Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 148613866
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148613866 tudor domain containing 10 isoform a [Homo
sapiens]
(366 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148613866 tudor domain containing 10 isoform a [Homo sapiens] 740 0.0
gi|148613864 tudor domain containing 10 isoform b [Homo sapiens] 692 0.0
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 42 0.001
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 42 0.001
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 42 0.001
gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens] 41 0.001
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 40 0.003
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 40 0.004
gi|14916461 RNA binding motif protein 18 [Homo sapiens] 39 0.010
gi|51317355 RNA binding motif, single stranded interacting prote... 39 0.010
gi|51317353 RNA binding motif, single stranded interacting prote... 39 0.010
gi|51317351 RNA binding motif, single stranded interacting prote... 39 0.010
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 39 0.010
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 38 0.013
gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4... 35 0.081
gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1 ... 35 0.081
gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2... 35 0.081
gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3 ... 35 0.081
gi|189027090 cytoplasmic polyadenylation element binding protein... 35 0.11
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 35 0.11
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 35 0.14
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 35 0.14
gi|4506447 RNA binding motif, single stranded interacting protei... 35 0.14
gi|8400718 RNA binding motif, single stranded interacting protei... 35 0.14
gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens] 34 0.18
gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... 33 0.31
gi|50345881 cytoplasmic polyadenylation element binding protein ... 33 0.31
gi|109240550 paraspeckle protein 1 [Homo sapiens] 33 0.31
gi|38505161 tudor domain containing 1 [Homo sapiens] 33 0.31
gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... 33 0.31
>gi|148613866 tudor domain containing 10 isoform a [Homo sapiens]
Length = 366
Score = 740 bits (1910), Expect = 0.0
Identities = 366/366 (100%), Positives = 366/366 (100%)
Query: 1 MSWNISHPQLSDKLFGKNGVLEEQKSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPL 60
MSWNISHPQLSDKLFGKNGVLEEQKSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPL
Sbjct: 1 MSWNISHPQLSDKLFGKNGVLEEQKSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPL 60
Query: 61 DVHKIQNGCKCFAFVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPR 120
DVHKIQNGCKCFAFVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPR
Sbjct: 61 DVHKIQNGCKCFAFVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPR 120
Query: 121 APLVLEKASGEGFGKTAAIIQLAPKAPVDLCETEKLRAAFFAVPLEMRGSFLVLLLRECF 180
APLVLEKASGEGFGKTAAIIQLAPKAPVDLCETEKLRAAFFAVPLEMRGSFLVLLLRECF
Sbjct: 121 APLVLEKASGEGFGKTAAIIQLAPKAPVDLCETEKLRAAFFAVPLEMRGSFLVLLLRECF 180
Query: 181 RDLSWLALIHSVRGEAGLLVTSIVPKTPFFWAMHVTEALHQNMQALFSTLAQAEEQQPYL 240
RDLSWLALIHSVRGEAGLLVTSIVPKTPFFWAMHVTEALHQNMQALFSTLAQAEEQQPYL
Sbjct: 181 RDLSWLALIHSVRGEAGLLVTSIVPKTPFFWAMHVTEALHQNMQALFSTLAQAEEQQPYL 240
