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Search of human proteins with 145580621
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|145580621 B and T lymphocyte associated isoform 1 [Homo
sapiens]
(289 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|145580621 B and T lymphocyte associated isoform 1 [Homo sapiens] 603 e-173
gi|145580619 B and T lymphocyte associated isoform 2 [Homo sapiens] 479 e-136
gi|116008194 myosin light chain kinase isoform 3A [Homo sapiens] 36 0.045
gi|116008192 myosin light chain kinase isoform 1 [Homo sapiens] 36 0.045
gi|4826706 EBV-induced G protein-coupled receptor 2 [Homo sapiens] 35 0.077
gi|110349719 titin isoform N2-A [Homo sapiens] 35 0.10
gi|116008190 myosin light chain kinase isoform 3B [Homo sapiens] 34 0.13
gi|116008188 myosin light chain kinase isoform 2 [Homo sapiens] 34 0.13
gi|139948432 adlican [Homo sapiens] 34 0.13
gi|28872814 semaphorin 4G [Homo sapiens] 34 0.17
gi|110349721 titin isoform novex-3 [Homo sapiens] 33 0.22
gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens] 33 0.22
gi|19743898 receptor tyrosine kinase-like orphan receptor 2 prec... 33 0.29
gi|148005039 v-kit Hardy-Zuckerman 4 feline sarcoma viral oncoge... 33 0.38
gi|4557695 v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene... 33 0.38
gi|41352061 metalloprotease 1 [Homo sapiens] 33 0.38
gi|211059429 synaptotagmin II [Homo sapiens] 32 0.50
gi|31543670 synaptotagmin II [Homo sapiens] 32 0.50
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 32 0.65
gi|88979855 PREDICTED: similar to v-kit Hardy-Zuckerman 4 feline... 32 0.65
gi|27262624 ATP-binding cassette, sub-family A , member 5 [Homo ... 32 0.65
gi|27262626 ATP-binding cassette, sub-family A , member 5 [Homo ... 32 0.65
gi|27886631 CD8b antigen isoform 1 precursor [Homo sapiens] 32 0.65
gi|4826667 CD8b antigen isoform 5 precursor [Homo sapiens] 32 0.65
gi|27886635 CD8b antigen isoform 3 precursor [Homo sapiens] 32 0.65
gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Ho... 30 1.9
gi|27894376 cell adhesion molecule with homology to L1CAM precur... 30 3.2
gi|27886637 CD8b antigen isoform 4 precursor [Homo sapiens] 30 3.2
gi|132814489 low affinity immunoglobulin gamma Fc region recepto... 29 4.2
gi|10864029 junctional adhesion molecule 2 precursor [Homo sapiens] 29 4.2
>gi|145580621 B and T lymphocyte associated isoform 1 [Homo sapiens]
Length = 289
Score = 603 bits (1555), Expect = e-173
Identities = 289/289 (100%), Positives = 289/289 (100%)
Query: 1 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV 60
MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV
Sbjct: 1 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV 60
Query: 61 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ 120
KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ
Sbjct: 61 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ 120
Query: 121 SNLIESHSTTLYVTDVKSASERPSKDEMASRPWLLYSLLPLGGLPLLITTCFCLFCCLRR 180
SNLIESHSTTLYVTDVKSASERPSKDEMASRPWLLYSLLPLGGLPLLITTCFCLFCCLRR
Sbjct: 121 SNLIESHSTTLYVTDVKSASERPSKDEMASRPWLLYSLLPLGGLPLLITTCFCLFCCLRR 180
