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Search of human proteins with 148806920
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148806920 BEN domain containing 6 [Homo sapiens]
(279 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148806920 BEN domain containing 6 [Homo sapiens] 550 e-157
gi|67010025 Sp4 transcription factor [Homo sapiens] 37 0.015
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 37 0.025
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 36 0.033
gi|63999048 syntaxin binding protein 4 [Homo sapiens] 35 0.095
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 35 0.095
gi|59853352 myosin VIIA and Rab interacting protein [Homo sapiens] 34 0.16
gi|33188445 microfilament and actin filament cross-linker protei... 34 0.16
gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens] 34 0.16
gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens] 34 0.16
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 33 0.21
gi|122937341 hypothetical protein LOC388960 [Homo sapiens] 33 0.21
gi|223633941 hypothetical protein LOC389730 [Homo sapiens] 33 0.28
gi|193083172 nuclear assembly factor 1 homolog isoform b [Homo s... 32 0.47
gi|193083157 nuclear assembly factor 1 homolog isoform a [Homo s... 32 0.47
gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens] 32 0.62
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 32 0.62
gi|187828564 BEN domain containing 5 [Homo sapiens] 32 0.62
gi|91206406 hypothetical protein LOC642265 [Homo sapiens] 32 0.80
gi|228008410 BEN domain containing 4 isoform b [Homo sapiens] 32 0.80
gi|148762950 BEN domain containing 4 isoform a [Homo sapiens] 32 0.80
gi|51243032 oxysterol-binding protein-like protein 8 isoform b [... 32 0.80
gi|18079218 oxysterol-binding protein-like protein 8 isoform a [... 32 0.80
gi|154689866 hypothetical protein LOC9778 [Homo sapiens] 32 0.80
gi|154689751 hypothetical protein LOC9778 [Homo sapiens] 32 0.80
gi|194097365 FtsJ homolog 3 [Homo sapiens] 32 0.80
gi|40538736 RAN binding protein 10 [Homo sapiens] 32 0.80
gi|146231958 hypothetical protein LOC647060 [Homo sapiens] 32 0.80
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 0.80
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 32 0.80
>gi|148806920 BEN domain containing 6 [Homo sapiens]
Length = 279
Score = 550 bits (1418), Expect = e-157
Identities = 279/279 (100%), Positives = 279/279 (100%)
Query: 1 MQKIVQTDEITNTQAFRKGKRKRTETMDSENANSDMDKGQRDPYSGNAFLPGESSSEDEE 60
MQKIVQTDEITNTQAFRKGKRKRTETMDSENANSDMDKGQRDPYSGNAFLPGESSSEDEE
