Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 148277548
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148277548 microtubule-associated protein 1 light chain 3
beta 2 [Homo sapiens]
(125 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148277548 microtubule-associated protein 1 light chain 3 beta... 248 8e-67
gi|12383056 microtubule-associated proteins 1A/1B light chain 3 ... 244 2e-65
gi|169183885 PREDICTED: similar to microtubule-associated protei... 210 2e-55
gi|169179756 PREDICTED: similar to microtubule-associated protei... 210 2e-55
gi|169180155 PREDICTED: similar to microtubule-associated protei... 210 2e-55
gi|14210522 microtubule-associated protein 1 light chain 3 alpha... 201 9e-53
gi|31563518 microtubule-associated protein 1 light chain 3 alpha... 182 7e-47
gi|239755918 PREDICTED: similar to microtubule-associated protei... 150 2e-37
gi|239750436 PREDICTED: similar to microtubule-associated protei... 150 2e-37
gi|239744738 PREDICTED: similar to microtubule-associated protei... 150 2e-37
gi|51972260 microtubule-associated protein 1 light chain 3 gamma... 132 7e-32
gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo sapi... 89 9e-19
gi|13899219 GABA(A) receptor-associated protein like 1 [Homo sap... 74 2e-14
gi|6005764 GABA(A) receptor-associated protein [Homo sapiens] 72 8e-14
gi|38261969 APG12 autophagy 12-like [Homo sapiens] 30 0.62
gi|239749462 PREDICTED: similar to ubiquitin protein ligase E3 c... 27 5.2
gi|113420453 PREDICTED: similar to ubiquitin protein ligase E3 c... 27 5.2
gi|55770840 chloride channel 3 isoform e [Homo sapiens] 27 5.2
gi|55770838 chloride channel 3 isoform b [Homo sapiens] 27 5.2
gi|15147337 ubiquitin protein ligase E3 component n-recognin 5 [... 27 5.2
gi|153791466 AMIGO protein [Homo sapiens] 27 5.2
gi|157694524 plexin D1 [Homo sapiens] 26 6.8
gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens] 26 6.8
>gi|148277548 microtubule-associated protein 1 light chain 3 beta 2
[Homo sapiens]
Length = 125
Score = 248 bits (633), Expect = 8e-67
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
Query: 121 MKLSV 125
MKLSV
Sbjct: 121 MKLSV 125
>gi|12383056 microtubule-associated proteins 1A/1B light chain 3
[Homo sapiens]
Length = 125
Score = 244 bits (622), Expect = 2e-65
Identities = 124/125 (99%), Positives = 124/125 (99%)
Query: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMV ASQETFG
Sbjct: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
Query: 121 MKLSV 125
MKLSV
Sbjct: 121 MKLSV 125
>gi|169183885 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 157
Score = 210 bits (535), Expect = 2e-55
Identities = 110/126 (87%), Positives = 117/126 (92%), Gaps = 3/126 (2%)
Query: 2 PSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPD--HVN 59
P+EKTFKQRRTF+QRV DVRLI+EQHP K PVI ERY+GEKQLPVLDKTKFLVPD VN
Sbjct: 33 PAEKTFKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 91
Query: 60 MSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETF 119
MSELIKIIRRRLQLNANQAF L+VNGHSMVSVSTP+SEVYESEKDEDGFLYMV ASQET+
Sbjct: 92 MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 151
Query: 120 GMKLSV 125
GMKLSV
Sbjct: 152 GMKLSV 157
>gi|169179756 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 377
Score = 210 bits (535), Expect = 2e-55
Identities = 110/126 (87%), Positives = 117/126 (92%), Gaps = 3/126 (2%)
Query: 2 PSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPD--HVN 59
P+EKTFKQRRTF+QRV DVRLI+EQHP K PVI ERY+GEKQLPVLDKTKFLVPD VN
Sbjct: 253 PAEKTFKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 311
Query: 60 MSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETF 119
MSELIKIIRRRLQLNANQAF L+VNGHSMVSVSTP+SEVYESEKDEDGFLYMV ASQET+
Sbjct: 312 MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 371
Query: 120 GMKLSV 125
GMKLSV
Sbjct: 372 GMKLSV 377
>gi|169180155 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 377
Score = 210 bits (535), Expect = 2e-55
Identities = 110/126 (87%), Positives = 117/126 (92%), Gaps = 3/126 (2%)
Query: 2 PSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPD--HVN 59
P+EKTFKQRRTF+QRV DVRLI+EQHP K PVI ERY+GEKQLPVLDKTKFLVPD VN
Sbjct: 253 PAEKTFKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 311
Query: 60 MSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETF 119
