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Search of human proteins with 148539642
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148539642 alkB, alkylation repair homolog 5 [Homo sapiens]
(394 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148539642 alkB, alkylation repair homolog 5 [Homo sapiens] 786 0.0
gi|28274705 family with sequence similarity 9, member A [Homo sa... 44 3e-04
gi|126090909 engrailed homeobox 1 [Homo sapiens] 40 0.004
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 38 0.018
gi|38016945 deformed epidermal autoregulatory factor 1 [Homo sap... 36 0.053
gi|239749940 PREDICTED: similar to deformed epidermal autoregula... 36 0.053
gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens] 36 0.069
gi|4506975 solute carrier family 12 (sodium/potassium/chloride t... 35 0.090
gi|21618325 forkhead box E1 [Homo sapiens] 35 0.090
gi|73476377 LBXCOR1 homolog [Homo sapiens] 35 0.090
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 35 0.090
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 35 0.090
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 35 0.090
gi|195927056 alkB, alkylation repair homolog 8 [Homo sapiens] 35 0.12
gi|91208420 bassoon protein [Homo sapiens] 35 0.12
gi|94721338 hypothetical protein LOC54629 isoform b [Homo sapiens] 35 0.12
gi|157151759 hypothetical protein LOC642587 [Homo sapiens] 35 0.15
gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo ... 34 0.20
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ... 34 0.20
gi|116734702 homeobox D13 [Homo sapiens] 34 0.20
gi|4758392 forkhead box D1 [Homo sapiens] 34 0.20
gi|157364934 fibrosin [Homo sapiens] 34 0.20
gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo ... 34 0.26
gi|94721334 hypothetical protein LOC54629 isoform a [Homo sapiens] 34 0.26
gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo sap... 33 0.34
gi|223646113 Sp9 transcription factor homolog [Homo sapiens] 33 0.45
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 33 0.45
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 33 0.45
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 33 0.45
gi|12707580 paired-like homeobox 2b [Homo sapiens] 33 0.45
>gi|148539642 alkB, alkylation repair homolog 5 [Homo sapiens]
Length = 394
Score = 786 bits (2030), Expect = 0.0
Identities = 394/394 (100%), Positives = 394/394 (100%)
Query: 1 MAAASGYTDLREKLKSMTSRDNYKAGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKY 60
MAAASGYTDLREKLKSMTSRDNYKAGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKY
Sbjct: 1 MAAASGYTDLREKLKSMTSRDNYKAGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKY 60
Query: 61 QEDSDPERSDYEEQQLQKEEEARKVKSGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYN 120
QEDSDPERSDYEEQQLQKEEEARKVKSGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYN
Sbjct: 61 QEDSDPERSDYEEQQLQKEEEARKVKSGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYN 120
Query: 121 EHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHR 180
EHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHR
Sbjct: 121 EHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHR 180
Query: 181 VIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVS 240
VIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVS
Sbjct: 181 VIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVS 240
Query: 241 EPVLSLPVRRGSVTVLSGYAADEITHCIRPQDIKERRAVIILRKTRLDAPRLETKSLSSS 300
EPVLSLPVRRGSVTVLSGYAADEITHCIRPQDIKERRAVIILRKTRLDAPRLETKSLSSS
Sbjct: 241 EPVLSLPVRRGSVTVLSGYAADEITHCIRPQDIKERRAVIILRKTRLDAPRLETKSLSSS 300
Query: 301 VLPPSYASDRLSGNNRDPALKPKRSHRKADPDAAHRPRILEMDKEENRRSVLLPTHRRRG 360
VLPPSYASDRLSGNNRDPALKPKRSHRKADPDAAHRPRILEMDKEENRRSVLLPTHRRRG
Sbjct: 301 VLPPSYASDRLSGNNRDPALKPKRSHRKADPDAAHRPRILEMDKEENRRSVLLPTHRRRG 360
Query: 361 SFSSENYWRKSYESSEDCSEAAGSPARKVKMRRH 394
SFSSENYWRKSYESSEDCSEAAGSPARKVKMRRH
Sbjct: 361 SFSSENYWRKSYESSEDCSEAAGSPARKVKMRRH 394
>gi|28274705 family with sequence similarity 9, member A [Homo
sapiens]
Length = 332
Score = 43.9 bits (102), Expect = 3e-04
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Query: 24 KAGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKYQEDSDPERSDYEEQQLQKEEEAR 83
+A EAAAAAA A AAA AAAAAAE V ED + E + EE++ ++EEE
Sbjct: 190 EAEEAEAAAAAAEAAAAAEAAAAAAEVIVV--------EDEEEEEKEEEEEKEEEEEEGE 241
Query: 84 KVKSG 88
+ G
Sbjct: 242 EEGGG 246
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 40.0 bits (92), Expect = 0.004
Identities = 22/32 (68%), Positives = 24/32 (75%)
Query: 24 KAGSREAAAAAAAAVAAAAAAAAAAEPYPVSG 55
KAG+ AAAAAAAA AAAAAAAAA+P G
Sbjct: 194 KAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGG 225
Score = 29.3 bits (64), Expect = 6.5
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 25 AGSREAAAAAAAAVAAAAAAAAAA 48
AG+ +A AAAA AAAAA AAAA
Sbjct: 190 AGASKAGNPAAAAAAAAAAVAAAA 213
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 37.7 bits (86), Expect = 0.018
Identities = 22/27 (81%), Positives = 22/27 (81%)
Query: 30 AAAAAAAAVAAAAAAAAAAEPYPVSGA 56
AAAAAAAA AAAAAAAAAA Y VS A
Sbjct: 225 AAAAAAAAAAAAAAAAAAAAYYQVSAA 251
Score = 34.3 bits (77), Expect = 0.20
Identities = 19/22 (86%), Positives = 19/22 (86%)
Query: 30 AAAAAAAAVAAAAAAAAAAEPY 51
AAAAAAAA AAAAAAAAAA Y
Sbjct: 224 AAAAAAAAAAAAAAAAAAAAAY 245
Score = 32.3 bits (72), Expect = 0.76
Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 23 YKAGSREAAAAAAAAVAAAAAAA----AAAEPYPVSGA 56
+ A + AAAAAAAA AAAAAAA +AA P P + A
Sbjct: 222 HPAAAAAAAAAAAAAAAAAAAAAYYQVSAAGPQPKAAA 259
Score = 31.6 bits (70), Expect = 1.3
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 22 NYKAGSREAAAAAAAAVAAAAAAAAAAEPYPVSG 55
+YKA + AAAAAAAA AAAA A + V+G
Sbjct: 298 SYKAKAAAAAAAAAAAAAAAAGATCLERFHLVNG 331
>gi|38016945 deformed epidermal autoregulatory factor 1 [Homo
sapiens]
Length = 565
Score = 36.2 bits (82), Expect = 0.053
Identities = 23/39 (58%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 30 AAAAAAAAVAAAAAAAAAAE-PYPVSGAKRKYQEDSDPE 67
AA AAAAAVAAAAAAAA E PV +ED+D E
Sbjct: 17 AAVAAAAAVAAAAAAAAGGEAEEPVLSRDEDSEEDADSE 55
>gi|239749940 PREDICTED: similar to deformed epidermal
autoregulatory factor 1 [Homo sapiens]
Length = 426
Score = 36.2 bits (82), Expect = 0.053