Query: 241 EGSTVMRGTRCLAEYHLGDYGHAWNRCWVLDRVDTWAVVMFIDFGQLATIPVQSLRSLDS 300
EGSTVMRGTRCLAEYHLGDYGHAWNRCWVLDRVDTWAVVMFIDFGQLATIPVQSLRSLDS
Sbjct: 241 EGSTVMRGTRCLAEYHLGDYGHAWNRCWVLDRVDTWAVVMFIDFGQLATIPVQSLRSLDS 300
Query: 301 DDFWTIPPLTQPFMLEKDILSSYEVVHRILKGKITGALNSAVTAPASNLAVVPPLLPLGC 360
DDFWTIPPLTQPFMLEKDILSSYEVVHRILKGKITGALNSAVTAPASNLAVVPPLLPLGC
Sbjct: 301 DDFWTIPPLTQPFMLEKDILSSYEVVHRILKGKITGALNSAVTAPASNLAVVPPLLPLGC 360
Query: 361 LQQAAA 366
LQQAAA
Sbjct: 361 LQQAAA 366
>gi|148613864 tudor domain containing 10 isoform b [Homo sapiens]
Length = 351
Score = 692 bits (1787), Expect = 0.0
Identities = 341/342 (99%), Positives = 342/342 (100%)
Query: 1 MSWNISHPQLSDKLFGKNGVLEEQKSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPL 60
MSWNISHPQLSDKLFGKNGVLEEQKSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPL
Sbjct: 1 MSWNISHPQLSDKLFGKNGVLEEQKSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPL 60
Query: 61 DVHKIQNGCKCFAFVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPR 120
DVHKIQNGCKCFAFVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPR
Sbjct: 61 DVHKIQNGCKCFAFVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPR 120
Query: 121 APLVLEKASGEGFGKTAAIIQLAPKAPVDLCETEKLRAAFFAVPLEMRGSFLVLLLRECF 180
APLVLEKASGEGFGKTAAIIQLAPKAPVDLCETEKLRAAFFAVPLEMRGSFLVLLLRECF
Sbjct: 121 APLVLEKASGEGFGKTAAIIQLAPKAPVDLCETEKLRAAFFAVPLEMRGSFLVLLLRECF 180
Query: 181 RDLSWLALIHSVRGEAGLLVTSIVPKTPFFWAMHVTEALHQNMQALFSTLAQAEEQQPYL 240
RDLSWLALIHSVRGEAGLLVTSIVPKTPFFWAMHVTEALHQNMQALFSTLAQAEEQQPYL
Sbjct: 181 RDLSWLALIHSVRGEAGLLVTSIVPKTPFFWAMHVTEALHQNMQALFSTLAQAEEQQPYL 240
Query: 241 EGSTVMRGTRCLAEYHLGDYGHAWNRCWVLDRVDTWAVVMFIDFGQLATIPVQSLRSLDS 300
EGSTVMRGTRCLAEYHLGDYGHAWNRCWVLDRVDTWAVVMFIDFGQLATIPVQSLRSLDS
Sbjct: 241 EGSTVMRGTRCLAEYHLGDYGHAWNRCWVLDRVDTWAVVMFIDFGQLATIPVQSLRSLDS 300
Query: 301 DDFWTIPPLTQPFMLEKDILSSYEVVHRILKGKITGALNSAV 342
DDFWTIPPLTQPFMLEKDILSSYEVVHRILKGKITGALNSA+
Sbjct: 301 DDFWTIPPLTQPFMLEKDILSSYEVVHRILKGKITGALNSAL 342
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 41.6 bits (96), Expect = 0.001
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 20 VLEEQKSPGFKKRET-EVYVGNLPLDISKEEILYLLKDFNPLDVHKI---QNGCKCFAFV 75
++ Q+ P +K V++ NL I + + F + K+ +NG K +AFV
Sbjct: 84 IMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFV 143
Query: 76 DLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDM 115
+ + AI+++NG L + RK+FV K +R ++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Score = 37.4 bits (85), Expect = 0.021
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 22 EEQKSPGFKKRE-TEVYVGNLPLDISKEEILYLLKDFNP---LDVHKIQNG-CKCFAFVD 76
E + G K +E T VY+ N ++ E + L F + V + NG K F FV
Sbjct: 178 EREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 237
Query: 77 LGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPRAPLVLEKASGEGFGKT 136
+ A++E+NGK + +FV +++ +R ++ ++ E+ E +
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRK------FEQLKQERISRY 291
Query: 137 AAIIQLAPKAPVDLCETEKLRAAF 160
+ L K D + EKLR F
Sbjct: 292 QG-VNLYIKNLDDTIDDEKLRKEF 314
Score = 35.8 bits (81), Expect = 0.062
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 36 VYVGNLPLDISKEEILYLLKDFNPLDVHKIQ---NGCKCFAFVDLGSMQKVTLAIQELNG 92
+Y+ NL I E++ F + K+ K F FV S ++ T A+ E+NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 93 KLFHKRKLFVNTSKRPPKRTPDMIQQ 118
++ + L+V ++R +R + Q