MSELIKIIRRRLQLNANQAF L+VNGHSMVSVSTP+SEVYESEKDEDGFLYMV ASQET+
Sbjct: 312 MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 371
Query: 120 GMKLSV 125
GMKLSV
Sbjct: 372 GMKLSV 377
>gi|14210522 microtubule-associated protein 1 light chain 3 alpha
isoform a [Homo sapiens]
Length = 121
Score = 201 bits (512), Expect = 9e-53
Identities = 98/120 (81%), Positives = 110/120 (91%)
Query: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
MPS++ FKQRR+F R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
Sbjct: 1 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
Query: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
SEL+KIIRRRLQLN QAFFLLVN HSMVSVSTPI+++YE EKDEDGFLYMV ASQETFG
Sbjct: 61 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
>gi|31563518 microtubule-associated protein 1 light chain 3 alpha
isoform b [Homo sapiens]
Length = 125
Score = 182 bits (461), Expect = 7e-47
Identities = 89/105 (84%), Positives = 98/105 (93%)
Query: 16 RVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNA 75
R ++V+ IR+QHP+KIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSEL+KIIRRRLQLN
Sbjct: 20 RCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNP 79
Query: 76 NQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
QAFFLLVN HSMVSVSTPI+++YE EKDEDGFLYMV ASQETFG
Sbjct: 80 TQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 124
>gi|239755918 PREDICTED: similar to microtubule-associated protein 1
light chain 3 beta [Homo sapiens]
Length = 105
Score = 150 bits (379), Expect = 2e-37
Identities = 85/125 (68%), Positives = 90/125 (72%), Gaps = 22/125 (17%)
Query: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
M SEKTFKQ TF+ RY+GEK+LPVLDKTKFLVPDHVNM
Sbjct: 1 MLSEKTFKQCCTFK----------------------RYQGEKELPVLDKTKFLVPDHVNM 38
Query: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
SEL KII+R L+LNANQAFFLLVNG S VSVSTP SEVYE EKDEDGFLY V ASQE FG
Sbjct: 39 SELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFG 98
Query: 121 MKLSV 125
KLSV
Sbjct: 99 RKLSV 103
>gi|239750436 PREDICTED: similar to microtubule-associated protein 1
light chain 3 beta [Homo sapiens]
Length = 105
Score = 150 bits (379), Expect = 2e-37
Identities = 85/125 (68%), Positives = 90/125 (72%), Gaps = 22/125 (17%)
Query: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
M SEKTFKQ TF+ RY+GEK+LPVLDKTKFLVPDHVNM
Sbjct: 1 MLSEKTFKQCCTFK----------------------RYQGEKELPVLDKTKFLVPDHVNM 38
Query: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
SEL KII+R L+LNANQAFFLLVNG S VSVSTP SEVYE EKDEDGFLY V ASQE FG
Sbjct: 39 SELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFG 98
Query: 121 MKLSV 125
KLSV
Sbjct: 99 RKLSV 103
>gi|239744738 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 105
Score = 150 bits (379), Expect = 2e-37
Identities = 85/125 (68%), Positives = 90/125 (72%), Gaps = 22/125 (17%)
Query: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
M SEKTFKQ TF+ RY+GEK+LPVLDKTKFLVPDHVNM
Sbjct: 1 MLSEKTFKQCCTFK----------------------RYQGEKELPVLDKTKFLVPDHVNM 38
Query: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
SEL KII+R L+LNANQAFFLLVNG S VSVSTP SEVYE EKDEDGFLY V ASQE FG
Sbjct: 39 SELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFG 98
Query: 121 MKLSV 125
KLSV
Sbjct: 99 RKLSV 103
>gi|51972260 microtubule-associated protein 1 light chain 3 gamma
[Homo sapiens]
Length = 147
Score = 132 bits (332), Expect = 7e-32
Identities = 65/120 (54%), Positives = 86/120 (71%)
Query: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM 60
+PS + FKQR++ R E+V IR + P KIPV++ERY E LP LDKTKFLVP + M
Sbjct: 7 IPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTM 66
Query: 61 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
++ + IIR R+ L A +AF+LLVN S+VS+S ++E+Y KDEDGF+YM ASQETFG
Sbjct: 67 TQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126
>gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo
sapiens]
Length = 117
Score = 89.0 bits (219), Expect = 9e-19
Identities = 44/114 (38%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
Query: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
FK+ + E R + IR ++P ++PVI+E+ G Q+ +DK K+LVP + +++ + I
Sbjct: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63
Query: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