Identities = 23/39 (58%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 30 AAAAAAAAVAAAAAAAAAAE-PYPVSGAKRKYQEDSDPE 67
AA AAAAAVAAAAAAAA E PV +ED+D E
Sbjct: 17 AAVAAAAAVAAAAAAAAGGEAEEPVLSRDEDSEEDADSE 55
>gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens]
Length = 446
Score = 35.8 bits (81), Expect = 0.069
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 11 REKLKSMTSRDNYKAGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKR 58
R K K++ +D Y S AAAA AAAAAAAAAA PV +R
Sbjct: 211 RRKTKTLLKKDKYSLPSGLLPPGAAAAAAAAAAAAAAASS-PVGVGQR 257
Score = 30.0 bits (66), Expect = 3.8
Identities = 29/69 (42%), Positives = 32/69 (46%), Gaps = 18/69 (26%)
Query: 2 AAASGYTDLREKLKSMTSRDNYKAGSREAAAAAA----AAVAAAAAAAAAAEPYPVSGAK 57
AAASGY + A S AAAAAA A AAAAAAAAAA G+
Sbjct: 328 AAASGYGGM--------------APSATAAAAAAYGQQPATAAAAAAAAAAMSLGPMGSV 373
Query: 58 RKYQEDSDP 66
K + S P
Sbjct: 374 VKSEPSSPP 382
>gi|4506975 solute carrier family 12 (sodium/potassium/chloride
transporters), member 2 [Homo sapiens]
Length = 1212
Score = 35.4 bits (80), Expect = 0.090
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 25 AGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKYQEDSDPERSDYE 72
AG AAAAAAAA AAAA A A A+ P G + +S+P + E
Sbjct: 90 AGRAAAAAAAAAAAAAAAGAGAGAKQTPADG---EASGESEPAKGSEE 134
Score = 32.0 bits (71), Expect = 1.00
Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 27 SREAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKYQEDSDPERSDYEEQQLQKEEEAR 83
S A AAAAA AAAAAAAAA +GAK Q +D E S E + + EEA+
Sbjct: 87 SENAGRAAAAAAAAAAAAAAAGAG---AGAK---QTPADGEASG-ESEPAKGSEEAK 136
>gi|21618325 forkhead box E1 [Homo sapiens]
Length = 373
Score = 35.4 bits (80), Expect = 0.090
Identities = 24/49 (48%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 11 REKLKSMTSRDNYKAGSREAAAAAAAAVAAAAAAA-------AAAEPYP 52
R K + Y A +AAAAAAAA AAAAAAA AA PYP
Sbjct: 145 RRKRFKRSDLSTYPAYMHDAAAAAAAAAAAAAAAAIFPGAVPAARPPYP 193
Score = 32.3 bits (72), Expect = 0.76
Identities = 19/29 (65%), Positives = 20/29 (68%)
Query: 32 AAAAAAVAAAAAAAAAAEPYPVSGAKRKY 60
AAAAAA AAAAAAAAA P V A+ Y
Sbjct: 164 AAAAAAAAAAAAAAAAIFPGAVPAARPPY 192
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 35.4 bits (80), Expect = 0.090
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 22 NYKAGSREAAAAAAAAVAAAAAAAAAA---EPYPVSGAK 57
+Y A +A A AAA AAAAAAAAAA P P+ GA+
Sbjct: 458 SYPAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAE 496
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 35.4 bits (80), Expect = 0.090
Identities = 20/27 (74%), Positives = 20/27 (74%)
Query: 30 AAAAAAAAVAAAAAAAAAAEPYPVSGA 56
A AAAAAA AAAAAAAAAA P P A
Sbjct: 498 AIAAAAAAAAAAAAAAAAAAPAPALAA 524
Score = 34.3 bits (77), Expect = 0.20
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 23 YKAGSREAAAAAAAAVAAAAAAAAAAEP 50
+ A + AAAAAAAA AAAAAAAAA P
Sbjct: 493 FSAAAAIAAAAAAAAAAAAAAAAAAPAP 520
Score = 31.6 bits (70), Expect = 1.3
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 4 ASGYTDLREKLKSMTSRDNYKAGSREAAAAAAAAVAAAAAAAAAAEPYPVSGA 56
+SG + ++ S R A + AAAAAAAA AAAAAAAA A + A