Sbjct: 356 RIVGSKPLYVALAQRKEERKAHLTNQ 381
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 41.6 bits (96), Expect = 0.001
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 20 VLEEQKSPGFKKRET-EVYVGNLPLDISKEEILYLLKDFNPLDVHKI---QNGCKCFAFV 75
++ Q+ P +K V++ NL I + + F + K+ +NG K +AFV
Sbjct: 84 IMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFV 143
Query: 76 DLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDM 115
+ + AI+++NG L + RK+FV K +R ++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Score = 37.4 bits (85), Expect = 0.021
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 22 EEQKSPGFKKRE-TEVYVGNLPLDISKEEILYLLKDFNP---LDVHKIQNG-CKCFAFVD 76
E + G K +E T VY+ N ++ E + L F + V + NG K F FV
Sbjct: 178 EREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 237
Query: 77 LGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPRAPLVLEKASGEGFGKT 136
+ A++E+NGK + +FV +++ +R ++ ++ E+ E +
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRK------FEQLKQERISRY 291
Query: 137 AAIIQLAPKAPVDLCETEKLRAAF 160
+ L K D + EKLR F
Sbjct: 292 QG-VNLYIKNLDDTIDDEKLRKEF 314
Score = 35.8 bits (81), Expect = 0.062
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 36 VYVGNLPLDISKEEILYLLKDFNPLDVHKIQ---NGCKCFAFVDLGSMQKVTLAIQELNG 92
+Y+ NL I E++ F + K+ K F FV S ++ T A+ E+NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 93 KLFHKRKLFVNTSKRPPKRTPDMIQQ 118
++ + L+V ++R +R + Q
Sbjct: 356 RIVGSKPLYVALAQRKEERKAHLTNQ 381
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 41.6 bits (96), Expect = 0.001
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 20 VLEEQKSPGFKKRET-EVYVGNLPLDISKEEILYLLKDFNPLDVHKI---QNGCKCFAFV 75
++ Q+ P +K V++ NL I + + F + K+ +NG K +AFV
Sbjct: 84 IMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFV 143
Query: 76 DLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDM 115
+ + AI+++NG L + RK+FV K +R ++
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Score = 37.4 bits (85), Expect = 0.021
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 22 EEQKSPGFKKRE-TEVYVGNLPLDISKEEILYLLKDFNP---LDVHKIQNG-CKCFAFVD 76
E + G K +E T VY+ N ++ E + L F + V + NG K F FV
Sbjct: 178 EREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 237
Query: 77 LGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPRAPLVLEKASGEGFGKT 136
+ A++E+NGK + +FV +++ +R ++ ++ E+ E +
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRK------FEQLKQERISRY 291
Query: 137 AAIIQLAPKAPVDLCETEKLRAAF 160
+ L K D + EKLR F
Sbjct: 292 QG-VNLYIKNLDDTIDDEKLRKEF 314
Score = 35.8 bits (81), Expect = 0.062
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 36 VYVGNLPLDISKEEILYLLKDFNPLDVHKIQ---NGCKCFAFVDLGSMQKVTLAIQELNG 92
+Y+ NL I E++ F + K+ K F FV S ++ T A+ E+NG
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 93 KLFHKRKLFVNTSKRPPKRTPDMIQQ 118
++ + L+V ++R +R + Q
Sbjct: 356 RIVGSKPLYVALAQRKEERKAHLTNQ 381
>gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
Length = 382
Score = 41.2 bits (95), Expect = 0.001
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 36 VYVGNLPLDISKEEILYLLKDFNPLDVHKI---QNGCKCFAFVDLGSMQKVTLAIQELNG 92
+++ NL I + YL F + K+ NG K +A+V S+ AI +NG
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
Query: 93 KLFHKRKLFVNTSKRPPKRTPDMIQQPRA 121
+ R+++V K P +R ++ + RA
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRA 196
Score = 33.5 bits (75), Expect = 0.31