IR+R+QL + +A FL V+ ++ S + ++YE EKDEDGFLY+ + + TFG
Sbjct: 64 IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>gi|13899219 GABA(A) receptor-associated protein like 1 [Homo
sapiens]
Length = 117
Score = 74.3 bits (181), Expect = 2e-14
Identities = 36/114 (31%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
+K+ FE R ++ IR+++P ++PVI+E+ + ++P LDK K+LVP + + + +
Sbjct: 5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTVGQFYFL 63
Query: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
IR+R+ L A F VN +++ S + ++YE +ED FLY+ + + +G
Sbjct: 64 IRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
>gi|6005764 GABA(A) receptor-associated protein [Homo sapiens]
Length = 117
Score = 72.4 bits (176), Expect = 8e-14
Identities = 35/115 (30%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
+K+ FE+R + IR+++P ++PVI+E+ + ++ LDK K+LVP + + + +
Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPSDLTVGQFYFL 63
Query: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFGM 121
IR+R+ L A A F VN + + S + ++Y+ +ED FLY+ + + +G+
Sbjct: 64 IRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117
>gi|38261969 APG12 autophagy 12-like [Homo sapiens]
Length = 187
Score = 29.6 bits (65), Expect = 0.62
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 30 KIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMV 89
KI +++ K P++ K+ V + LI I++ L+L A++ F+ VN
Sbjct: 101 KIDILL---KAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAP 157
Query: 90 SVSTPISEVYESEKDEDGFLYMVCASQ 116
S + +YE + + C SQ
Sbjct: 158 SPDQEVGTLYECFGSDGKLVLHYCKSQ 184
>gi|239749462 PREDICTED: similar to ubiquitin protein ligase E3
component n-recognin 5 isoform 2 [Homo sapiens]
Length = 2277
Score = 26.6 bits (57), Expect = 5.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 96 SEVYESEKDEDGFLYMVCAS 115
+E+ SEK+ED F+ MVC S
Sbjct: 621 AEISSSEKEEDVFMGMVCPS 640
>gi|113420453 PREDICTED: similar to ubiquitin protein ligase E3
component n-recognin 5 isoform 1 [Homo sapiens]
Length = 2796
Score = 26.6 bits (57), Expect = 5.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 96 SEVYESEKDEDGFLYMVCAS 115
+E+ SEK+ED F+ MVC S
Sbjct: 1140 AEISSSEKEEDVFMGMVCPS 1159
>gi|55770840 chloride channel 3 isoform e [Homo sapiens]
Length = 866
Score = 26.6 bits (57), Expect = 5.2
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 10 RRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRR 69
R+ E V R+ QH +P E + K +LD + F V DH M ++ I R+
Sbjct: 720 RKKQEGIVGSSRVCFAQHTPSLPA--ESPRPLKLRSILDMSPFTVTDHTPMEIVVDIFRK 777
>gi|55770838 chloride channel 3 isoform b [Homo sapiens]
Length = 818
Score = 26.6 bits (57), Expect = 5.2
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 10 RRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRR 69
R+ E V R+ QH +P E + K +LD + F V DH M ++ I R+
Sbjct: 720 RKKQEGIVGSSRVCFAQHTPSLPA--ESPRPLKLRSILDMSPFTVTDHTPMEIVVDIFRK 777
>gi|15147337 ubiquitin protein ligase E3 component n-recognin 5 [Homo
sapiens]
Length = 2799
Score = 26.6 bits (57), Expect = 5.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 96 SEVYESEKDEDGFLYMVCAS 115
+E+ SEK+ED F+ MVC S
Sbjct: 1142 AEISSSEKEEDVFMGMVCPS 1161
>gi|153791466 AMIGO protein [Homo sapiens]
Length = 493
Score = 26.6 bits (57), Expect = 5.2
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 89 VSVSTPISEVYESEKDEDGFLYMVCASQETFGMKLSV 125
VSVS S +++ + EDG +Y A ETF LSV
Sbjct: 318 VSVSKDGSLLFQQVQVEDGGVYTCYAMGETFNETLSV 354
>gi|157694524 plexin D1 [Homo sapiens]
Length = 1925
Score = 26.2 bits (56), Expect = 6.8
Identities = 11/48 (22%), Positives = 26/48 (54%)
Query: 69 RRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQ 116
R L++N N++ ++ V+ P+ V + + + G+LY++ + Q
Sbjct: 493 RLLKINLNESMQVVSRRVVTVAYGEPVHHVMQFDPADSGYLYLMTSHQ 540
>gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]
Length = 1495
Score = 26.2 bits (56), Expect = 6.8
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 23 IREQHPTKIPVIIERYKGEKQ 43
+++++P IPV+ E YKGEK+
Sbjct: 1181 LQQRNPPVIPVLQEIYKGEKK 1201
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,193,874
Number of Sequences: 37866
Number of extensions: 152305
Number of successful extensions: 370
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 23
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.