Sbjct: 475 SSGNSFPPQQAGSPLKRPFSAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAA 527
Score = 30.0 bits (66), Expect = 3.8
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 25 AGSREAAAAAAAAVAAAAAAAAAAEP 50
A + AAAAAAAA A A A AAAA P
Sbjct: 503 AAAAAAAAAAAAAAAPAPALAAAAAP 528
Score = 30.0 bits (66), Expect = 3.8
Identities = 17/27 (62%), Positives = 17/27 (62%)
Query: 30 AAAAAAAAVAAAAAAAAAAEPYPVSGA 56
AAAA A A AAA A AAAA P P A
Sbjct: 524 AAAAPALAAAAAPALAAAAAPAPAPAA 550
Score = 29.6 bits (65), Expect = 4.9
Identities = 18/32 (56%), Positives = 19/32 (59%)
Query: 25 AGSREAAAAAAAAVAAAAAAAAAAEPYPVSGA 56
A + AAAAAAAA AAA A A AA P A
Sbjct: 501 AAAAAAAAAAAAAAAAAPAPALAAAAAPALAA 532
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 35.4 bits (80), Expect = 0.090
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 30 AAAAAAAAVAAAAAAAAAAEPYPVSGAKRKYQEDSDPERSDYEEQQLQKEEEARKVKSGI 89
AAAAAAAA AAA+AAA +G D+DP E + + + R++K G+
Sbjct: 229 AAAAAAAAAGQVAAASAAAAVVGAAGLASICDSDTDPR----ELEAFAERFKQRRIKLGV 284
Query: 90 RQ 91
Q
Sbjct: 285 TQ 286
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 35.4 bits (80), Expect = 0.090
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 26 GSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKYQEDSDPERSDYEEQQLQKEEEARKV 85
G + A +A A AAAAAAAAAA + A+++ Q+ ++ ++QQ Q++++ V
Sbjct: 77 GVKTVALSAKEAAAAAAAAAAAA-----AAAQQQQQQQQQQQQQQQQQQQQQQQQQLNHV 131
Score = 35.0 bits (79), Expect = 0.12
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 30 AAAAAAAAVAAAAAAAAAAEPYPVSGAKRKYQEDSDPERSDYEEQQLQKEEEARK----- 84
A +A AA AAAAAAAAAA +++ Q+ ++ ++QQL + + K
Sbjct: 82 ALSAKEAAAAAAAAAAAAAAAQQQQQQQQQQQQQQQQQQQQQQQQQLNHVDGSSKPAVLA 141
Query: 85 VKSGIRQMRLFSQDECAKIEARIDEVVSRAE 115
SG+ + L + A A E SR E
Sbjct: 142 APSGLERYGLSAAAAAAAAAAAAVEQRSRFE 172
Score = 30.8 bits (68), Expect = 2.2
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 20 RDNYKAGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKYQEDSDPERSDYEEQQLQKE 79
+D G A++A AAAAAA + A ++ Q+ ++ ++QQ Q++
Sbjct: 65 QDGRSPGPPPPVGVKTVALSAKEAAAAAAAAAAAAAAAQQQQQQQQQQQQQQQQQQQQQQ 124
Query: 80 EE 81
++
Sbjct: 125 QQ 126
>gi|195927056 alkB, alkylation repair homolog 8 [Homo sapiens]
Length = 664
Score = 35.0 bits (79), Expect = 0.12
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 192 INDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPVRRG 251
IN Y+PG I +H+D FE IVS+S S+ + F P ++ PV+ LP R
Sbjct: 226 INQYEPGQGIPAHIDTHSAFEDEIVSLSLGSEIVMDFK-----HPDGIAVPVM-LP--RR 277
Query: 252 SVTVLSGYAADEITHCI 268
S+ V++G + TH I
Sbjct: 278 SLLVMTGESRYLWTHGI 294
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 35.0 bits (79), Expect = 0.12
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 25 AGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKRK----YQEDSDPERSDYEEQQLQKEE 80
A +EAA A A A A A A P SGA + +E S ER +++QL + E
Sbjct: 2317 AAIKEAAGAPAPAPLAGQKPPADAAPGGGSGALSRPGFEKEEASQEERQRKQQEQLLQLE 2376
Query: 81 EARKVKSGIRQMRLFSQDECAKIE 104
R +RQ+RL + E ++E
Sbjct: 2377 RERVELEKLRQLRLQEELERERVE 2400
>gi|94721338 hypothetical protein LOC54629 isoform b [Homo sapiens]
