Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CD8B Sequence: fasta or formatted (210aa) NCBI GI: 4826667
Description:

CD8b antigen isoform 5 precursor

Referenced in:

T cells

Other entries for this name:
alt prot [246aa] CD8b antigen isoform 1 precursor
alt prot [221aa] CD8b antigen isoform 3 precursor
alt prot [213aa] CD8b antigen isoform 4 precursor
alt prot [243aa] CD8b antigen isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         13           2
 C cysteine            2.9          6           2
 D aspartate           2.4          5           1
 E glutamate           4.3          9           2
 F phenylalanine       3.8          8           1
 G glycine             5.2         11           1
 H histidine           2.4          5           2
 I isoleucine          4.8         10           1
 K lysine              6.7         14           2
 L leucine            13.8         29           3
 M methionine          2.9          6           1
 N asparagine          1.9          4           1
 P proline             5.2         11           1
 Q glutamine           5.2         11           2
 R arginine            7.6         16           4
 S serine              7.6         16           2
 T threonine           6.2         13           2
 V valine              7.6         16           2
 W tryptophan          1.4          3           1
 Y tyrosine            1.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD8b antigen isoform 5 precursor 
CD8B                  0.982   CD8b antigen isoform 1 precursor 
CD8B                  0.982   CD8b antigen isoform 2 precursor 
CD8B                  0.982   CD8b antigen isoform 3 precursor 
CD8B                  0.793   CD8b antigen isoform 4 precursor 
LOC100291786          0.043   PREDICTED: similar to hCG2043206 
LOC100291682          0.043   PREDICTED: similar to hCG1686089 
LOC100290992          0.043   PREDICTED: hypothetical protein XP_002347049 
LOC440871             0.040   PREDICTED: similar to hCG2043206 
CD79B                 0.035   CD79B antigen isoform 3 precursor 
CD79B                 0.035   CD79B antigen isoform 1 precursor 
LOC100130811          0.035   PREDICTED: similar to hCG2038921 
LOC100130811          0.035   PREDICTED: similar to hCG2038921 
LOC100290415          0.033   PREDICTED: hypothetical protein XP_002347493 
PILRB                 0.030   paired immunoglobulin-like type 2 receptor beta isof...
PILRB                 0.030   paired immunoglobulin-like type 2 receptor beta isof...
LRRC4C                0.030   netrin-G1 ligand 
LOC647343             0.030   PREDICTED: similar to hCG2039484 
LOC100294049          0.028   PREDICTED: similar to hCG2019710 
LOC100291000          0.028   PREDICTED: hypothetical protein XP_002348043 
SIRPB1                0.028   signal-regulatory protein beta 1 isoform 2 precurso...
LOC100293705          0.025   PREDICTED: similar to hCG2043257 
PTK7                  0.025   PTK7 protein tyrosine kinase 7 isoform d precursor [...
SIRPB1                0.025   signal-regulatory protein beta 1 isoform 3 precurso...
IGSF2                 0.025   immunoglobulin superfamily, member 2 
SIRPB1                0.025   signal-regulatory protein beta 1 isoform 1 precurso...
LOC652494             0.025   PREDICTED: similar to hCG2042717 
LOC100292611          0.025   PREDICTED: similar to pre-B lymphocyte gene 2 [Homo...
LOC100290528          0.025   PREDICTED: hypothetical protein XP_002347495 
CD8A                  0.023   CD8 antigen alpha polypeptide isoform 2 precursor [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press