positives = 123/347 (35%), Gaps = 31/347 (8%)
Query: 438 QPQRSVADELRAMSRNTAAKTANEGGLVKSNSVPCSTKADSTSDVKRGAPKRQSDPSIRT 497
QP R+V + + S+ + K+ S P T+ + + G+P +++
Sbjct: 1473 QPLRTVQKDSSSRSKKNFYRNETSSQESKNLSTP-GTRVQARGRILPGSPVKRTWHRHLK 1531
Query: 498 QVYQDLEEKLPTKNKLETRSVPSLVSI--PATSTAKPQSTTSLSNGLPSGVHFPPQDQRP 555
E P+ + T PS + P+ + S S + L H P Q
Sbjct: 1532 DKLTHKEHNHPSFYRERTPRGPSERTRHNPSWRNHRSPSERSQRSSLERRHHSPSQRSHC 1591
Query: 556 QGQYPSMMMATKNHGTPMPYE-----QYPKCDSPVDIGYYSM----LNAYSNLSLSGPRS 606
PS KNH +P Q C SP + +S+ L++ S S GP
Sbjct: 1592 S---PSR----KNHSSPSERSWRSPSQRNHC-SPPERSCHSLSERGLHSPSQRSHRGPSQ 1643
Query: 607 PERRFSLDTDYRISSVASD-CSSEGSMSCGSSDSYVGYNDRSYVSSPDPQLEENLKCQHM 665
+ +R S S SSE S S+ G ++RS+ S + + + H
Sbjct: 1644 RRHHSPSERSHRSPSERSHRSSSERRHRSPSQRSHRGPSERSHCSPSERRHRSPSQRSHR 1703
Query: 666 HPHSRLNPQPFLQNFHDPLTRGQSYSHEEP--KFHHKPP--LPHLALHLPHSAVGARSSC 721
P R + P ++ P R SH P + HH P H H + RS C
Sbjct: 1704 GPSERRHHSPSKRSHRSPARR----SHRSPSERSHHSPSERSHHSPSERRHHSPSERSHC 1759
Query: 722 PGDYPS--PPSSAHSKAPHLGRSLVATRIDSISDSRLYDSSPSRQRK 766
S PS ++P R + S S SPS +R+
Sbjct: 1760 SPSERSHCSPSERRHRSPSERRHHSPSEKSHHSPSERSHHSPSERRR 1806
>gi|169173146 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 37.4 bits (85), Expect = 0.062
Identities = 45/171 (26%), Positives = 68/171 (39%), Gaps = 32/171 (18%)
Query: 413 KQPCPYGKKCTYGHKCKYYHPERGSQPQRSVADELR---AMSRNTAAKTANEGGLVKSNS 469
++P P GK T Y RG P + + LR +S +A + + G ++ S S
Sbjct: 127 EKPLPNGKGST--ESSDYLRVARGPMPVHTTSKRLRMDPVLSGRSATEMSGRGSVLASLS 184
Query: 470 VPCSTKADSTSDVKRGAPKRQSD-------PSIRTQVYQDLEEKLPTKNKLE--TRSVPS 520
KA +S G +RQ+ P++R QV++ L PT + E R VP
Sbjct: 185 P--LRKASLSSSSSLGPKERQTGAAADIPRPAVRHQVHETLLVVEPTHSSPEGSCREVPQ 242
Query: 521 LVSI----------------PATSTAKPQSTTSLSNGLPSGVHFPPQDQRP 555
S PA ++ S + S GL S + F P +RP
Sbjct: 243 AASKTHGLLQAVRTQAQDKRPAVTSQPCPSAATHSLGLGSNLSFGPGAKRP 293
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 36.6 bits (83), Expect = 0.11
Identities = 78/351 (22%), Positives = 117/351 (33%), Gaps = 79/351 (22%)
Query: 437 SQPQRSVADELRAMSRNTAAKTANEGGLVKSNSVPCSTKADST---SDVKRGAPKRQSDP 493
S S +D R+ SR+ AAKT +S S + + S+ + +R S P
Sbjct: 265 SADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSP 324
Query: 494 SIRTQV----YQDLEEKLPTKNKLETRSVPSLVSIPATSTAKPQSTTSLSNGLPSGVHFP 549
T+ Y+D ++ K K TR PS P S+ P+ P
Sbjct: 325 ETATKQPSSPYEDKDKD--KKEKSATRPSPS----PERSSTGPE---------------P 363