Length = 620
Score = 35.0 bits (79), Expect = 0.12
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 6 GYTDLREKLKSMTSRDNYKAGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKYQEDSD 65
G +DL E K + ++ +A AAA AAAA+ A +P S + + +S+
Sbjct: 539 GISDL-ELAKKLQEEEDRRASQYYQEQEQAAAAAAAASTQAQGQPAQASPSSGRQSGNSE 597
Query: 66 PERSDYEEQQLQKEEE 81
+R + E+ +KE+E
Sbjct: 598 RKRKEPREKDKEKEKE 613
>gi|157151759 hypothetical protein LOC642587 [Homo sapiens]
Length = 102
Score = 34.7 bits (78), Expect = 0.15
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 21 DNYKAGSREAAAAAAAAVAAAAAAAAAA 48
DN++A + A AAA VAAAAAAAAAA
Sbjct: 67 DNHEASAATATTAAATTVAAAAAAAAAA 94
>gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo
sapiens]
Length = 493
Score = 34.3 bits (77), Expect = 0.20
Identities = 20/32 (62%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 25 AGSREAAAAAAAAVAAAAAAAAAAEPYPVSGA 56
A ++E+AAAAAAA AAAAAA AAA P P + +
Sbjct: 90 AAAQESAAAAAAA-AAAAAAVAAAPPAPAAAS 120
Score = 30.4 bits (67), Expect = 2.9
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 25 AGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKR 58
A + AAAAAAAAVAAA A AAA + K+
Sbjct: 96 AAAAAAAAAAAAAVAAAPPAPAAASTVDTAALKQ 129
>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
sapiens]
Length = 477
Score = 34.3 bits (77), Expect = 0.20
Identities = 20/32 (62%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 25 AGSREAAAAAAAAVAAAAAAAAAAEPYPVSGA 56
A ++E+AAAAAAA AAAAAA AAA P P + +
Sbjct: 90 AAAQESAAAAAAA-AAAAAAVAAAPPAPAAAS 120
Score = 30.8 bits (68), Expect = 2.2
Identities = 20/29 (68%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 32 AAAAAAVAAAAAAAAAAEPYPV---SGAK 57
AAAAAA AAAAAAA AA P V SGA+
Sbjct: 435 AAAAAAAAAAAAAAVAAPPTAVGSLSGAE 463
Score = 30.4 bits (67), Expect = 2.9
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 25 AGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKR 58
A + AAAAAAAAVAAA A AAA + K+
Sbjct: 96 AAAAAAAAAAAAAVAAAPPAPAAASTVDTAALKQ 129
Score = 28.9 bits (63), Expect = 8.4
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 26 GSREAAAAAAAAVAAAAAAAAAAEPYPVS 54
G+ E AAAA AAAAAAAAA P +
Sbjct: 427 GTGEVCPMAAAAAAAAAAAAAAVAAPPTA 455
>gi|116734702 homeobox D13 [Homo sapiens]
Length = 343
Score = 34.3 bits (77), Expect = 0.20
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 25 AGSREAAAAAAAAVAAAAAAAAAAEPYP 52
AG+ AAAAAA AAAAAAAA+ YP
Sbjct: 50 AGTHSGRAAAAAAAAAAAAAAASGFAYP 77
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 34.3 bits (77), Expect = 0.20
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 2 AAASGYTDLREKLKSMTSRDNYKAGSREAAAAAAAAVAAAAAAAAAAEPYPVS 54
AA +G +S S ++ GS AAAAAAA AAAAA A+ P PV+
Sbjct: 346 AAKAGGPGASALARSPFSIESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVA 398
>gi|157364934 fibrosin [Homo sapiens]
Length = 460
Score = 34.3 bits (77), Expect = 0.20
Identities = 20/29 (68%), Positives = 21/29 (72%)
Query: 24 KAGSREAAAAAAAAVAAAAAAAAAAEPYP 52
K +E AAAAAAA AAAAAAAAAA P
Sbjct: 304 KEERKEEAAAAAAAAAAAAAAAAAAATGP 332
Score = 32.0 bits (71), Expect = 1.00