Query: 181 HQGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCFRMQEGS 240
HQGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCFRMQEGS
Sbjct: 181 HQGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCFRMQEGS 240
Query: 241 EVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVRS 289
EVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVRS
Sbjct: 241 EVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVRS 289
>gi|145580619 B and T lymphocyte associated isoform 2 [Homo sapiens]
Length = 241
Score = 479 bits (1234), Expect = e-136
Identities = 241/289 (83%), Positives = 241/289 (83%), Gaps = 48/289 (16%)
Query: 1 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV 60
MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV
Sbjct: 1 MKTLPAMLGTGKLFWVFFLIPYLDIWNIHGKESCDVQLYIKRQSEHSILAGDPFELECPV 60
Query: 61 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ 120
KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ
Sbjct: 61 KYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ 120
Query: 121 SNLIESHSTTLYVTDVKSASERPSKDEMASRPWLLYSLLPLGGLPLLITTCFCLFCCLRR 180
SNLIESHSTTLYVT
Sbjct: 121 SNLIESHSTTLYVT---------------------------------------------- 134
Query: 181 HQGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCFRMQEGS 240
GKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCFRMQEGS
Sbjct: 135 --GKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLSETGIYDNDPDLCFRMQEGS 192
Query: 241 EVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVRS 289
EVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVRS
Sbjct: 193 EVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTEYASICVRS 241
>gi|116008194 myosin light chain kinase isoform 3A [Homo sapiens]
Length = 1863
Score = 35.8 bits (81), Expect = 0.045
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 25/132 (18%)
Query: 27 NIHGKESCDVQLYIKRQS-------------EHSILAGDPFELECPVKYCANRPHVTWCK 73
N G+ SC L ++R + + +++ G F L+C V+ P +TW
Sbjct: 491 NAQGQLSCSWTLQVERLAVMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPV-PRITWL- 548
Query: 74 LNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYV 133
LNG + E LH + LP D+G+Y C A N + S + +V
Sbjct: 549 LNGQPIQYARSTCEAGVAE-------LHIQDALPEDHGTYTCLA---ENALGQVSCSAWV 598
Query: 134 TDVKSASERPSK 145
T + S R S+
Sbjct: 599 TVHEKKSSRKSE 610
>gi|116008192 myosin light chain kinase isoform 1 [Homo sapiens]
Length = 1914
Score = 35.8 bits (81), Expect = 0.045
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 25/132 (18%)
Query: 27 NIHGKESCDVQLYIKRQS-------------EHSILAGDPFELECPVKYCANRPHVTWCK 73
N G+ SC L ++R + + +++ G F L+C V+ P +TW
Sbjct: 491 NAQGQLSCSWTLQVERLAVMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPV-PRITWL- 548
Query: 74 LNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYV 133
LNG + E LH + LP D+G+Y C A N + S + +V
Sbjct: 549 LNGQPIQYARSTCEAGVAE-------LHIQDALPEDHGTYTCLA---ENALGQVSCSAWV 598
Query: 134 TDVKSASERPSK 145
T + S R S+
Sbjct: 599 TVHEKKSSRKSE 610
>gi|4826706 EBV-induced G protein-coupled receptor 2 [Homo sapiens]
Length = 361
