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Search of human proteins with 145279204
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|145279204 exonuclease 3'-5' domain containing 3 [Homo
sapiens]
(876 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|145279204 exonuclease 3'-5' domain containing 3 [Homo sapiens] 1765 0.0
gi|110735439 Werner syndrome protein [Homo sapiens] 64 8e-10
gi|229577000 ecotropic viral integration site 5-like isoform 1 [... 47 8e-05
gi|21687020 ecotropic viral integration site 5-like isoform 2 [H... 47 8e-05
gi|8922631 exonuclease 3'-5' domain containing 2 [Homo sapiens] 47 1e-04
gi|4505917 exosome component 10 isoform 2 [Homo sapiens] 44 5e-04
gi|50301240 exosome component 10 isoform 1 [Homo sapiens] 44 5e-04
gi|154146199 sal-like 3 [Homo sapiens] 33 0.89
gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens] 33 0.89
gi|106879204 exocyst complex component 3-like [Homo sapiens] 33 0.89
gi|169217059 PREDICTED: hypothetical protein [Homo sapiens] 32 2.0
gi|89060782 PREDICTED: hypothetical protein [Homo sapiens] 32 2.0
gi|51477179 PREDICTED: hypothetical protein [Homo sapiens] 32 2.0
gi|41151527 PREDICTED: hypothetical protein [Homo sapiens] 32 2.6
gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens] 32 2.6
gi|46358366 zinc finger protein 746 [Homo sapiens] 32 2.6
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 32 3.4
gi|54291710 zinc finger protein 835 [Homo sapiens] 32 3.4
gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens] 31 4.4
gi|14249342 internexin neuronal intermediate filament protein, a... 31 5.7
gi|91208420 bassoon protein [Homo sapiens] 31 5.7
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 31 5.7
gi|145580608 WD repeat domain 62 isoform 1 [Homo sapiens] 31 5.7
gi|145580610 WD repeat domain 62 isoform 2 [Homo sapiens] 31 5.7
gi|27544931 zinc finger protein 38 [Homo sapiens] 31 5.7
gi|134142822 zinc finger protein 133 [Homo sapiens] 30 7.5
gi|27545332 zinc finger protein 133 [Homo sapiens] 30 7.5
gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2 ... 30 7.5
gi|17505907 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1 ... 30 7.5
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 30 9.8
>gi|145279204 exonuclease 3'-5' domain containing 3 [Homo sapiens]
Length = 876
Score = 1765 bits (4571), Expect = 0.0
Identities = 876/876 (100%), Positives = 876/876 (100%)
Query: 1 MDPGDPAGDPAAGERHRMGRDPLLLLQALQTLWSTRERKQLREEAWRGFAALDDPLAGLL 60
MDPGDPAGDPAAGERHRMGRDPLLLLQALQTLWSTRERKQLREEAWRGFAALDDPLAGLL
Sbjct: 1 MDPGDPAGDPAAGERHRMGRDPLLLLQALQTLWSTRERKQLREEAWRGFAALDDPLAGLL 60
Query: 61 DMLESCRGQRGEGPSLAAWISHQLQCWLQAQPCPSLAQHSLRLKQLQARAVKVLTESPPS 120
DMLESCRGQRGEGPSLAAWISHQLQCWLQAQPCPSLAQHSLRLKQLQARAVKVLTESPPS
Sbjct: 61 DMLESCRGQRGEGPSLAAWISHQLQCWLQAQPCPSLAQHSLRLKQLQARAVKVLTESPPS 120
Query: 121 LAAPLASIFQLQDADRSCLLAHVHRLHHEGRFREAATLGATLKLQSELGVEKMSIPLLLQ 180
LAAPLASIFQLQDADRSCLLAHVHRLHHEGRFREAATLGATLKLQSELGVEKMSIPLLLQ
Sbjct: 121 LAAPLASIFQLQDADRSCLLAHVHRLHHEGRFREAATLGATLKLQSELGVEKMSIPLLLQ 180
Query: 181 DKVALVERYVAGFPDLQRRLLVLMDSWCQPGFDIKDVARRYPEVTSLSLEKLSPKALSRQ 240
DKVALVERYVAGFPDLQRRLLVLMDSWCQPGFDIKDVARRYPEVTSLSLEKLSPKALSRQ
Sbjct: 181 DKVALVERYVAGFPDLQRRLLVLMDSWCQPGFDIKDVARRYPEVTSLSLEKLSPKALSRQ 240
Query: 241 VLRLQERYGVAPALCPNAAIQQRLAALRHLCHKRFVEKSLSQENWTDHVQGLVGQSPWLQ 300