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 3 AASGYTDLREKLKSMTSRDNYKAGSREAAAAAAAAVAAAAAAAAAAE 49
A +G R +S+ ++ K + AAAAAAAA AAAAAAA +
Sbjct: 287 ARAGEEGPRPTKESVRVKEERKEEAAAAAAAAAAAAAAAAAAATGPQ 333
Score = 31.2 bits (69), Expect = 1.7
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 28 REAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKYQEDSDP 66
R+ AAAAAA AAAAAAAAAA G ++ P
Sbjct: 307 RKEEAAAAAAAAAAAAAAAAAAATGPQGLHLLFERPRPP 345
>gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo
sapiens]
Length = 368
Score = 33.9 bits (76), Expect = 0.26
Identities = 28/71 (39%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 4 ASGYTDLREKLKSMTSRDNYKAGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKYQED 63
A G R L S G+R A +++AA AAAAAAAAAA +SG
Sbjct: 299 ARGSRSRRRYLWRWDSAAGVAGGARAALSSSAAEAAAAAAAAAAARMDFLSGPSPAASAA 358
Query: 64 SDPERSDYEEQ 74
S PER D Q
Sbjct: 359 S-PERRDPARQ 368
>gi|94721334 hypothetical protein LOC54629 isoform a [Homo sapiens]
Length = 621
Score = 33.9 bits (76), Expect = 0.26
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 6 GYTDLREKLKSMTSRDNYKAGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKYQEDSD 65
G +DL K D + + AAAA AAA+ A +P S + + +S+
Sbjct: 539 GISDLELAKKLQEEEDRRASQYYQEQEQAAAAAAAASTQAQQGQPAQASPSSGRQSGNSE 598
Query: 66 PERSDYEEQQLQKEEE 81
+R + E+ +KE+E
Sbjct: 599 RKRKEPREKDKEKEKE 614
>gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo
sapiens]
Length = 558
Score = 33.5 bits (75), Expect = 0.34
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 12/127 (9%)
Query: 28 REAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKYQEDSDPERSDYEEQQLQKEEEARKVKS 87
REAA A A AE V Y+ DS Y+E Q +KEE K+
Sbjct: 47 REAAKKQAMKQTKLEIQKALAEDATV------YEYDSI-----YDEMQKKKEENNPKLLL 95
Query: 88 GIRQMRLFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYGAQLQK 147
G + + + +E R E R EK + E +++ +K F Y +LQ+
Sbjct: 96 GKDRKPKYIHNLLKAVEIRKKEQEKRMEKKIQREREMEKGEFDDKEAFVTS-AYKKKLQE 154
Query: 148 RGPGQER 154
R +ER
Sbjct: 155 RAEEEER 161
>gi|223646113 Sp9 transcription factor homolog [Homo sapiens]
Length = 484
Score = 33.1 bits (74), Expect = 0.45
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 4 ASGYTDLREKLKSMTSRDNYKAGSREAAAAAAAAVAAAAAAAAAAE 49
AS R + + D+ + +R AAAAAAAA AAAAAA+A +
Sbjct: 430 ASNLETPRSESPDLILHDSGVSAARAAAAAAAAAAAAAAAASAGGK 475
Score = 32.0 bits (71), Expect = 1.00
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 22 NYKAGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKYQEDSDPERSDYEEQQLQKEEE 81
+Y S AAAAA+A+ + AAAAAA S R+Y + + + +E +
Sbjct: 266 SYSDSSAAVAAAAASAMISGAAAAAAGGSSARSA--RRYSGRATCDCPNCQEAERLGPAG 323
Query: 82 ARKVKSGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTY 141
A + G+ + C K+ + + K HT +R + N F G+ +T
Sbjct: 324 ASLRRKGLHSCHI---PGCGKVYGKTSHL-----KAHLRWHTGERPFVCNWLFCGKRFTR 375
Query: 142 GAQLQK 147
+LQ+
Sbjct: 376 SDELQR 381
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 33.1 bits (74), Expect = 0.45
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 304 PSYASDRLSGNNRDPALKPKRSHRKADPDAAHRPRILEMDKEENRRSVLLPTHRRRG--- 360