Score = 35.0 bits (79), Expect = 0.077
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 141 ERPSKDEMASRPWLLYSLLPLGG-LPLLITT-CFCLFCCLRRHQGKQNELSDTAG 193
E P+ +E S PW+L +G LPL+I C+ CC KQN L++ +G
Sbjct: 183 EYPNFEETKSLPWILLGACFIGYVLPLIIILICYSQICCKLFRTAKQNPLTEKSG 237
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 34.7 bits (78), Expect = 0.10
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 26/126 (20%)
Query: 25 IWNIHGKESCDVQL-------YIKRQSEHSILAGDPFELECPVKYCANRPH--VTW---- 71
I N GK+SC Q+ ++K+ + GD L+C + A P V+W
Sbjct: 7942 IENASGKDSCSAQILILEPPYFVKQLEPVKVSVGDSASLQCQL---AGTPEIGVSWYKGD 7998
Query: 72 CKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTL 131
KL TT K+ R N++ + F V ND+G Y C A + S ST L
Sbjct: 7999 TKLRPTTTYKMHFR-------NNVATLV--FNQVDINDSGEYICKAENSVGEV-SASTFL 8048
Query: 132 YVTDVK 137
V + K
Sbjct: 8049 TVQEQK 8054
Score = 30.4 bits (67), Expect = 1.9
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 27 NIHGKESCDVQL-------YIKRQSEHSILAGDPFELECPVKYCANRP-HVTWCKLNGTT 78
N G SC ++L +I+ ++ ELEC V P VTW K N
Sbjct: 4938 NDAGTASCSIELKVKEPPTFIRELKPVEVVKYSDVELECEVT--GTPPFEVTWLKNNRE- 4994
Query: 79 CVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRC 115
++ + T +S F LH P+D G Y+C
Sbjct: 4995 -IRSSKKYTL---TDRVSVFNLHITKCDPSDTGEYQC 5027
Score = 29.3 bits (64), Expect = 4.2
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 29/132 (21%)
Query: 27 NIHGKESCDVQL-------YIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTC 79
NI GK+SC QL +IK+ I+ D F +Y CK+ G+
Sbjct: 7288 NIAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEF-----TRY--------ECKIGGSPE 7334
Query: 80 VKL----EDRQTSWKEEKNISFF----ILHFEPVLPNDNGSYRCSANFQSNLIESHSTTL 131
+K+ ++ + + +SF +L + D+G Y C A+ + S ST+L
Sbjct: 7335 IKVLWYKDETEIQESSKFRMSFVDSVAVLEMHNLSVEDSGDYTCEAHNAAGSASS-STSL 7393
Query: 132 YVTDVKSASERP 143
V + ++P
Sbjct: 7394 KVKEPPIFRKKP 7405
Score = 28.1 bits (61), Expect = 9.4
Identities = 33/97 (34%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 27 NIHGKESCDVQLYI-------KRQSEHSILAGDPFELECPVKYCANRP-HVTWCKLNGTT 78
N GK SC LYI KR +++SI G P LE + P VTW K NG
Sbjct: 7851 NEAGKASCTTHLYIKAPAKFVKRLNDYSIEKGKPLILE--GTFTGTPPISVTW-KKNGIN 7907
Query: 79 CVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRC 115
V R EK+ IL D G Y C
Sbjct: 7908 -VTPSQRCNITTTEKSA---ILEIPSSTVEDAGQYNC 7940
>gi|116008190 myosin light chain kinase isoform 3B [Homo sapiens]
Length = 1794
Score = 34.3 bits (77), Expect = 0.13
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 47 SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVL 106
+++ G F L+C V+ P +TW LNG + E LH + L
Sbjct: 455 AVIEGQDFVLQCSVRGTPV-PRITWL-LNGQPIQYARSTCEAGVAE-------LHIQDAL 505
Query: 107 PNDNGSYRCSANFQSNLIESHSTTLYVTDVKSASERPSK 145
P D+G+Y C A N + S + +VT + S R S+
Sbjct: 506 PEDHGTYTCLA---ENALGQVSCSAWVTVHEKKSSRKSE 541
>gi|116008188 myosin light chain kinase isoform 2 [Homo sapiens]
Length = 1845
Score = 34.3 bits (77), Expect = 0.13
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
Query: 47 SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVL 106