Sbjct: 1 MQKIVQTDEITNTQAFRKGKRKRTETMDSENANSDMDKGQRDPYSGNAFLPGESSSEDEE 60
Query: 61 PLAELSKEELCAKIKSLKEKLTNTRKENSRLRQSLVMLQVLPQAVTQFEELVGMAEALLK 120
PLAELSKEELCAKIKSLKEKLTNTRKENSRLRQSLVMLQVLPQAVTQFEELVGMAEALLK
Sbjct: 61 PLAELSKEELCAKIKSLKEKLTNTRKENSRLRQSLVMLQVLPQAVTQFEELVGMAEALLK 120
Query: 121 GGGTMSTSASTLWRATNNSSPDSFASTCSNSNSNSSSPVSLKPEEEHQTDEKQFQIEKWQ 180
GGGTMSTSASTLWRATNNSSPDSFASTCSNSNSNSSSPVSLKPEEEHQTDEKQFQIEKWQ
Sbjct: 121 GGGTMSTSASTLWRATNNSSPDSFASTCSNSNSNSSSPVSLKPEEEHQTDEKQFQIEKWQ 180
Query: 181 IARCNKSKPQKFINDLMQVLYTNEYMATHSLTGAKSSTSRDKAVKPAMNQNEVQEIIGVT 240
IARCNKSKPQKFINDLMQVLYTNEYMATHSLTGAKSSTSRDKAVKPAMNQNEVQEIIGVT
Sbjct: 181 IARCNKSKPQKFINDLMQVLYTNEYMATHSLTGAKSSTSRDKAVKPAMNQNEVQEIIGVT 240
Query: 241 KQLFPNTDDVSIRRMIGQKLNNCTKKPNLSKNLNSQDIK 279
KQLFPNTDDVSIRRMIGQKLNNCTKKPNLSKNLNSQDIK
Sbjct: 241 KQLFPNTDDVSIRRMIGQKLNNCTKKPNLSKNLNSQDIK 279
>gi|67010025 Sp4 transcription factor [Homo sapiens]
Length = 784
Score = 37.4 bits (85), Expect = 0.015
Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 13/160 (8%)
Query: 20 KRKRTETMDSENANSDMDKGQRDPYSGNAFLPGESSSEDEEPLAELSKEELCAKIKSLKE 79
++K E + A + G+ N P S S+D +P C+KI
Sbjct: 4 QKKEEEEEAAAAAAMATEGGKTSEPENNNKKPKTSGSQDSQPSPLALLAATCSKI----- 58
Query: 80 KLTNTRKENSRLRQSLVML---QVLPQAVTQFEELVGMAEALLKGGGTMSTSASTLWRAT 136
T EN Q +++ Q L Q Q ++L + L + S +
Sbjct: 59 ---GTPGENQATGQQQIIIDPSQGLVQLQNQPQQLELVTTQLAGNAWQLVASTPPASKEN 115
Query: 137 NNSSPDSFASTCSNSNSNSSSPVSLKPEEEHQTDEKQFQI 176
N S P S +S+ S+SN+ S+SP K + + + QFQ+
Sbjct: 116 NVSQPASSSSSSSSSNNGSASPT--KTKSGNSSTPGQFQV 153
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 36.6 bits (83), Expect = 0.025
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 11/159 (6%)
Query: 118 LLKGGGTMSTSASTLWRATNNSSPDSFASTCSNSNSNSSSPVSLKPEEEHQTDEKQFQIE 177
LLK GG + S T ++++SS S +S+ S+S+S+SSS S +
Sbjct: 135 LLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFS 194
Query: 178 K-WQIARCNKSKPQKFINDLMQVLYTNEYMATHSLTGAKSSTSRDKAVKPAMNQNEV--- 233
K ++ + +K KP K + E H+ +K S+ + K KP + V
Sbjct: 195 KPHKLMKEHKEKPSKDSREHKSAF--KEPSRDHN-KSSKESSKKPKENKPLKEEKIVPKM 251
Query: 234 --QEIIGVTKQLFPNTDDVSIRRMIGQKLNNCTKKPNLS 270
+E ++K+ P+++ ++I GQ +K+P +S
Sbjct: 252 AFKEPKPMSKEPKPDSNLLTITS--GQDKKAPSKRPPIS 288
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 36.2 bits (82), Expect = 0.033
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 44 YSGNAFLPGE--SSSEDEEPLAELSKEELCAKIKSLKEKLTNTRKENSRLRQSLVMLQVL 101
Y+ + GE S E + +A+ L ++++++EK T T EN +LRQ L+ +++
Sbjct: 423 YAQTGEIDGELLRSLEQDLKVAKDVSVRLHHELENVEEKRTTTEDENEKLRQQLIEVEIA 482
Query: 102 PQAVTQFEELVGMAEALLKGGGT 124
QA+ EL M E LK G+
