Guide to the Human Genome
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Name: BEND6 Sequence: fasta or formatted (279aa) NCBI GI: 148806920
Description:

BEN domain containing 6

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         16           1
 C cysteine            1.4          4           1
 D aspartate           4.7         13           2
 E glutamate           8.2         23           3
 F phenylalanine       2.5          7           1
 G glycine             3.9         11           3
 H histidine           0.7          2           1
 I isoleucine          3.9         11           2
 K lysine              9.7         27           2
 L leucine             7.9         22           2
 M methionine          3.6         10           1
 N asparagine          7.9         22           2
 P proline             3.9         11           1
 Q glutamine           6.8         19           1
 R arginine            4.3         12           2
 S serine             11.5         32           3
 T threonine           7.5         21           1
 V valine              3.9         11           1
 W tryptophan          0.7          2           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   BEN domain containing 6 
SP4                   0.023   Sp4 transcription factor 
MLLT3                 0.023   myeloid/lymphoid or mixed-lineage leukemia (trithor...
C6orf174              0.021   hypothetical protein LOC387104 
STXBP4                0.019   syntaxin binding protein 4 
FAM133A               0.019   hypothetical protein LOC286499 
MYRIP                 0.017   myosin VIIA and Rab interacting protein 
MACF1                 0.017   microfilament and actin filament cross-linker protei...
AFF3                  0.017   AF4/FMR2 family, member 3 isoform 2 
AFF3                  0.017   AF4/FMR2 family, member 3 isoform 1 
ANKRD11               0.015   ankyrin repeat domain 11 
C2orf78               0.015   hypothetical protein LOC388960 
FAM75A6               0.015   hypothetical protein LOC389730 
NAF1                  0.013   nuclear assembly factor 1 homolog isoform b 
NAF1                  0.013   nuclear assembly factor 1 homolog isoform a 
ESCO1                 0.013   establishment of cohesion 1 homolog 1 
PPIG                  0.013   peptidylprolyl isomerase G 
BEND5                 0.013   BEN domain containing 5 
FAM75A2               0.013   hypothetical protein LOC642265 
BEND4                 0.013   BEN domain containing 4 isoform b 
BEND4                 0.013   BEN domain containing 4 isoform a 
OSBPL8                0.013   oxysterol-binding protein-like protein 8 isoform b [...
OSBPL8                0.013   oxysterol-binding protein-like protein 8 isoform a [...
KIAA0232              0.013   hypothetical protein LOC9778 
KIAA0232              0.013   hypothetical protein LOC9778 
FTSJ3                 0.013   FtsJ homolog 3 
RANBP10               0.013   RAN binding protein 10 
FAM75A1               0.013   hypothetical protein LOC647060 
SRRM2                 0.013   splicing coactivator subunit SRm300 
CHD9                  0.013   chromodomain helicase DNA binding protein 9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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