Query: 550 PQDQRPQGQYPSMMMATKNHGTPMPYEQYPKCDSPVDIGYYSMLNAYSNLSLSGPRSPER 609
P P+ ++A ++ G+P P P PV+ A S P+SPE+
Sbjct: 364 PA--------PTPLLAERHGGSPQPLATTPLSQEPVN----PPSEASPTRDRSPPKSPEK 411
Query: 610 RFSLDTDYRISSVASDCSSEGSMSCGSSDSYVGYNDRSYVSSPDPQLEENLKCQHMHPHS 669
SS S + V + S SP P H
Sbjct: 412 -------------LPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPG-------SHR 451
Query: 670 RLNPQPFLQN-FHDPLTRGQSYSHEEPKFHHKPPLPHLALHLPHSAVGARSSCPGDYPSP 728
++ P +N H R +S+SH + + P A R P+
Sbjct: 452 EISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSP---------ATAKRGRSRSRTPTK 502
Query: 729 PSSAHSKAPHLGRSLVATRIDSISDSRLYDSSPSRQRKPYSRQEGLGSWER 779
+ S++P RS A R + S S QR+ SR W R
Sbjct: 503 RGHSRSRSPQWRRSRSAQR---------WGRSRSPQRRGRSRSPQRPGWSR 544
>gi|7662486 ring finger protein 44 [Homo sapiens]
Length = 432
Score = 36.2 bits (82), Expect = 0.14
Identities = 52/206 (25%), Positives = 73/206 (35%), Gaps = 64/206 (31%)
Query: 535 TTSLSNG--LPSGVHFP--PQDQRP------QGQY-------PSMMMATKNHGTPMPYEQ 577
TT + G LP+G H P Q P GQ+ P ++ A P+PY+
Sbjct: 112 TTVTTQGFPLPTGQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPLIQACTMQQLPVPYQA 171
Query: 578 YPKCDS-------------PVDIGYYSMLNAYSNLSLSGPRSPERRFSLDTDYRISSVAS 624
YP S P + + L + +L PR P +R D D R
Sbjct: 172 YPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQHPRMPLQRLDNDVDLR-----G 226
Query: 625 DCSSEGSMSCGSSDSYVGYNDRSYVSSPDPQLEENLKCQHMHPHSRLNPQPFLQNFHDPL 684
D S GS + + S+P P L ++ H PH L H L
Sbjct: 227 DQPSLGSFTYST-------------SAPGPALSPSVPL-HYLPHDPL---------HQEL 263
Query: 685 TRGQSYSHEEP------KFHHKPPLP 704
+ G YSH P ++ + PLP
Sbjct: 264 SFGVPYSHMMPRRLSTQRYRLQQPLP 289
>gi|187761317 tet oncogene family member 2 isoform a [Homo sapiens]
Length = 2002
Score = 35.8 bits (81), Expect = 0.18
Identities = 64/295 (21%), Positives = 103/295 (34%), Gaps = 65/295 (22%)
Query: 476 ADSTSDVKRGAPKRQSDPSIRTQVYQDLEEKLPTKNKLETRSVPSLVSIPATSTAKPQST 535
A+ S ++ + K + + S ++ Q T+N + + + L+ + + Q
Sbjct: 1476 AEKLSSLENSSNKNEKEKSAPSRTKQ-------TENASQAKQLAELLRLSGPVMQQSQQP 1528
Query: 536 TSLSNGLPSGVHFPPQDQRPQGQYP------SMMMATKNHGT------PMPYEQYPKCDS 583
L P P Q QRPQ Q P S+ + + T P P YP
Sbjct: 1529 QPLQKQPPQ----PQQQQRPQQQQPHHPQTESVNSYSASGSTNPYMRRPNPVSPYPNSSH 1584
Query: 584 PVDI-GYYSMLNAYSN--------LSLSGPRSP-ERRFSLDTDYRISSVASDCSSEGSMS 633
DI G S +N YS L+ S P +P + +T Y G++S
Sbjct: 1585 TSDIYGSTSPMNFYSTSSQAAGSYLNSSNPMNPYPGLLNQNTQY------PSYQCNGNLS 1638
Query: 634 CGSSDSYVGYNDRSYVSSPDPQLEENLKCQHMHPHSRLNPQPFLQNFHDPLTRGQSYSHE 693