+++ G F L+C V+ P +TW LNG + E LH + L
Sbjct: 455 AVIEGQDFVLQCSVRGTPV-PRITWL-LNGQPIQYARSTCEAGVAE-------LHIQDAL 505
Query: 107 PNDNGSYRCSANFQSNLIESHSTTLYVTDVKSASERPSK 145
P D+G+Y C A N + S + +VT + S R S+
Sbjct: 506 PEDHGTYTCLA---ENALGQVSCSAWVTVHEKKSSRKSE 541
>gi|139948432 adlican [Homo sapiens]
Length = 2828
Score = 34.3 bits (77), Expect = 0.13
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 43 QSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHF 102
Q + ++L G P +L C VK + P + W +G+ D S + +S L
Sbjct: 486 QRDQTVLEGGPCQLSCNVK-ASESPSIFWVLPDGSILKAPMDDPDS--KFSILSSGWLRI 542
Query: 103 EPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVKSASERPSKDE 147
+ + P+D+G Y+C A + + +Y V+S S +P++ +
Sbjct: 543 KSMEPSDSGLYQCIAQVRDEM----DRMVYRVLVQSPSTQPAEKD 583
>gi|28872814 semaphorin 4G [Homo sapiens]
Length = 843
Score = 33.9 bits (76), Expect = 0.17
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 16/150 (10%)
Query: 47 SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVL 106
S+L GD L C +N W LNG+ + L D Q ++ + L
Sbjct: 578 SVLRGDDVLLPCDQP--SNLARALWL-LNGS--MGLSDGQGGYR----VGVDGLLVTDAQ 628
Query: 107 PNDNGSYRCSA--NFQSNLIESHSTTLYVTDVKSASERPSKD--EMASRPWLLY--SLLP 160
P +G+Y C A N L+ S+S T+ A + P+ ++A LLY ++
Sbjct: 629 PEHSGNYGCYAEENGLRTLLASYSLTVRPATPAPAPKAPATPGAQLAPDVRLLYVLAIAA 688
Query: 161 LGGLPLLITTCFCLFCCLRR-HQGKQNELS 189
LGGL L++ + CLR +G++ + S
Sbjct: 689 LGGLCLILASSLLYVACLREGRRGRRRKYS 718
>gi|110349721 titin isoform novex-3 [Homo sapiens]
Length = 5604
Score = 33.5 bits (75), Expect = 0.22
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 51 GDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDN 110
GD LEC + +P VTW + NG V L+ Q EE N S L+ + V D+
Sbjct: 4173 GDSIILECLISG-EPQPVVTWFQ-NG---VLLKQNQKFQFEEVNCSHQ-LYIKDVNSQDS 4226
Query: 111 GSYRCSANFQSNLIESHS 128
G Y+C A S +ES S
Sbjct: 4227 GKYKCVAENNSGAVESVS 4244
Score = 30.4 bits (67), Expect = 1.9
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 39 YIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFF 98
+IK S+ G +C V+ + RP V W K KL + EE F
Sbjct: 5516 FIKGISDCYAPIGTAAYFQCLVRG-SPRPTVYWYKDG-----KLVQGRRFTVEESGTGFH 5569
Query: 99 ILHFEPVLPNDNGSYRCSANFQSNLIES 126
L ++ +D G YRC A +S + ES
Sbjct: 5570 NLFITSLVKSDEGEYRCVATNKSGMAES 5597
>gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens]
Length = 243
Score = 33.5 bits (75), Expect = 0.22
Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 16/121 (13%)
Query: 93 KNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVKSASERPSKDEMAS-- 150
++ S FIL+ V P D+G Y C L T L V D + +P+K
Sbjct: 94 RDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKR 153
Query: 151 -----RPW---------LLYSLLPLGGLPLLITTCFCLFCCLRRHQGKQNELSDTAGREI 196
RP + LL G L LL++ + C RR + + + G I
Sbjct: 154 VCRLPRPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGI 213
Query: 197 N 197
+
Sbjct: 214 S 214
>gi|19743898 receptor tyrosine kinase-like orphan receptor 2
precursor [Homo sapiens]
Length = 943
Score = 33.1 bits (74), Expect = 0.29
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 125 ESHSTTLYVTDVKSASERPSKDEMASRPWLLYSLLPLGGLPLLITTCFCLFCCLRRH--- 181