Sbjct: 483 KQALQ--NELEKMKELSLKRRGS 503
>gi|63999048 syntaxin binding protein 4 [Homo sapiens]
Length = 553
Score = 34.7 bits (78), Expect = 0.095
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 50 LPGESSSEDEEPLAELSKEELCAKIKSLKEKLTNTRKENSRLRQSLVMLQVLPQAVTQ-- 107
LP +SS DE + +++ ++ +LKEKL + K+ +L + L ++ +AV +
Sbjct: 287 LPCDSSEADEMERLKCERDDALKEVNTLKEKLLESDKQRKQLTEELQNVKQEAKAVVEET 346
Query: 108 --FEELVGMAEALLKGGGTMSTSASTLWRATNNSSPDSFASTCSNSNSNSSSPVSLK 162
+ +AEA + M + R + A S+ N S LK
Sbjct: 347 RALRSRIHLAEAAQRQAHGMEMDYEEVIRLLEAKITELKAQLADYSDQNKESVQDLK 403
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 34.7 bits (78), Expect = 0.095
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 2 QKIVQTDEITNTQAFRKGKRKRTETMDSENANSDMDKGQRDPYSGNAFLPGESSSE-DEE 60
Q E + ++ +K K+ + ET ++ S + K ++ Y + L ESSSE D E
Sbjct: 143 QSSTHESESESKESVKKKKKSKDETEKEKDVRS-LSKKRKKSYPDDKPLSSESSSESDYE 201
Query: 61 PLAELSKEELCAKIKSLKEKLTNTRKENSR 90
+ K+ C + + KEK+ +K+ +
Sbjct: 202 EDVQAKKKRRCEEREQAKEKVKKKKKKQHK 231
>gi|59853352 myosin VIIA and Rab interacting protein [Homo sapiens]
Length = 859
Score = 33.9 bits (76), Expect = 0.16
Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 23/143 (16%)
Query: 149 SNSNSNSSSPVSLKPEEEHQTDEKQFQIEKWQIARCNKSKPQK----------------F 192
S S+SS P E H TD + +W+ AR +P K
Sbjct: 504 SRETSDSSEP----EEAPHTTDRRA---RRWRRARLGSEEPSKEPSSPSAQLRDLDTHQV 556
Query: 193 INDLMQVLYTNEYMATHSLTGAKSSTSRDKAVKPAMNQNEVQEIIGVTKQLFPNTDDVSI 252
+DL + +NE +LT R++ + AM +E + G ++ P T+ +
Sbjct: 557 SDDLSETDISNEARDPQTLTDTTEEKRRNRLYELAMKMSEKETSSGEDQESEPKTESENQ 616
Query: 253 RRMIGQKLNNCTKKPNLSKNLNS 275
+ + + N+ + + L K ++
Sbjct: 617 KESLSSEDNSQSVQEELKKKFSA 639
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 33.9 bits (76), Expect = 0.16
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 32/197 (16%)
Query: 57 EDEEPLAELSKEELCAKIKSL-----------KEKLTNTR-KENSRLRQSLVMLQVLPQA 104
E+EE + E K+E K+K L + K T++ KE++ + ++++ QVL +
Sbjct: 1414 EEEEKVVEEEKQEHVEKVKELLGWVSTLARNTQGKATSSETKESTDIEKAILEQQVLSEE 1473
Query: 105 VTQFEELVGMAEA-----LLKGGGTMSTSASTLWRATNNSSPDSFASTCSNSNSNSSSPV 159
+T +E V A L K G +S N+ ++ C S ++
Sbjct: 1474 LTTKKEQVSEAIKTSQIFLAKHGHKLSEKEKKQISEQLNALNKAYHDLCDGS---ANQLQ 1530
Query: 160 SLKPEEEHQTDEKQFQIEKWQIARCNKSKPQKFINDLMQVLYTNEYMATHSLTGAKSSTS 219
L+ + HQT++K Q K Q + ++ L + A +L G + T+
Sbjct: 1531 QLQSQLAHQTEQKTLQ------------KQQNTCHQQLEDLCSWVGQAERALAGHQGRTT 1578
Query: 220 RDKAVKPAMNQNEVQEI 236
+ NQ++++++
Sbjct: 1579 QQDLSALQKNQSDLKDL 1595
>gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens]
Length = 1251
Score = 33.9 bits (76), Expect = 0.16
