Guide to the Human Genome
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Name: RFPL2 Sequence: fasta or formatted (317aa) NCBI GI: 148728184
Description:

ret finger protein-like 2 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {378aa} ret finger protein-like 2 isoform 2
alt prot {288aa} ret finger protein-like 2 isoform 3
alt prot {288aa} ret finger protein-like 2 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         15           2
 C cysteine            4.7         15           3
 D aspartate           5.4         17           2
 E glutamate           5.4         17           2
 F phenylalanine       5.0         16           2
 G glycine             6.0         19           2
 H histidine           1.9          6           1
 I isoleucine          3.2         10           1
 K lysine              4.4         14           2
 L leucine            11.4         36           2
 M methionine          3.2         10           1
 N asparagine          4.1         13           2
 P proline             5.4         17           2
 Q glutamine           3.5         11           1
 R arginine            8.5         27           2
 S serine              8.8         28           2
 T threonine           5.7         18           2
 V valine              7.3         23           1
 W tryptophan          0.9          3           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ret finger protein-like 2 isoform 1 
RFPL3                 0.936   ret finger protein-like 3 isoform 1 
RFPL2                 0.912   ret finger protein-like 2 isoform 2 
RFPL2                 0.905   ret finger protein-like 2 isoform 3 
RFPL2                 0.905   ret finger protein-like 2 isoform 3 
RFPL1                 0.902   ret finger protein-like 1 
RFPL3                 0.854   ret finger protein-like 3 isoform 2 
RFPL4A                0.482   ret finger protein-like 4A 
TRIM27                0.201   ret finger protein 
BTN3A3                0.199   butyrophilin, subfamily 3, member A3 isoform a 
BTN3A3                0.199   butyrophilin, subfamily 3, member A3 isoform b [Homo...
RFPL4B                0.196   ret finger protein-like 4B 
MEFV                  0.193   Mediterranean fever protein 
BTN3A1                0.193   butyrophilin, subfamily 3, member A1 isoform c [Hom...
BTN3A1                0.193   butyrophilin, subfamily 3, member A1 isoform a [Homo...
TRIML1                0.186   tripartite motif family-like 1 
TRIM21                0.185   tripartite motif protein 21 
BTN1A1                0.175   butyrophilin, subfamily 1, member A1 
BTN2A2                0.175   butyrophilin, subfamily 2, member A2 isoform b [Homo...
BTN2A2                0.175   butyrophilin, subfamily 2, member A2 isoform a 
BTN2A1                0.175   butyrophilin, subfamily 2, member A1 isoform 1 precur...
TRIM11                0.172   tripartite motif-containing 11 
TRIM39                0.170   tripartite motif-containing 39 isoform 2 
TRIM39                0.170   tripartite motif-containing 39 isoform 1 
ERMAP                 0.162   erythroblast membrane-associated protein precursor [...
ERMAP                 0.162   erythroblast membrane-associated protein precursor [...
TRIM38                0.161   tripartite motif-containing 38 
TRIM69                0.156   tripartite motif-containing 69 isoform b 
TRIM69                0.156   tripartite motif-containing 69 isoform a 
TRIM68                0.151   ring finger protein 137 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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