++ + + + DV S S R S S+ +LY L+P +PL+I F L C R
Sbjct: 380 QNKNVRMELCDVPSCSPRDS-----SKMGILYILVPSIAIPLVIACLFFLVCMCRNKQKA 434
Query: 182 -----QGKQNELSDTAGREINLVDAHLKSEQTEAS 211
Q +Q S + E+ L++ H +++ E S
Sbjct: 435 SASTPQRRQLMASPSQDMEMPLINQHKQAKLKEIS 469
>gi|148005039 v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene
homolog isoform 2 precursor [Homo sapiens]
Length = 972
Score = 32.7 bits (73), Expect = 0.38
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 43 QSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKE-----EKNISF 97
++ + + G+ F + C +K ++ + TW + N T KL+++ SW E+ +
Sbjct: 218 KASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQT--KLQEKYNSWHHGDFNYERQAT- 274
Query: 98 FILHFEPVLPNDNGSYRCSAN--FQSNLIESHSTTLYVTD 135
L ND+G + C AN F S + +TTL V D
Sbjct: 275 --LTISSARVNDSGVFMCYANNTFGSANV---TTTLEVVD 309
>gi|4557695 v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene
homolog isoform 1 precursor [Homo sapiens]
Length = 976
Score = 32.7 bits (73), Expect = 0.38
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 43 QSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKE-----EKNISF 97
++ + + G+ F + C +K ++ + TW + N T KL+++ SW E+ +
Sbjct: 218 KASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQT--KLQEKYNSWHHGDFNYERQAT- 274
Query: 98 FILHFEPVLPNDNGSYRCSAN--FQSNLIESHSTTLYVTD 135
L ND+G + C AN F S + +TTL V D
Sbjct: 275 --LTISSARVNDSGVFMCYANNTFGSANV---TTTLEVVD 309
>gi|41352061 metalloprotease 1 [Homo sapiens]
Length = 1037
Score = 32.7 bits (73), Expect = 0.38
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 164 LPLLITTCFCLFCCLR--RHQGKQNELSDTAGREINLVDAHLKSEQTEASTRQNSQVLLS 221
+PL + L C L R Q +Q EL T G + H+ + + T + VL S
Sbjct: 615 VPLFCSVLTKLGCGLLDYREQAQQIELK-TGGMSAS---PHVLPDDSHMDTYEQG-VLFS 669
Query: 222 ETGIYDNDPDLCFRMQEGSEVYSNPCLEENKPGIVYASLNHSVIGPNSRLARNVKEAPTE 281
+ N PD+ MQ SE+++NPC EE + V + LA + ++
Sbjct: 670 SLCLDRNLPDM---MQLWSEIFNNPCFEEEEHFKVLVKMT------AQELANGIPDSGHL 720
Query: 282 YASI 285
YASI
Sbjct: 721 YASI 724
>gi|211059429 synaptotagmin II [Homo sapiens]
Length = 419
Score = 32.3 bits (72), Expect = 0.50
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 152 PWLLYSLLPLGGLPLLITTCFCLF--CCLRRHQGKQNE 187
PW L ++ + GL LL+T CFC+ CC ++ + K+ +
Sbjct: 62 PWALIAIAVVAGL-LLLTCCFCICKKCCCKKKKNKKEK 98
>gi|31543670 synaptotagmin II [Homo sapiens]
Length = 419
Score = 32.3 bits (72), Expect = 0.50
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 152 PWLLYSLLPLGGLPLLITTCFCLF--CCLRRHQGKQNE 187
PW L ++ + GL LL+T CFC+ CC ++ + K+ +
Sbjct: 62 PWALIAIAVVAGL-LLLTCCFCICKKCCCKKKKNKKEK 98
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 32.0 bits (71), Expect = 0.65
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 17/80 (21%)
Query: 39 YIKRQSEH-SILAGDPFELECPVKYCANRPHVT--WCKLNGTTCVKLEDRQTSWKEEKNI 95
Y EH S+ AG+ +L+C P +T W ++ + L R T+ E
Sbjct: 3300 YATTVPEHASVQAGETVQLQC---LAHGTPPLTFQWSRVGSS----LPGRATARNE---- 3348
Query: 96 SFFILHFEPVLPNDNGSYRC 115
+LHFE P D+G YRC
Sbjct: 3349 ---LLHFERAAPEDSGRYRC 3365
Score = 29.3 bits (64), Expect = 4.2