+ Y+G SY SP Q + + P S+L+ P + QS++ +
Sbjct: 1639 VDNCSPYLG----SY--SPQSQPMDLYRYPSQDPLSKLSLPPIHTLYQPRFGNSQSFTSK 1692
Query: 694 -------------------EPKFHHKPPLPHLALH-LPHSAVGARSSCPGDYPSP 728
P HH LP H + +GA S P + +P
Sbjct: 1693 YLGYGNQNMQGDGFSSCTIRPNVHHVGKLPPYPTHEMDGHFMGATSRLPPNLSNP 1747
>gi|27262622 neuron navigator 1 [Homo sapiens]
Length = 1874
Score = 35.8 bits (81), Expect = 0.18
Identities = 45/179 (25%), Positives = 69/179 (38%), Gaps = 10/179 (5%)
Query: 501 QDLEEKLPTKNKLETRSVPSLVSIPATSTAKPQSTTSLSN-GLPSGVHFPPQDQRPQ-GQ 558
Q+LEE + + + ++ + A P+S +SLSN P + R Q G
Sbjct: 270 QNLEETMSSLRGSQVTHSSLEMTCYDSDDANPRSVSSLSNRSSPLSWRYGQSSPRLQAGD 329
Query: 559 YPSMMMATKNHGTPMPYEQYPKCDSPVDIGYYSMLNAYSNLSLSGPRSPERRFSLDTDY- 617
PS+ + ++ GTP Y + Y + S LS E SLD+D
Sbjct: 330 APSVGGSCRSEGTPAWYMHGERAH------YSHTMPMRSPSKLSHISRLELVESLDSDEV 383
Query: 618 -RISSVASDCSSEGSMSCGSSDSYVGYNDRSYVSSPDPQLEENLKCQHMHPHSRLNPQP 675
S SD G D G+++ S +SS +NL + + S LN P
Sbjct: 384 DLKSGYMSDSDLMGKTMTEDDDITTGWDESSSISSGLSDASDNLSSEEFNASSSLNSLP 442
>gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens]
Length = 1822
Score = 35.4 bits (80), Expect = 0.24
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 705 HLALHLPHSAVGARSSCPGDYPSPPSSAHSKAPHLGRSLVATRIDSISDSRLYDSSPSRQ 764
HL+ H+PH + S+ DY S S HS + L R S DSRL P
Sbjct: 1472 HLSPHVPHRVLSTSSTLTRDYNSLTRSEHSHSTTLPRDYSTLTSVSSHDSRLTAGVPDTP 1531
Query: 765 RKPYSRQEG----LGSWERPGYGIDAYGYRQTYSL 795
+ G SW+ P GY Y L
Sbjct: 1532 TRLVFSALGPTSLRVSWQEPRCERPLQGYSVEYQL 1566
>gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens]
Length = 1752
Score = 35.4 bits (80), Expect = 0.24
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 705 HLALHLPHSAVGARSSCPGDYPSPPSSAHSKAPHLGRSLVATRIDSISDSRLYDSSPSRQ 764
HL+ H+PH + S+ DY S S HS + L R S DSRL P
Sbjct: 1402 HLSPHVPHRVLSTSSTLTRDYNSLTRSEHSHSTTLPRDYSTLTSVSSHDSRLTAGVPDTP 1461
Query: 765 RKPYSRQEG----LGSWERPGYGIDAYGYRQTYSL 795
+ G SW+ P GY Y L
Sbjct: 1462 TRLVFSALGPTSLRVSWQEPRCERPLQGYSVEYQL 1496
>gi|23199971 T-cell activation Rho GTPase-activating protein isoform
a [Homo sapiens]
Length = 553
Score = 35.4 bits (80), Expect = 0.24
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 84 NASSGDSEENTNSDH-------ESEQLGSISVEPGLITKTHRQLCRSPCLEPHILKRNEI 136
+A SG S++ T DH ES+ G I E G +TH Q R CL PH L +++
Sbjct: 347 SAGSGKSQDFTR-DHVPRGVRKESQLAGRIVQENGC--ETHNQTARGFCLRPHALSVDDV 403
Query: 137 LQ--DFKPEESQTTSKEAKKPP 156