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 34 TEVYVGNLPLDISKEEILYLLKDFNPLDVHKI----QNGCKCFAFVDLGSMQKVTLAIQE 89
T V+V N+ DI E++ L ++ P + K+ K F FV + + A+ +
Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLD 258
Query: 90 LNGKLFHKRKLFVNTSKRPPKRTPDMIQQPRAPLVLEKASGEG 132
L+GK + L+V +++ +R ++ ++ + EK+ G
Sbjct: 259 LHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG 301
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 34 TEVYVGNLPLDISKEEILYLLKDFNPLDVHKIQNG----CKCFAFVDLGSMQKVTLAIQE 89
T +YV NLP+D+ ++ + L F + K+ +CF FV+ ++ A+
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 90 LNGKLFHKRKLFVNTSKRPPKRTPDM 115
+NGK R L+ +++ +R ++
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNEL 276
Score = 36.6 bits (83), Expect = 0.037
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 20 VLEEQKSPGFKKRET-EVYVGNLPLDISKEEILYLLKDFNPLDVHKI---QNGCKCFAFV 75
++ Q+ PG +K +++ NL I + + F + K+ ++G + F FV
Sbjct: 84 IMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFV 143
Query: 76 DLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDM 115
+ + AI +NG L + RK+FV K +R ++
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAEL 183
Score = 34.3 bits (77), Expect = 0.18
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 22 EEQKSPGFKKRE-TEVYVGNLPLDISKEEILYLLKDFNPLDV---HKIQNG---CKCFAF 74
E+ K ++ + +YV NL I ++ L K+F+P V K+ K F F
Sbjct: 281 EQMKQDRLRRYQGVNLYVKNLDDSIDDDK---LRKEFSPYGVITSAKVMTEGGHSKGFGF 337
Query: 75 VDLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQ 118
V S ++ T A+ E+NG++ + L+V ++R +R + Q
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQ 381
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 39.7 bits (91), Expect = 0.004
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 20 VLEEQKSPGFKKRET-EVYVGNLPLDISKEEILYLLKDFNPLDVHKI---QNGCKCFAFV 75
++ Q+ P +K +++ NL I + + F + K+ +NG K + FV
Sbjct: 84 IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFV 143
Query: 76 DLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDM 115
+ + AI+++NG L + RK+FV K +R ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Score = 36.2 bits (82), Expect = 0.048
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 22 EEQKSPGFKKRE-TEVYVGNLPLDISKEEILYLLKDFNPLDVHKIQNG----CKCFAFVD 76
E + G + +E T VY+ N D+ E + L F P K+ K F FV
Sbjct: 178 EREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 77 LGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDM 115
+ A+ E+NGK + ++++V +++ +R ++
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 276
Score = 35.8 bits (81), Expect = 0.062
Identities = 62/315 (19%), Positives = 112/315 (35%), Gaps = 37/315 (11%)
Query: 36 VYVGNLPLDISKEEILYLLKDFNPLDVHKIQ---NGCKCFAFVDLGSMQKVTLAIQELNG 92
+YV NL I E + F + K+ K F FV S ++ T A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 93 KLFHKRKLFVNTSKRPPKRTPDMIQQPRAPLVLEKASGEGFGKTAAIIQLAPKAPVDLCE 152
++ + L+V ++R +R + Q + + A ++ P ++ +
Sbjct: 356 RIVATKPLYVALAQRKEERQAHLTNQ--------------YMQRMASVRAVPNPVINPYQ 401
Query: 153 TEKLRAAFFAV--PLEMRGSFL----VLLLRECFRDLSWLALIHSVRGEAGLLVTSIVPK 206
F A + R ++ + LR R + A H + G + P+
Sbjct: 402 PAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPG-AIRPAAPR 460
Query: 207 TPFFWAMHVTEALHQNM--QALFSTLAQAEEQQPYLEGSTVMRGTRCLAEY-HLGDYGHA 263
PF + + + M Q + +T Q +P + R + +Y + +
Sbjct: 461 PPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNP 520
Query: 264 WNRCWVLDRVDTWAVVMFIDFGQLATIPVQSLRSLDSDDFWTIPPLTQPFMLEKDILSSY 323
