Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM90A20 Sequence: fasta or formatted (464aa) NCBI GI: 169173146
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {464aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         45           3
 C cysteine            2.2         10           1
 D aspartate           3.0         14           1
 E glutamate           6.0         28           2
 F phenylalanine       1.7          8           1
 G glycine             6.7         31           2
 H histidine           3.0         14           2
 I isoleucine          0.9          4           1
 K lysine              6.0         28           2
 L leucine             8.6         40           2
 M methionine          1.9          9           2
 N asparagine          1.9          9           1
 P proline            12.9         60           3
 Q glutamine           5.4         25           2
 R arginine            8.6         40           2
 S serine             10.6         49           5
 T threonine           4.5         21           2
 V valine              5.0         23           2
 W tryptophan          0.9          4           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
FAM90A20              0.989   PREDICTED: hypothetical protein 
FAM90A14              0.956   PREDICTED: hypothetical protein 
FAM90A15              0.956   PREDICTED: hypothetical protein LOC389630 
FAM90A13              0.952   PREDICTED: hypothetical protein 
FAM90A3               0.950   PREDICTED: hypothetical protein 
FAM90A5               0.949   PREDICTED: hypothetical protein 
FAM90A9               0.945   PREDICTED: hypothetical protein 
FAM90A7               0.940   hypothetical protein LOC441317 
FAM90A8               0.940   PREDICTED: hypothetical protein 
FAM90A12              0.938   PREDICTED: hypothetical protein 
FAM90A10              0.938   PREDICTED: hypothetical protein LOC441328 
FAM90A19              0.938   PREDICTED: hypothetical protein 
FAM90A18              0.938   PREDICTED: hypothetical protein LOC441326 
LOC100287045          0.908   PREDICTED: hypothetical protein XP_002342469 isofor...
LOC100287045          0.908   PREDICTED: hypothetical protein XP_002342468 isofor...
FAM90A1               0.893   hypothetical protein LOC55138 
LOC646508             0.216   PREDICTED: hypothetical LOC646508 
LOC646508             0.216   PREDICTED: hypothetical LOC646508 
LOC646508             0.160   PREDICTED: hypothetical LOC646508 
FLJ22184              0.026   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.026   PREDICTED: hypothetical protein FLJ22184 
PCLO                  0.024   piccolo isoform 2 
PCLO                  0.024   piccolo isoform 1 
HIVEP3                0.024   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.024   human immunodeficiency virus type I enhancer bindin...
FLJ22184              0.023   PREDICTED: hypothetical protein LOC80164 
SRRM2                 0.022   splicing coactivator subunit SRm300 
REXO1                 0.021   transcription elongation factor B polypeptide 3 bin...
SFI1                  0.021   spindle assembly associated Sfi1 homolog isoform a [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press