Q D++ S + +EA + P
Sbjct: 404 FQGADWERPGSPPSYEEAMQGP 425
>gi|21314774 T-cell activation Rho GTPase-activating protein isoform
b [Homo sapiens]
Length = 731
Score = 35.4 bits (80), Expect = 0.24
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 84 NASSGDSEENTNSDH-------ESEQLGSISVEPGLITKTHRQLCRSPCLEPHILKRNEI 136
+A SG S++ T DH ES+ G I E G +TH Q R CL PH L +++
Sbjct: 525 SAGSGKSQDFTR-DHVPRGVRKESQLAGRIVQENGC--ETHNQTARGFCLRPHALSVDDV 581
Query: 137 LQ--DFKPEESQTTSKEAKKPP 156
Q D++ S + +EA + P
Sbjct: 582 FQGADWERPGSPPSYEEAMQGP 603
>gi|223972627 3-oxoacyl-ACP synthase, mitochondrial isoform 2
precursor [Homo sapiens]
Length = 376
Score = 35.4 bits (80), Expect = 0.24
Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 46/201 (22%)
Query: 469 SVPCSTKADSTSDVKRGAPKRQSDPSIRTQVYQDLEEKLPTKNKLETRSVPSLVSIPATS 528
S+PCS A V RG+ + Q + E+ +K+ +++ S P++++I A
Sbjct: 83 SIPCSVAAY----VPRGSDEGQFN-----------EQNFVSKSDIKSMSSPTIMAIGAAE 127
Query: 529 TAK------PQSTTS-LSNGLPSGVHFPPQDQRPQGQYPSMMMATKNHGTPMPYEQYPKC 581
A PQS ++ G+ G+ P + + ++ TK + P+ PK
Sbjct: 128 LAMKDSGWHPQSEADQVATGVAIGMGMIPLEVVSE---TALNFQTKGYNKVSPFF-VPKI 183
Query: 582 DSPVDIGYYSMLNAYSNLSLSGPRSPERRFSLDTDYRISSVASDCSSEGSMSCGSSDSYV 641
+ G S+ L GP +V++ C++ G+ + G S ++
Sbjct: 184 LVNMAAGQVSI-----RYKLKGPNH--------------AVSTACTT-GAHAVGDSFRFI 223
Query: 642 GYNDRSYVSSPDPQLEENLKC 662
+ D ++++PDP+ E L+C
Sbjct: 224 AHGDAGHITAPDPEGEGALRC 244
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 35.0 bits (79), Expect = 0.31
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 12/160 (7%)
Query: 491 SDPSIRTQVYQDLEEKLPTKNKLETRSVPSLVSIP---------ATSTAKPQSTTSLSNG 541
S P+I+ + Q + ++ K ++ + P+ +S A+ Q TSLSN
Sbjct: 2245 STPNIQQALQQRILQQQQMKQQIGSPGQPNPMSPQQHMLSGQPQASHLPGQQIATSLSNQ 2304
Query: 542 LPSGVHFPPQDQRPQGQYPSMMMATKNHGTPMPYEQYPKCDSPVDIGYYSMLNAYSNLSL 601
+ S P Q RPQ Q P + + P P+ P+ SP +M ++ L
Sbjct: 2305 VRSPA--PVQSPRPQSQPPHSSPSPRIQPQPSPHHVSPQTGSPHPGLAVTMASSIDQGHL 2362
Query: 602 SGPRSPERRFSLDTDYRISSVASDCSSEGSMSCGSSDSYV 641
P L+T R S+++S+ S G + + + +V
Sbjct: 2363 GNPEQSAMLPQLNTPSR-SALSSELSLVGDTTGDTLEKFV 2401
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 35.0 bits (79), Expect = 0.31
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 12/160 (7%)
Query: 491 SDPSIRTQVYQDLEEKLPTKNKLETRSVPSLVSIP---------ATSTAKPQSTTSLSNG 541
S P+I+ + Q + ++ K ++ + P+ +S A+ Q TSLSN
Sbjct: 2283 STPNIQQALQQRILQQQQMKQQIGSPGQPNPMSPQQHMLSGQPQASHLPGQQIATSLSNQ 2342