+V Q + VQ L + + PP Q ML + +
Sbjct: 521 QQHLNAQPQVTM----------QQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLI 570
Query: 324 EVVHRILKGKITGAL 338
+ +H L GKITG L
Sbjct: 571 QAMHPTLAGKITGML 585
>gi|14916461 RNA binding motif protein 18 [Homo sapiens]
Length = 190
Score = 38.5 bits (88), Expect = 0.010
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 26 SPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPLD-----VHK---IQNGCKCFAFVDL 77
S G + +++GNL I++ +L LL+ F + HK ++ + + FV+
Sbjct: 17 SEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNF 76
Query: 78 GSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPRAPLVLEKAS 129
+ Q+ AIQ LNGKL +KL V + KR P+ LE +S
Sbjct: 77 ETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSS 128
>gi|51317355 RNA binding motif, single stranded interacting protein
3 isoform 1 [Homo sapiens]
Length = 437
Score = 38.5 bits (88), Expect = 0.010
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 20/117 (17%)
Query: 18 NGVLEEQKSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPLDVHKI---QNG-CKCFA 73
NGV + Q + ++ T +Y+ NLP+ + ++E+ +LK F + +I NG +
Sbjct: 125 NGV-QAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVG 183
Query: 74 FVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPRAPLVLEKASG 130
F + S +K + IQ NGK +TP I P PL+ + A G
Sbjct: 184 FARMESTEKCEVVIQHFNGKYL---------------KTPPGIPAPSEPLLCKFADG 225
>gi|51317353 RNA binding motif, single stranded interacting protein
3 isoform 3 [Homo sapiens]
Length = 419
Score = 38.5 bits (88), Expect = 0.010
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 20/117 (17%)
Query: 18 NGVLEEQKSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPLDVHKI---QNG-CKCFA 73
NGV + Q + ++ T +Y+ NLP+ + ++E+ +LK F + +I NG +
Sbjct: 124 NGV-QAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVG 182
Query: 74 FVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPRAPLVLEKASG 130
F + S +K + IQ NGK +TP I P PL+ + A G
Sbjct: 183 FARMESTEKCEVVIQHFNGKYL---------------KTPPGIPAPSEPLLCKFADG 224
>gi|51317351 RNA binding motif, single stranded interacting protein
3 isoform 2 [Homo sapiens]
Length = 420
Score = 38.5 bits (88), Expect = 0.010
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 20/117 (17%)
Query: 18 NGVLEEQKSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPLDVHKI---QNG-CKCFA 73
NGV + Q + ++ T +Y+ NLP+ + ++E+ +LK F + +I NG +
Sbjct: 125 NGV-QAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVG 183
Query: 74 FVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDMIQQPRAPLVLEKASG 130
F + S +K + IQ NGK +TP I P PL+ + A G
Sbjct: 184 FARMESTEKCEVVIQHFNGKYL---------------KTPPGIPAPSEPLLCKFADG 225
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 38.5 bits (88), Expect = 0.010
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 20 VLEEQKSPGFKKRET-EVYVGNLPLDISKEEILYLLKDF-NPLDVHKI--QNGCKCFAFV 75
++ Q+ P +K ++V NL I+ + + + F N L + + +NG K + FV
Sbjct: 84 IMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFV 143
Query: 76 DLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDM 115
+ + AI+++NG L + RK+FV K +R ++
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAEL 183
Score = 35.0 bits (79), Expect = 0.11
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 36 VYVGNLPLDISKEEILYLLKDFNPLDVHKIQ---NGCKCFAFVDLGSMQKVTLAIQELNG 92
+YV NL I E + F + K+ K F FV S ++ T A+ E+NG