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 80 KLTNTRKENSRLRQSLVMLQVLPQAVTQFEELVGMAEALLKGGGTMSTSASTLWRATNNS 139
KL++ +EN + L+ L + + + KG + S+S S+ +++S
Sbjct: 396 KLSSDEEENEQQAAQRTALRALSDSAVVQQPNCRTSVPSSKGSSSSSSSGSS----SSSS 451
Query: 140 SPDSFASTCSNSNSNSSSPVSLKP-----EEEHQTDEKQFQIEKWQIARCNKSKPQKFIN 194
+S + + S + S+SS KP E ++Q++KW + + N KP I
Sbjct: 452 DSESSSGSDSETESSSSESEGSKPPHFSSPEAEPASSNKWQLDKW-LNKVNPHKPPILIQ 510
Query: 195 DLMQVLYTNEY 205
+ +N+Y
Sbjct: 511 NESHGSESNQY 521
>gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens]
Length = 1226
Score = 33.9 bits (76), Expect = 0.16
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 80 KLTNTRKENSRLRQSLVMLQVLPQAVTQFEELVGMAEALLKGGGTMSTSASTLWRATNNS 139
KL++ +EN + L+ L + + + KG + S+S S+ +++S
Sbjct: 371 KLSSDEEENEQQAAQRTALRALSDSAVVQQPNCRTSVPSSKGSSSSSSSGSS----SSSS 426
Query: 140 SPDSFASTCSNSNSNSSSPVSLKP-----EEEHQTDEKQFQIEKWQIARCNKSKPQKFIN 194
+S + + S + S+SS KP E ++Q++KW + + N KP I
Sbjct: 427 DSESSSGSDSETESSSSESEGSKPPHFSSPEAEPASSNKWQLDKW-LNKVNPHKPPILIQ 485
Query: 195 DLMQVLYTNEY 205
+ +N+Y
Sbjct: 486 NESHGSESNQY 496
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 33.5 bits (75), Expect = 0.21
Identities = 49/237 (20%), Positives = 96/237 (40%), Gaps = 24/237 (10%)
Query: 12 NTQAFRKGKRK-RTETMDSENANSDMDKGQRDPYSGNAFLPGESSSEDEEPLAELSKEEL 70
NT A +K + ++T D E+A+ + G++ S + LPG + E A+ KE+
Sbjct: 395 NTIAPKKASHRILSDTSDEEDASVTVGTGEKLRLSAHTILPGSKTREPSN--AKQQKEK- 451
Query: 71 CAKIKSLKEKLTNTRKENSRLRQSLVMLQVLPQAVTQFEELVGMAEALLKGGGTMSTSAS 130
K+K ++K T R+ R ++ ++ E L G + S
Sbjct: 452 -NKVKKKRKKETKGREVRFGKRSDKFCSS---ESESESSESGEDDRDSLGSSGCLKGSPL 507
Query: 131 TLWRATNNSSPDSFASTCSNSNSNSSSPVSLKPEEEHQTDE--KQFQIEKWQIARCNKSK 188
L P F+S ++S S+ S + K H TD+ K ++ + W+
Sbjct: 508 VL------KDPSLFSSLSASSTSSHGSSAAQKQNPSH-TDQHTKHWRTDNWKTISSPAWS 560
Query: 189 PQKFINDLMQVLYTNEYMATHSLTGAKSSTSRDKAVKPAMNQNEVQEIIGVTKQLFP 245
++D + T+E + S S +++KP + E ++ ++++ P
Sbjct: 561 EVSSLSDSTRTRLTSE-------SDYSSEGSSVESLKPVRKRQEHRKRASLSEKKSP 610
>gi|122937341 hypothetical protein LOC388960 [Homo sapiens]
Length = 922
Score = 33.5 bits (75), Expect = 0.21
Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 13/177 (7%)
Query: 27 MDSENANSDMDKGQRDPYSGNAFLPGESSSEDEEPLAELSKEELCAKIKSLKEKLTNTRK 86
++S + +D+ D Y F + + E P A+ +K+ K+ ++EK +
Sbjct: 435 IESSSDLADITTWVEDTYLPPIFSSLQDLDQPESPSAKKAKDTSAIKVNQVQEKSCVIKG 494
Query: 87 ENSRLR----QSLVMLQVLPQAVTQFEELVGMAE-ALLKGGGTMSTSASTLWRATNNSSP 141
+ ++R ++ +Q P+A Q + + E ++ G T+S SAS +++ P
Sbjct: 495 HSDQVRKNKHKASEPIQGAPKAKIQPKNPECLLEREVVVGSATVSNSASVNKAKHSSNKP 554