Query: 542 LPSGVHFPPQDQRPQGQYPSMMMATKNHGTPMPYEQYPKCDSPVDIGYYSMLNAYSNLSL 601
+ S P Q RPQ Q P + + P P+ P+ SP +M ++ L
Sbjct: 2343 VRSPA--PVQSPRPQSQPPHSSPSPRIQPQPSPHHVSPQTGSPHPGLAVTMASSIDQGHL 2400
Query: 602 SGPRSPERRFSLDTDYRISSVASDCSSEGSMSCGSSDSYV 641
P L+T R S+++S+ S G + + + +V
Sbjct: 2401 GNPEQSAMLPQLNTPSR-SALSSELSLVGDTTGDTLEKFV 2439
>gi|193083129 MAP/microtubule affinity-regulating kinase 3 isoform d
[Homo sapiens]
Length = 713
Score = 35.0 bits (79), Expect = 0.31
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 131 LKRNEILQDFKPEESQTTSKEAKKPPDVVREY----QTKLEFALKLGYSEEQVQLVLNKL 186
+KR + Q K +E + P V E Q +++ + +GYS+E++Q L+K+
Sbjct: 293 IKRGTLEQIMKDRWINAGHEEDELKPFVEPELDISDQKRIDIMVGMGYSQEEIQESLSKM 352
Query: 187 GTDALINDILGELVKLGNKSEADQTVSTINTITRETSSLESQRS 230
D +I + LG KS + S +N T ++ + QRS
Sbjct: 353 KYD----EITATYLLLGRKSSEVRPSSDLNNSTGQSPHHKVQRS 392
>gi|153085429 hepatitis A virus cellular receptor 1 [Homo sapiens]
Length = 364
Score = 34.7 bits (78), Expect = 0.40
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 467 SNSVPCSTKADSTSDVKRGAPKRQSDPSIRTQVYQDLEEKLPTKNKLETRSVPSLVSIPA 526
S +VP +T T+ P S P+ T L T T SVP+ SIP
Sbjct: 147 STTVPTTTTVPMTTVPTTTVPTTMSIPTTTTV--------LTTMTVSTTTSVPTTTSIPT 198
Query: 527 TSTAKPQSTTSLSNGLPSGVHFPPQDQRPQGQYPSMMMATKNHGTPM 573
T++ TT++S +P + P Q+ P PS + H T +
Sbjct: 199 TTSV--PVTTTVSTFVPP-MPLPRQNHEPVATSPSSPQPAETHPTTL 242
Score = 32.0 bits (71), Expect = 2.6
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 515 TRSVPSLVSIPATSTAKPQSTTSLSNGLPSGVHFPPQDQRP-----QGQYPSMMMATKNH 569
T +VP+ +SIP T+T T S + +P+ P P P M + +NH
Sbjct: 163 TTTVPTTMSIPTTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNH 222
Query: 570 -------GTPMPYEQYP 579
+P P E +P
Sbjct: 223 EPVATSPSSPQPAETHP 239
>gi|153085427 hepatitis A virus cellular receptor 1 [Homo sapiens]
Length = 364
Score = 34.7 bits (78), Expect = 0.40
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 467 SNSVPCSTKADSTSDVKRGAPKRQSDPSIRTQVYQDLEEKLPTKNKLETRSVPSLVSIPA 526
S +VP +T T+ P S P+ T L T T SVP+ SIP
Sbjct: 147 STTVPTTTTVPMTTVPTTTVPTTMSIPTTTTV--------LTTMTVSTTTSVPTTTSIPT 198
Query: 527 TSTAKPQSTTSLSNGLPSGVHFPPQDQRPQGQYPSMMMATKNHGTPM 573
T++ TT++S +P + P Q+ P PS + H T +
Sbjct: 199 TTSV--PVTTTVSTFVPP-MPLPRQNHEPVATSPSSPQPAETHPTTL 242
Score = 32.0 bits (71), Expect = 2.6
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 515 TRSVPSLVSIPATSTAKPQSTTSLSNGLPSGVHFPPQDQRP-----QGQYPSMMMATKNH 569