P A R + KP+R +KA AA DK++ R+ + RG
Sbjct: 432 PKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQGRQKASAAGTKSRGGGL 491
Query: 361 -SFSSENYWRKSY--ESSEDCSEAAGSPARKVKMRR 393
S S +N WR+ E++ + + AAG+ +R K R
Sbjct: 492 KSHSGKNLWRRGQKAEAAGEKATAAGAKSRGRKQPR 527
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 33.1 bits (74), Expect = 0.45
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 16 SMTSRDNYKAGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKYQEDSDP 66
S + + + S A++A+AAA AAAAAAAAA+ P + ++ S P
Sbjct: 119 SPSGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPP 169
Score = 31.6 bits (70), Expect = 1.3
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 14 LKSMTSRDNYKAGSREAAAAAAAAVAAAAAAAAAAEPYP 52
L S + + + S A+A++A+A AAAAAAAAAA P
Sbjct: 115 LPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASSP 153
Score = 30.8 bits (68), Expect = 2.2
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 1 MAAASGYTDLREKLKSMTSRDNYKAGSREAAAAAAAAVAAAAAAAAAA 48
M ASG +S + A + A+AAAAAA AAAAAA++ A
Sbjct: 107 MPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASSPA 154
>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
[Homo sapiens]
Length = 593
Score = 33.1 bits (74), Expect = 0.45
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 25 AGSREAAAAAAAAVAAAAAAAAAAEPYPVSGAKRKYQEDSDPERSDYEEQQLQKEEEARK 84
AG AA AAA AAAA AA AA+ + + K + PE+ + L +E+ R
Sbjct: 418 AGHPVVAAQAAAVQAAAAQAAVAAQAAALEQLREKLESAEPPEK----KMALVADEQQRL 473
Query: 85 VKSGIRQ 91
++ ++Q
Sbjct: 474 MQRALQQ 480
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 33.1 bits (74), Expect = 0.45
Identities = 19/23 (82%), Positives = 19/23 (82%)
Query: 26 GSREAAAAAAAAVAAAAAAAAAA 48
G AAAAAAAA AAAAAAAAAA
Sbjct: 237 GKGGAAAAAAAAAAAAAAAAAAA 259
Score = 33.1 bits (74), Expect = 0.45
Identities = 18/23 (78%), Positives = 19/23 (82%)
Query: 24 KAGSREAAAAAAAAVAAAAAAAA 46
K G+ AAAAAAAA AAAAAAAA
Sbjct: 238 KGGAAAAAAAAAAAAAAAAAAAA 260
Score = 32.7 bits (73), Expect = 0.58
Identities = 19/26 (73%), Positives = 20/26 (76%)
Query: 30 AAAAAAAAVAAAAAAAAAAEPYPVSG 55
AAAAAAAA AAAAAAAAAA +G
Sbjct: 242 AAAAAAAAAAAAAAAAAAAGGLAAAG 267
Score = 32.3 bits (72), Expect = 0.76
Identities = 18/22 (81%), Positives = 18/22 (81%)
Query: 26 GSREAAAAAAAAVAAAAAAAAA 47
G AAAAAAAA AAAAAAAAA
Sbjct: 239 GGAAAAAAAAAAAAAAAAAAAA 260
Score = 30.0 bits (66), Expect = 3.8
Identities = 18/31 (58%), Positives = 19/31 (61%)
Query: 25 AGSREAAAAAAAAVAAAAAAAAAAEPYPVSG 55
A + AAAAAAAA AAAAA AA P G
Sbjct: 242 AAAAAAAAAAAAAAAAAAAGGLAAAGGPGQG 272
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,708,249
Number of Sequences: 37866
Number of extensions: 749490
Number of successful extensions: 9226
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 7284
Number of HSP's gapped (non-prelim): 1230
length of query: 394
length of database: 18,247,518
effective HSP length: 104
effective length of query: 290
effective length of database: 14,309,454
effective search space: 4149741660
effective search space used: 4149741660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.