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 21/107 (19%)
Query: 30 GKESCDVQLYIK---------RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCV 80
GK QL I+ R S +++ G E EC + +P VTW K+ G
Sbjct: 3473 GKAQASAQLVIQALPSVLINIRTSVQTVVVGHAVEFEC-LALGDPKPQVTWSKVGGHLRP 3531
Query: 81 KLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESH 127
+ S ++ V D G YRC+A + +SH
Sbjct: 3532 GIVQ-----------SGGVVRIAHVELADAGQYRCTATNAAGTTQSH 3567
>gi|88979855 PREDICTED: similar to v-kit Hardy-Zuckerman 4 feline
sarcoma viral oncogene homolog [Homo sapiens]
Length = 208
Score = 32.0 bits (71), Expect = 0.65
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 43 QSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKE-----EKNISF 97
++ + + G+ F + C +K ++ + TW + N T KL+++ SW E+ +
Sbjct: 110 KASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQT--KLQEKYNSWHHGDFNYERQAT- 166
Query: 98 FILHFEPVLPNDNGSYRCSAN 118
L ND+G + C AN
Sbjct: 167 --LTISSARVNDSGVFMCYAN 185
>gi|27262624 ATP-binding cassette, sub-family A , member 5 [Homo
sapiens]
Length = 1642
Score = 32.0 bits (71), Expect = 0.65
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 211 STRQNSQVLLSETGIYDNDPDLCFRMQEGSEVYSNPCLEENKPGIVYASLNHSVIGPNS- 269
ST+ ++ L D D D+ + E+ C EE KP I+ ++L+
Sbjct: 1247 STKSKNRKLPEPPDNEDEDEDVKAERLKVKELMGCQCCEE-KPSIMVSNLHKEYDDKKDF 1305
Query: 270 RLARNVKEAPTEYASICVR 288
L+R VK+ T+Y S CV+
Sbjct: 1306 LLSRKVKKVATKYISFCVK 1324
>gi|27262626 ATP-binding cassette, sub-family A , member 5 [Homo
sapiens]
Length = 1642
Score = 32.0 bits (71), Expect = 0.65
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 211 STRQNSQVLLSETGIYDNDPDLCFRMQEGSEVYSNPCLEENKPGIVYASLNHSVIGPNS- 269
ST+ ++ L D D D+ + E+ C EE KP I+ ++L+
Sbjct: 1247 STKSKNRKLPEPPDNEDEDEDVKAERLKVKELMGCQCCEE-KPSIMVSNLHKEYDDKKDF 1305
Query: 270 RLARNVKEAPTEYASICVR 288
L+R VK+ T+Y S CV+
Sbjct: 1306 LLSRKVKKVATKYISFCVK 1324
>gi|27886631 CD8b antigen isoform 1 precursor [Homo sapiens]
Length = 246
Score = 32.0 bits (71), Expect = 0.65
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 16/108 (14%)
Query: 93 KNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVKSASERPSKDEMAS-- 150
++ S FIL+ V P D+G Y C L T L V D + +P+K
Sbjct: 94 RDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKR 153
Query: 151 -----RPW---------LLYSLLPLGGLPLLITTCFCLFCCLRRHQGK 184
RP + LL G L LL++ + C RR + +
Sbjct: 154 VCRLPRPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRRAR 201
>gi|4826667 CD8b antigen isoform 5 precursor [Homo sapiens]
Length = 210
Score = 32.0 bits (71), Expect = 0.65
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 16/108 (14%)
Query: 93 KNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVKSASERPSKDEMAS-- 150
++ S FIL+ V P D+G Y C L T L V D + +P+K
Sbjct: 94 RDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKR 153
Query: 151 -----RPW---------LLYSLLPLGGLPLLITTCFCLFCCLRRHQGK 184
RP + LL G L LL++ + C RR + +
Sbjct: 154 VCRLPRPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRRAR 201
>gi|27886635 CD8b antigen isoform 3 precursor [Homo sapiens]
Length = 221