T +VP+ +SIP T+T T S + +P+ P P P M + +NH
Sbjct: 163 TTTVPTTMSIPTTTTVLTTMTVSTTTSVPTTTSIPTTTSVPVTTTVSTFVPPMPLPRQNH 222
Query: 570 -------GTPMPYEQYP 579
+P P E +P
Sbjct: 223 EPVATSPSSPQPAETHP 239
>gi|59938776 cAMP responsive element binding protein 5 isoform delta
[Homo sapiens]
Length = 369
Score = 34.7 bits (78), Expect = 0.40
Identities = 28/106 (26%), Positives = 37/106 (34%), Gaps = 17/106 (16%)
Query: 663 QHMHPHSRLNPQPFLQNFHDPLTRGQSYSHEEPKFHHKPPLPHLALHLPHSAVGARSSCP 722
QH HP +PQP Q H P S+ H P H P P L H+ A+ S
Sbjct: 154 QHQHPAHHPHPQPHHQQNH-PHHHSHSHLHAHPAHHQTSPHPPL-----HTGNQAQVSPA 207
Query: 723 GDYPSPPSSAHSKAPHLGRSLVATRIDSISDSRLYDSSPSRQRKPY 768
P + P GR R+ D P +R+ +
Sbjct: 208 TQQMQPTQTIQPPQPTGGRR-----------RRVVDEDPDERRRKF 242
>gi|59938774 cAMP responsive element binding protein 5 isoform beta
[Homo sapiens]
Length = 501
Score = 34.7 bits (78), Expect = 0.40
Identities = 28/106 (26%), Positives = 37/106 (34%), Gaps = 17/106 (16%)
Query: 663 QHMHPHSRLNPQPFLQNFHDPLTRGQSYSHEEPKFHHKPPLPHLALHLPHSAVGARSSCP 722
QH HP +PQP Q H P S+ H P H P P L H+ A+ S
Sbjct: 286 QHQHPAHHPHPQPHHQQNH-PHHHSHSHLHAHPAHHQTSPHPPL-----HTGNQAQVSPA 339
Query: 723 GDYPSPPSSAHSKAPHLGRSLVATRIDSISDSRLYDSSPSRQRKPY 768
P + P GR R+ D P +R+ +
Sbjct: 340 TQQMQPTQTIQPPQPTGGRR-----------RRVVDEDPDERRRKF 374
>gi|59938772 cAMP responsive element binding protein 5 isoform gamma
[Homo sapiens]
Length = 475
Score = 34.7 bits (78), Expect = 0.40
Identities = 28/106 (26%), Positives = 37/106 (34%), Gaps = 17/106 (16%)
Query: 663 QHMHPHSRLNPQPFLQNFHDPLTRGQSYSHEEPKFHHKPPLPHLALHLPHSAVGARSSCP 722
QH HP +PQP Q H P S+ H P H P P L H+ A+ S
Sbjct: 260 QHQHPAHHPHPQPHHQQNH-PHHHSHSHLHAHPAHHQTSPHPPL-----HTGNQAQVSPA 313
Query: 723 GDYPSPPSSAHSKAPHLGRSLVATRIDSISDSRLYDSSPSRQRKPY 768
P + P GR R+ D P +R+ +
Sbjct: 314 TQQMQPTQTIQPPQPTGGRR-----------RRVVDEDPDERRRKF 348
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,622,418
Number of Sequences: 37866
Number of extensions: 2010100
Number of successful extensions: 6029
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 111
Number of HSP's that attempted gapping in prelim test: 5860
Number of HSP's gapped (non-prelim): 268
length of query: 883
length of database: 18,247,518
effective HSP length: 111
effective length of query: 772
effective length of database: 14,044,392
effective search space: 10842270624
effective search space used: 10842270624
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.