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 93 KLFHKRKLFVNTSKRPPKR 111
++ + L+V ++R +R
Sbjct: 356 RIVATKPLYVALAQRKEER 374
Score = 33.9 bits (76), Expect = 0.24
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 22 EEQKSPGFKKRE-TEVYVGNLPLDISKEEILYLLKDFNPLDVHKIQNG----CKCFAFVD 76
E + G + +E VY+ N D+ E + L F P K+ K F FV
Sbjct: 178 EREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVS 237
Query: 77 LGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRTPDM 115
+ A+ E+NGK + ++++V +++ +R ++
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 276
Score = 30.0 bits (66), Expect = 3.4
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 286 QLATIPVQSLRSLDSDDFWTIPPLTQPFMLEKDILSSYEVVHRILKGKITGAL 338
Q + VQ +L + + PP Q ML + + + +H L GKITG L
Sbjct: 528 QQLAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGML 580
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 38.1 bits (87), Expect = 0.013
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 33 ETEVYVGNLPLDISKEEILYLLKDFNPLDVHKIQNGCKCFAFVDLGSMQKVTLAIQELNG 92
ET+VYVGNL K E+ + PL I FAFV+ + A++ L+G
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDG 69
Query: 93 KLFHKRKLFVNTSKRPPKRT 112
K+ ++ V S P+R+
Sbjct: 70 KVICGSRVRVELSTGMPRRS 89
>gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4
[Homo sapiens]
Length = 488
Score = 35.4 bits (80), Expect = 0.081
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 20 VLEEQKSPGFKKRETE---VYVGNLPLDISKEEILYLLKDFN-----PLDVHKIQNGCKC 71
+L++Q + G +K E +++ +LP + ++IL + F + + K N KC
Sbjct: 386 LLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKC 445
Query: 72 FAFVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSK 106
F FV + AIQ +NG ++L V +
Sbjct: 446 FGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR 480
>gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1
[Homo sapiens]
Length = 490
Score = 35.4 bits (80), Expect = 0.081
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 20 VLEEQKSPGFKKRETE---VYVGNLPLDISKEEILYLLKDFN-----PLDVHKIQNGCKC 71
+L++Q + G +K E +++ +LP + ++IL + F + + K N KC
Sbjct: 388 LLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKC 447
Query: 72 FAFVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSK 106
F FV + AIQ +NG ++L V +
Sbjct: 448 FGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR 482
>gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2
[Homo sapiens]
Length = 521
Score = 35.4 bits (80), Expect = 0.081
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 20 VLEEQKSPGFKKRETE---VYVGNLPLDISKEEILYLLKDFN-----PLDVHKIQNGCKC 71
+L++Q + G +K E +++ +LP + ++IL + F + + K N KC
Sbjct: 419 LLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKC 478
Query: 72 FAFVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSK 106
F FV + AIQ +NG ++L V +
Sbjct: 479 FGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR 513
>gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3
[Homo sapiens]
Length = 508
Score = 35.4 bits (80), Expect = 0.081
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 20 VLEEQKSPGFKKRETE---VYVGNLPLDISKEEILYLLKDFN-----PLDVHKIQNGCKC 71
+L++Q + G +K E +++ +LP + ++IL + F + + K N KC
Sbjct: 406 LLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKC 465
Query: 72 FAFVDLGSMQKVTLAIQELNGKLFHKRKLFVNTSK 106
F FV + AIQ +NG ++L V +
Sbjct: 466 FGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR 500
>gi|189027090 cytoplasmic polyadenylation element binding protein 4