Score = 32.0 bits (71), Expect = 0.65
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 16/108 (14%)
Query: 93 KNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVKSASERPSKDEMAS-- 150
++ S FIL+ V P D+G Y C L T L V D + +P+K
Sbjct: 94 RDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKR 153
Query: 151 -----RPW---------LLYSLLPLGGLPLLITTCFCLFCCLRRHQGK 184
RP + LL G L LL++ + C RR + +
Sbjct: 154 VCRLPRPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRRAR 201
>gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Homo
sapiens]
Length = 414
Score = 30.4 bits (67), Expect = 1.9
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 51 GDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDN 110
GD EL C VTW V+++D + FI + DN
Sbjct: 260 GDALELTCEAIGKPQPVMVTW--------VRVDDEMPQHAVLSGPNLFINNLNKT---DN 308
Query: 111 GSYRCSANFQSNLI-ESHST-TLYVTDVKSASE 141
G+YRC A SN++ ++HS LYV D ++ E
Sbjct: 309 GTYRCEA---SNIVGKAHSDYMLYVYDSRAGEE 338
>gi|27894376 cell adhesion molecule with homology to L1CAM precursor
[Homo sapiens]
Length = 1224
Score = 29.6 bits (65), Expect = 3.2
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 43 QSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHF 102
+S +IL G+ LEC + P V W K+ G E ++ K L
Sbjct: 263 ESSITILKGEILLLECFAEGLPT-PQVDWNKIGGDLPKGRETKENYGKT--------LKI 313
Query: 103 EPVLPNDNGSYRCSAN 118
E V D G+YRC+A+
Sbjct: 314 ENVSYQDKGNYRCTAS 329
>gi|27886637 CD8b antigen isoform 4 precursor [Homo sapiens]
Length = 213
Score = 29.6 bits (65), Expect = 3.2
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 93 KNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVKSASERPSK 145
++ S FIL+ V P D+G Y C L T L V D + +P+K
Sbjct: 94 RDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVDFLPTTAQPTK 146
>gi|132814489 low affinity immunoglobulin gamma Fc region receptor
III-B precursor [Homo sapiens]
Length = 233
Score = 29.3 bits (64), Expect = 4.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 83 EDRQTSWKEEKNI------SFFILHFEPVLPNDNGSYRCSANFQS 121
ED T W +N+ S+FI + ND+G YRC N +
Sbjct: 54 EDNSTQWFHNENLISSQASSYFI---DAATVNDSGEYRCQTNLST 95
>gi|10864029 junctional adhesion molecule 2 precursor [Homo sapiens]
Length = 298
Score = 29.3 bits (64), Expect = 4.2
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 47 SILAGDPFELECPVKYCANRPHVTWCKLNGTTCV---KLEDRQTSWKEEKNISFFILHFE 103
S L+G EL C K P TW K +G + +L + T+ N L F
Sbjct: 144 SALSGTVVELRCQDKEGNPAPEYTWFK-DGIRLLENPRLGSQSTNSSYTMNTKTGTLQFN 202
Query: 104 PVLPNDNGSYRCSA 117
V D G Y C A
Sbjct: 203 TVSKLDTGEYSCEA 216
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,761,242
Number of Sequences: 37866
Number of extensions: 522949
Number of successful extensions: 1476
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1417
Number of HSP's gapped (non-prelim): 91
length of query: 289
length of database: 18,247,518
effective HSP length: 101
effective length of query: 188
effective length of database: 14,423,052
effective search space: 2711533776
effective search space used: 2711533776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.