Query: 142 DSFAST-CSNSNSNSSSPV-------SLKPEEEHQTDEKQFQIEKWQIARCNKSKPQ 190
AS+ S + S+ S K EE Q+ +K EK I + K Q
Sbjct: 555 HKAASSRISKTKSHGQEKTKGNRKNSSKKSEESKQSGKKVKVEEKQTIPNMKRKKNQ 611
>gi|223633941 hypothetical protein LOC389730 [Homo sapiens]
Length = 1343
Score = 33.1 bits (74), Expect = 0.28
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 98 LQVLPQAVTQFEELVGMAEALLKGGGTMS-TSASTLWRATNNSSPDSFASTCSNSNSNSS 156
L +PQ+++ E+LV A+ GG+ S SAS+ W+ T +S C+ ++S
Sbjct: 247 LGTVPQSLSPHEDLVASVPAISGLGGSNSHVSASSRWQETARTS-------CAFNSSVQQ 299
Query: 157 SPVSLKPEEEHQTD 170
P+S P E Q +
Sbjct: 300 DPLSRHPPETCQME 313
>gi|193083172 nuclear assembly factor 1 homolog isoform b [Homo
sapiens]
Length = 389
Score = 32.3 bits (72), Expect = 0.47
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 136 TNNSSPDSFASTCSNSNSNSSSPVSLKPEEEHQTDEKQFQIEKWQIARCNKSKPQKFIND 195
T++ S S +S+ S+S+S+SSS +SL P D+ QIEK K+K + +N+
Sbjct: 124 TDSDSSSSSSSSSSSSSSSSSSCISLPPVLSDGDDD--LQIEKENKNFPLKTKDELLLNE 181
Query: 196 LMQV 199
L V
Sbjct: 182 LPSV 185
>gi|193083157 nuclear assembly factor 1 homolog isoform a [Homo
sapiens]
Length = 494
Score = 32.3 bits (72), Expect = 0.47
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 136 TNNSSPDSFASTCSNSNSNSSSPVSLKPEEEHQTDEKQFQIEKWQIARCNKSKPQKFIND 195
T++ S S +S+ S+S+S+SSS +SL P D+ QIEK K+K + +N+
Sbjct: 124 TDSDSSSSSSSSSSSSSSSSSSCISLPPVLSDGDDD--LQIEKENKNFPLKTKDELLLNE 181
Query: 196 LMQV 199
L V
Sbjct: 182 LPSV 185
>gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens]
Length = 840
Score = 32.0 bits (71), Expect = 0.62
Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 22/150 (14%)
Query: 77 LKEKLTNTRKENSRLRQSLVMLQVLPQAVTQFEELVGMAEALLKGGGTMSTSASTLWRAT 136
L+ KL N+ EN +L+ + +F ++L + S+
Sbjct: 516 LESKLENSPVENVTAASTLLSQAKIDTGENKFPGSAPQQHSILSNQTSKSSD-------- 567
Query: 137 NNSSPDSFASTCSNSNSNSSSPVSLKPEEEHQTDEKQFQIEKWQ----IARCN------- 185
N +P + + NS+ + P LK +E +TDEKQ I+ Q CN
Sbjct: 568 NRETPRNHSLPKCNSHLEITIPKDLKLKEAEKTDEKQLIIDAGQKRFGAVSCNVCGMLYT 627
Query: 186 KSKPQKFINDLMQVLYTNEYMATHSLTGAK 215
S P+ ++ +L+ N++++ G K
Sbjct: 628 ASNPE---DETQHLLFHNQFISAVKYVGWK 654
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 32.0 bits (71), Expect = 0.62
Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 3 KIVQTDEITNTQAFRKGKRKRTETMDSENANSDMDKGQRDPYSGNAFLPGESSSEDEEPL 62
+I+ E+ +K ++KR ++ S +++S D S + ES++E++
Sbjct: 170 RILSCGELIPKSKVKKEEKKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSKK 229
Query: 63 AELSKEELCAKIKSLKEKLTNTRKENSRLRQSLVMLQVLPQAVTQFEELVGMAE 116
+ + K K K+K ++K S ++ L+ PQ+ + EE+ + E