[Homo sapiens]
Length = 729
Score = 35.0 bits (79), Expect = 0.11
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 16 GKNGVLEEQKSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPLDV---HKIQN----- 67
G Q ++ +V+VG LP DI ++EI + F PL V HK ++
Sbjct: 454 GSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFP 513
Query: 68 --GCKCFAFVDLGSMQKVTLAIQELNGKLF 95
G F D S+Q + A E +GKL+
Sbjct: 514 PKGYAFLLFQDESSVQALIDACIEEDGKLY 543
>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
sapiens]
Length = 370
Score = 35.0 bits (79), Expect = 0.11
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 36 VYVGNLPLDISKEEILYLLKDFNPLDVHKIQN---GCKCFAFVDLGSMQKVTLAIQELNG 92
V++ NL I + + F + K+ + G K +AFV + AI+E+NG
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNG 159
Query: 93 KLFHKRKLFVNTSKRPPKRTPDM 115
KL K+FV K R ++
Sbjct: 160 KLLKGCKVFVGRFKNRKDREAEL 182
Score = 32.3 bits (72), Expect = 0.69
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 34 TEVYVGNLPLDISKEEILYLLKDFNPLDVHKIQNGC----KCFAFVDLGSMQKVTLAIQE 89
T VY+ N D+ E + + + K+ K F FV S + A++E
Sbjct: 190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEE 249
Query: 90 LNGKLFHKRKLFVNTSKRPPKRTPDMIQQPRAPLVLEKASGEGFGKTAAIIQLAPKAPVD 149
+NG+ + + +FV +++ +R + ++Q L E+ G ++L K D
Sbjct: 250 MNGRDINGQLIFVGRAQKKVERQAE-LKQMFEQLKRERIRG------CQGVKLYIKNLDD 302
Query: 150 LCETEKLRAAF 160
+ EKLR F
Sbjct: 303 TIDDEKLRNEF 313
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 34.7 bits (78), Expect = 0.14
Identities = 30/145 (20%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 25 KSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPLD----VHKIQNG-CKCFAFVDLGS 79
+ P + V+VGN+P + ++E++ + + P+ V+ + G K + F +
Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66
Query: 80 MQKVTLAIQELNGKLFHKRKLFVNTSKRPPKRT--------PDMIQQPRAPLVLEKASGE 131
+ A++ LNG+ F R L V+ + + +I+ P + + + E
Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAPE 126
Query: 132 GFGKTAAIIQLAPKAPVDLCETEKL 156
K A+ L P+ +L + KL
Sbjct: 127 SISK--AVASLPPEQMFELMKQMKL 149
>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
Length = 465
Score = 34.7 bits (78), Expect = 0.14
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 36 VYVGNLPLDISKEEILYLLKDFN-----PLDVHKIQNGCKCFAFVDLGSMQKVTLAIQEL 90
+++ +LP + + EIL + F + V + N KCF FV + AIQ +
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441
Query: 91 NGKLFHKRKLFVNTSKRP 108
NG ++L V KRP
Sbjct: 442 NGFQIGMKRLKVQL-KRP 458
>gi|4506447 RNA binding motif, single stranded interacting protein 1
isoform c [Homo sapiens]
Length = 403
Score = 34.7 bits (78), Expect = 0.14
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 19/101 (18%)
Query: 34 TEVYVGNLPLDISKEEILYLLKDFNPLDVHKI----QNGCKCFAFVDLGSMQKVTLAIQE 89
T +Y+ NLPL + ++E+ +LK F + +I + F + S +K I
Sbjct: 141 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 200
Query: 90 LNGKLFHKRKLFVNTSKRPPKRTPDMIQQPRAPLVLEKASG 130
NGK +TP + P PL+ + A G
Sbjct: 201 FNGKFI---------------KTPPGVSAPTEPLLCKFADG 226
>gi|8400718 RNA binding motif, single stranded interacting protein 1
isoform a [Homo sapiens]
Length = 406
Score = 34.7 bits (78), Expect = 0.14
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 19/101 (18%)
Query: 34 TEVYVGNLPLDISKEEILYLLKDFNPLDVHKI----QNGCKCFAFVDLGSMQKVTLAIQE 89
T +Y+ NLPL + ++E+ +LK F + +I + F + S +K I
Sbjct: 141 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 200
