Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SYT2 Sequence: fasta or formatted (419aa) NCBI GI: 211059429
Description:

synaptotagmin II

Referenced in:

ER, Golgi, and the Secretory Pathway
Synapses

Other entries for this name:
alt mRNA [419aa] synaptotagmin II
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         24           2
 C cysteine            2.1          9           3
 D aspartate           5.7         24           4
 E glutamate           8.6         36           3
 F phenylalanine       4.1         17           1
 G glycine             7.9         33           2
 H histidine           1.2          5           1
 I isoleucine          4.8         20           2
 K lysine             12.6         53           4
 L leucine             9.3         39           4
 M methionine          3.1         13           1
 N asparagine          5.0         21           1
 P proline             5.5         23           2
 Q glutamine           3.6         15           1
 R arginine            2.4         10           2
 S serine              3.1         13           1
 T threonine           6.0         25           3
 V valine              6.2         26           3
 W tryptophan          1.0          4           1
 Y tyrosine            2.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptotagmin II 
SYT2                  1.000   synaptotagmin II 
SYT1                  0.753   synaptotagmin I 
SYT1                  0.753   synaptotagmin I 
SYT1                  0.753   synaptotagmin I 
SYT5                  0.550   synaptotagmin V 
SYT6                  0.326   synaptotagmin VI 
SYT8                  0.326   synaptotagmin VIII 
SYT7                  0.324   synaptotagmin VII 
SYT10                 0.314   synaptotagmin X 
SYT3                  0.311   synaptotagmin III 
SYT3                  0.311   synaptotagmin III 
SYT3                  0.311   synaptotagmin III 
SYT9                  0.309   synaptotagmin IX 
SYT11                 0.248   synaptotagmin XI 
SYT4                  0.244   synaptotagmin IV 
SYT17                 0.238   B/K protein 
DOC2B                 0.194   double C2-like domains, beta 
SYT15                 0.180   synaptotagmin XV isoform a 
DOC2A                 0.175   double C2-like domains, alpha 
RPH3A                 0.174   rabphilin 3A homolog isoform 1 
RPH3A                 0.174   rabphilin 3A homolog isoform 2 
SYT12                 0.171   synaptotagmin XII 
SYTL4                 0.146   synaptotagmin-like 4 
SYTL4                 0.146   synaptotagmin-like 4 
SYT13                 0.144   synaptotagmin XIII 
SYT15                 0.144   synaptotagmin XV isoform b 
LOC390213             0.122   PREDICTED: hypothetical protein LOC390213 
SYTL5                 0.119   synaptotagmin-like 5 isoform 1 
SYTL5                 0.119   synaptotagmin-like 5 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press