Sbjct: 230 RKKKHRKNSRKHKKEKKKRKKSKKSASSESEA-ENLEAQPQSTVRPEEIPPIPE 282
>gi|187828564 BEN domain containing 5 [Homo sapiens]
Length = 421
Score = 32.0 bits (71), Expect = 0.62
Identities = 32/183 (17%), Positives = 76/183 (41%), Gaps = 18/183 (9%)
Query: 68 EELCAKIKSLKEKLTNTRKENSRLRQSLVM----LQVLPQAVTQFEELVGMAEAL----- 118
EEL + +E++ + ++E R R+ LV L+ V++ +EL + L
Sbjct: 184 EELLRNYQQQQEEMRHLQQELERTRRQLVQQAKKLKEYGALVSEMKELRDLNRRLQDVLL 243
Query: 119 LKGGGTMSTSASTLWRATNNSSPDSFASTCSNSNSNSSSPVSLKPEEEHQTDEKQFQI-- 176
L+ G + + P+ ++ +N++S P +++ D + +
Sbjct: 244 LRLGSGPAIDLEKVKSECLEPEPELRSTFSEEANTSSYYPAPAPVMDKYILDNGKVHLGS 303
Query: 177 ------EKWQIARCNKSKPQKFINDLMQVLYTNEYMATHSLTGAKSSTSRDKAVKPAMNQ 230
EKW + + K+ +L +++ + + S+TG + +D KP ++
Sbjct: 304 GIWVDEEKWHQLQVTQGD-SKYTKNLAVMIWGTDVLKNRSVTGVATKKKKDAVPKPPLSP 362
Query: 231 NEV 233
+++
Sbjct: 363 HKL 365
>gi|91206406 hypothetical protein LOC642265 [Homo sapiens]
Length = 1347
Score = 31.6 bits (70), Expect = 0.80
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 98 LQVLPQAVTQFEELVGMAEALLKGGGTMS-TSASTLWRATNNSSPDSFASTCSNSNSNSS 156
L +PQ+++ E+LV A+ GG+ S SAS+ W+ T +S C+ ++S
Sbjct: 247 LGTVPQSLSPHEDLVASVPAISGLGGSNSHVSASSRWQETARTS-------CAFNSSVQQ 299
Query: 157 SPVSLKPEEEHQTD 170
+S P E +Q +
Sbjct: 300 DHLSRHPPETYQME 313
>gi|228008410 BEN domain containing 4 isoform b [Homo sapiens]
Length = 441
Score = 31.6 bits (70), Expect = 0.80
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 44 YSGNAFLPGESSSEDEEPLAELSKEELCAKIKSLKEKLTNTRKENSRLRQSLVMLQVLPQ 103
+ ++ LP E EDEE C + + L++++ + ++EN LR+ L + V Q
Sbjct: 304 HPSSSTLPEEEEEEDEEGY--------CPRCQELEQEVISLQQENEELRRKLESIPVPCQ 355
Query: 104 AVTQFEELV 112
V + ++V
Sbjct: 356 TVLDYLKMV 364
>gi|148762950 BEN domain containing 4 isoform a [Homo sapiens]
Length = 534
Score = 31.6 bits (70), Expect = 0.80
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 44 YSGNAFLPGESSSEDEEPLAELSKEELCAKIKSLKEKLTNTRKENSRLRQSLVMLQVLPQ 103
+ ++ LP E EDEE C + + L++++ + ++EN LR+ L + V Q
Sbjct: 304 HPSSSTLPEEEEEEDEEGY--------CPRCQELEQEVISLQQENEELRRKLESIPVPCQ 355
Query: 104 AVTQFEELV 112
V + ++V
Sbjct: 356 TVLDYLKMV 364
>gi|51243032 oxysterol-binding protein-like protein 8 isoform b
[Homo sapiens]
Length = 847
Score = 31.6 bits (70), Expect = 0.80
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 12 NTQAFRKGKRKRTETMDSENANSDMDKGQRDPYSGNAFLPGESSSEDEEPLAELSKEELC 71
++Q F +GK ++ D + + K + Y+G S +D ++L+K+E
Sbjct: 28 HSQGFERGKEDISQNKDESSLSMSKSKSESKLYNG--------SEKDSSTSSKLTKKE-- 77
Query: 72 AKIKSLKEKLTNTRKENSRLRQSLVMLQVLPQAVTQFEEL 111
SLK + N R+E R + L+ P + + L