Query: 90 LNGKLFHKRKLFVNTSKRPPKRTPDMIQQPRAPLVLEKASG 130
NGK +TP + P PL+ + A G
Sbjct: 201 FNGKFI---------------KTPPGVSAPTEPLLCKFADG 226
>gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]
Length = 312
Score = 34.3 bits (77), Expect = 0.18
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 27 PGFKKRETEVYVGNLPLDISKEEILYLLKDFNP-LDVHKIQN--GCKCFAFVDLGSMQKV 83
P K++ ++V N+P ++ + F LDV I N G K F FV +
Sbjct: 92 PTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDA 151
Query: 84 TLAIQELNGKLFHKRKLFVNTS 105
A ++LNG + RK+ VN +
Sbjct: 152 DRAREKLNGTIVEGRKIEVNNA 173
>gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Homo
sapiens]
Length = 200
Score = 33.5 bits (75), Expect = 0.31
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 20 VLEEQKSPGFKKRET-EVYVGNLPLDISKEEILYLLKDFNPLDVHKI---QNGCKCFAFV 75
++ Q+ P +K V++ NL I + + + F + K+ + G K + FV
Sbjct: 75 IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFV 134
Query: 76 DLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKR 111
+ AI +NG + RK+FV K +R
Sbjct: 135 HFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKER 170
>gi|50345881 cytoplasmic polyadenylation element binding protein 3
[Homo sapiens]
Length = 698
Score = 33.5 bits (75), Expect = 0.31
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 24 QKSPGFKKRETEVYVGNLPLDISKEEILYLLKDFNPLDV---HKIQN-------GCKCFA 73
Q ++ +V+VG LP DI ++EI + F PL V HK ++ G
Sbjct: 431 QNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLL 490
Query: 74 FVDLGSMQKVTLAIQELNGKLF 95
F + S+Q + A E +GKL+
Sbjct: 491 FQEESSVQALIDACLEEDGKLY 512
>gi|109240550 paraspeckle protein 1 [Homo sapiens]
Length = 523
Score = 33.5 bits (75), Expect = 0.31
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 27 PGFKK--RETEVYVGNLPLDISKEEILYLLKDF-NPLDVHKIQNGCKCFAFVDLGSMQKV 83
PG K + ++VGNLP DI++E+ L + + P +V N + F F+ L S
Sbjct: 73 PGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEV--FINRDRGFGFIRLESRTLA 130
Query: 84 TLAIQELNGKLFHKRKL 100
+A EL+G + R L
Sbjct: 131 EIAKAELDGTILKSRPL 147
>gi|38505161 tudor domain containing 1 [Homo sapiens]
Length = 1189
Score = 33.5 bits (75), Expect = 0.31
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 248 GTRCLAEYHLGDYGHAWNRCWVLDRVDTWAVVMFIDFGQLATIPVQSLRSLDS 300
G C A+Y D+ W R VL DT V++ D+G + T+P+ ++ + S
Sbjct: 994 GDACCAKYTSDDF---WYRAVVLGTSDTDVEVLYADYGNIETLPLCRVQPITS 1043
>gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo
sapiens]
Length = 200
Score = 33.5 bits (75), Expect = 0.31
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 20 VLEEQKSPGFKKRET-EVYVGNLPLDISKEEILYLLKDFNPLDVHKI---QNGCKCFAFV 75
++ Q+ P +K V++ NL I + + + F + K+ + G K + FV
Sbjct: 75 IMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFV 134
Query: 76 DLGSMQKVTLAIQELNGKLFHKRKLFVNTSKRPPKR 111
+ AI +NG + RK+FV K +R
Sbjct: 135 HFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKER 170
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,423,147
Number of Sequences: 37866
Number of extensions: 633271
Number of successful extensions: 1600
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 1534
Number of HSP's gapped (non-prelim): 167
length of query: 366
length of database: 18,247,518
effective HSP length: 104
effective length of query: 262
effective length of database: 14,309,454
effective search space: 3749076948
effective search space used: 3749076948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.