Sbjct: 78 ----SLKVQKKNYREEKKRATKELLSTITDPSVIVMADWL 113
>gi|18079218 oxysterol-binding protein-like protein 8 isoform a
[Homo sapiens]
Length = 889
Score = 31.6 bits (70), Expect = 0.80
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 12 NTQAFRKGKRKRTETMDSENANSDMDKGQRDPYSGNAFLPGESSSEDEEPLAELSKEELC 71
++Q F +GK ++ D + + K + Y+G S +D ++L+K+E
Sbjct: 70 HSQGFERGKEDISQNKDESSLSMSKSKSESKLYNG--------SEKDSSTSSKLTKKE-- 119
Query: 72 AKIKSLKEKLTNTRKENSRLRQSLVMLQVLPQAVTQFEEL 111
SLK + N R+E R + L+ P + + L
Sbjct: 120 ----SLKVQKKNYREEKKRATKELLSTITDPSVIVMADWL 155
>gi|154689866 hypothetical protein LOC9778 [Homo sapiens]
Length = 1395
Score = 31.6 bits (70), Expect = 0.80
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 11/151 (7%)
Query: 55 SSEDEEPLAELSKEELCAKIKSLKEKLTNTRKENSRLRQSLVMLQVLPQAVTQFEELVGM 114
S+ DE E EELC+++K L+ K K + +L S L E+
Sbjct: 119 SASDESSGIETLVEELCSRLKDLQSK--QEEKIHKKLEGSPSPEAELSPPAKDQVEMYYE 176
Query: 115 AEALLKGGGTMSTSASTLWRATN--NSSPDSFASTCSNSNSNSSSPVSLKPEEEHQTDEK 172
A L T+W + + S S +ST +++++SSP E E T E+
Sbjct: 177 AFPPLSEKPVCLQEIMTVWNKSKVCSYSSSSSSSTAPPASTDTSSPKDCNSESE-VTKER 235
Query: 173 QFQI-----EKWQIARCNKSKPQKFINDLMQ 198
++ EK Q ++ K KF N ++
Sbjct: 236 SSEVPTTVHEKTQ-SKSKNEKENKFSNGTIE 265
>gi|154689751 hypothetical protein LOC9778 [Homo sapiens]
Length = 1395
Score = 31.6 bits (70), Expect = 0.80
Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 11/151 (7%)
Query: 55 SSEDEEPLAELSKEELCAKIKSLKEKLTNTRKENSRLRQSLVMLQVLPQAVTQFEELVGM 114
S+ DE E EELC+++K L+ K K + +L S L E+
Sbjct: 119 SASDESSGIETLVEELCSRLKDLQSK--QEEKIHKKLEGSPSPEAELSPPAKDQVEMYYE 176
Query: 115 AEALLKGGGTMSTSASTLWRATN--NSSPDSFASTCSNSNSNSSSPVSLKPEEEHQTDEK 172
A L T+W + + S S +ST +++++SSP E E T E+
Sbjct: 177 AFPPLSEKPVCLQEIMTVWNKSKVCSYSSSSSSSTAPPASTDTSSPKDCNSESE-VTKER 235
Query: 173 QFQI-----EKWQIARCNKSKPQKFINDLMQ 198
++ EK Q ++ K KF N ++
Sbjct: 236 SSEVPTTVHEKTQ-SKSKNEKENKFSNGTIE 265
>gi|194097365 FtsJ homolog 3 [Homo sapiens]
Length = 847
Score = 31.6 bits (70), Expect = 0.80
Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 9/157 (5%)
Query: 18 KGKRKRTETMDSENANSDMDKG-QRDPYSGNAFLPGESSSEDEEP------LAELSKEEL 70
K +++ + +D ++ + D+G + D +G P + E+EE LAE+ +E+
Sbjct: 321 KKLKEQAKALDISLSSGEEDEGDEEDSTAGTTKQPSKEEEEEEEEEQLNQTLAEMKAQEV 380
Query: 71 CAKIKSLKEKLTNTRKENSR--LRQSLVMLQVLPQAVTQFEELVGMAEALLKGGGTMSTS 128
+ K+ L RK+ R L+ L + + + T L + L T
Sbjct: 381 AELKRKKKKLLREQRKQRERVELKMDLPGVSIADEGETGMFSLSTIRGHQLLEEVTQGDM 440
Query: 129 ASTLWRATNNSSPDSFASTCSNSNSNSSSPVSLKPEE 165
++ ++ D + S + ++S L PEE
Sbjct: 441 SAADTFLSDLPRDDIYVSDVEDDGDDTSLDSDLDPEE 477
>gi|40538736 RAN binding protein 10 [Homo sapiens]
Length = 620
Score = 31.6 bits (70), Expect = 0.80
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 129 ASTLWRATNNSSPDSFASTCSNSNSNSSSPVSLKPEEEHQTDEKQFQ 175
AST + ++ P +S+ S+S+S+SSSP S+ E + TD + Q
Sbjct: 394 ASTKSKQNHSKYPAPSSSSSSSSSSSSSSPSSVNYSESNSTDSTKSQ 440
>gi|146231958 hypothetical protein LOC647060 [Homo sapiens]
Length = 1347
Score = 31.6 bits (70), Expect = 0.80
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 98 LQVLPQAVTQFEELVGMAEALLKGGGTMS-TSASTLWRATNNSSPDSFASTCSNSNSNSS 156
L +PQ+++ E+LV A+ GG+ S SAS+ W+ T +S C+ ++S
Sbjct: 247 LGTVPQSLSPHEDLVASVPAISGLGGSNSHVSASSRWQETARTS-------CAFNSSVQQ 299
Query: 157 SPVSLKPEEEHQTD 170
+S P E +Q +
Sbjct: 300 DHLSRHPPETYQME 313
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 31.6 bits (70), Expect = 0.80
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 15 AFRKGKRKRTETMDSENANSDMDKGQRDPYSGNAFLPGESSSEDEEPLAELSKEELCAKI 74
A + K +R+ + S +++S S ++ G SSS+ E + E ++
Sbjct: 2523 ALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSS---GSSSSDSEGSSLPVQPEVALKRV 2579
Query: 75 KSLKEKLTNTRKENSRLRQSLVMLQVLPQAVTQFEELVGMAEALLKGGGTMSTSASTLWR 134
S T KE R + P T + + + + S+S+S+
Sbjct: 2580 PSP----TPAPKEAVR--------EGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSS--S 2625
Query: 135 ATNNSSPDSFASTCSNSNSNSSSPVSLKP 163
++++SS S +S+ S+S+S+SSSP KP
Sbjct: 2626 SSSSSSSSSSSSSSSSSSSSSSSPSPAKP 2654
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 31.6 bits (70), Expect = 0.80
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 126 STSASTLWRATNNSSPDSFASTCSNSNSNSSSPVSLKPEEEHQTDEKQFQ 175
S S S ++++SS S AS+ S+S+++SSS S EE +DE++ Q
Sbjct: 2155 SCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEEEAQ 2204
Score = 28.1 bits (61), Expect = 8.9
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 123 GTMSTSASTLWRATNNSSPDSFASTCSNSNSNSSSPVSLKPEEEHQTDE 171
G+ S+S+S+ A+++SS +++ S+S+S+SSS S EEE Q E
Sbjct: 2162 GSSSSSSSSCSSASSSSSS---STSSSSSSSSSSSEESDSDEEEAQKRE 2207
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.121 0.327
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,835,420
Number of Sequences: 37866
Number of extensions: 413177
Number of successful extensions: 2572
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 2462
Number of HSP's gapped (non-prelim): 238
length of query: 279
length of database: 18,247,518
effective HSP length: 101
effective length of query: 178
effective length of database: 14,423,052
effective search space: 2567303256
effective search space used: 2567303256
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.