VLRLQERYGVAPALCPNAAIQQRLAALRHLCHKRFVEKSLSQENWTDHVQGLVGQSPWLQ
Sbjct: 241 VLRLQERYGVAPALCPNAAIQQRLAALRHLCHKRFVEKSLSQENWTDHVQGLVGQSPWLQ 300
Query: 301 EQLSQLLVSHSDPVTAAQCAMELLLPEERLPAAVAVELRRFRLQGRATEADSRLEVKDMK 360
EQLSQLLVSHSDPVTAAQCAMELLLPEERLPAAVAVELRRFRLQGRATEADSRLEVKDMK
Sbjct: 301 EQLSQLLVSHSDPVTAAQCAMELLLPEERLPAAVAVELRRFRLQGRATEADSRLEVKDMK 360
Query: 361 DRYYQLPIPRENVHLLASWEDLTRHEGALLQCHQVVGVDVEWTPVFVAGGRPRPSLLQVA 420
DRYYQLPIPRENVHLLASWEDLTRHEGALLQCHQVVGVDVEWTPVFVAGGRPRPSLLQVA
Sbjct: 361 DRYYQLPIPRENVHLLASWEDLTRHEGALLQCHQVVGVDVEWTPVFVAGGRPRPSLLQVA 420
Query: 421 VEGHVFLLDVLALSQPPTGQGAQAFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALA 480
VEGHVFLLDVLALSQPPTGQGAQAFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALA
Sbjct: 421 VEGHVFLLDVLALSQPPTGQGAQAFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALA 480
Query: 481 HVEKQILGGMDLLLVHRQMRVASVPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWD 540
HVEKQILGGMDLLLVHRQMRVASVPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWD
Sbjct: 481 HVEKQILGGMDLLLVHRQMRVASVPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWD 540
Query: 541 RRPLCEEQVIYAAADAYCLLEVHQALCREPARFHLSEDLAGSRRPRHRERPGARKPPGLQ 600
RRPLCEEQVIYAAADAYCLLEVHQALCREPARFHLSEDLAGSRRPRHRERPGARKPPGLQ
Sbjct: 541 RRPLCEEQVIYAAADAYCLLEVHQALCREPARFHLSEDLAGSRRPRHRERPGARKPPGLQ 600
Query: 601 KASAPAAPRQVPVAVAVSEGAAPQIPARAFRVVCDNMLQGLARSLRCLGVDARMLGNGED 660
KASAPAAPRQVPVAVAVSEGAAPQIPARAFRVVCDNMLQGLARSLRCLGVDARMLGNGED
Sbjct: 601 KASAPAAPRQVPVAVAVSEGAAPQIPARAFRVVCDNMLQGLARSLRCLGVDARMLGNGED 660
Query: 661 HRRAAEVARQEGRIILTSGQPFHKLRAQVGAGRCLSVDCSLKAQQQAKAVLKHFNVRVTH 720
HRRAAEVARQEGRIILTSGQPFHKLRAQVGAGRCLSVDCSLKAQQQAKAVLKHFNVRVTH
Sbjct: 661 HRRAAEVARQEGRIILTSGQPFHKLRAQVGAGRCLSVDCSLKAQQQAKAVLKHFNVRVTH 720
Query: 721 ADIFSRCQACNCDQYLKVSRDMMKQLMWLSSHQEGPRSSGDEATQSQAVQEPGPAPDAAP 780
ADIFSRCQACNCDQYLKVSRDMMKQLMWLSSHQEGPRSSGDEATQSQAVQEPGPAPDAAP
Sbjct: 721 ADIFSRCQACNCDQYLKVSRDMMKQLMWLSSHQEGPRSSGDEATQSQAVQEPGPAPDAAP 780
Query: 781 EGCTYDRPCRWLQMADLRAETPDMLADGTRLQLAGVPVGVLRTPGLRCFYCCTGCGKVFW 840
EGCTYDRPCRWLQMADLRAETPDMLADGTRLQLAGVPVGVLRTPGLRCFYCCTGCGKVFW
Sbjct: 781 EGCTYDRPCRWLQMADLRAETPDMLADGTRLQLAGVPVGVLRTPGLRCFYCCTGCGKVFW 840
Query: 841 DGSHLGRVATHFRDMLESAPSPCEPSPAPSPASSPF 876
DGSHLGRVATHFRDMLESAPSPCEPSPAPSPASSPF
Sbjct: 841 DGSHLGRVATHFRDMLESAPSPCEPSPAPSPASSPF 876
>gi|110735439 Werner syndrome protein [Homo sapiens]
Length = 1432
Score = 63.5 bits (153), Expect = 8e-10
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 28/175 (16%)
Query: 395 VVGVDVEWTPVFVAGGRPRPSLLQVAV-EGHVFLLDVLALSQPPTGQGAQAFSRLVAQLL 453
VVG D+EW P++ G + +L+Q+ V E +L V ++S P G + LL
Sbjct: 78 VVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMSVFPQG---------LKMLL 128
Query: 454 SDPSITKLGYGMVGDLQKLGTSCPALAHVEKQILGGMDLLLVHRQMRVASVPAPAVDRAR 513
+ ++ K G G+ GD KL L + ++ ++L V + +
Sbjct: 129 ENKAVKKAGVGIEGDQWKL------LRDFDIKLKNFVELTDVANKKL----------KCT 172
Query: 514 ELRGLSLLVQQVLGTAL--DKTQQLSNWDRRPLCEEQVIYAAADAYCLLEVHQAL 566
E L+ LV+ +LG L DK+ + SNW + PL E+Q +YAA DAY +++ L
Sbjct: 173 ETWSLNSLVKHLLGKQLLKDKSIRCSNWSKFPLTEDQKLYAATDAYAGFIIYRNL 227
>gi|229577000 ecotropic viral integration site 5-like isoform 1
[Homo sapiens]
Length = 805
Score = 47.0 bits (110), Expect = 8e-05
Identities = 85/342 (24%), Positives = 149/342 (43%), Gaps = 69/342 (20%)
Query: 97 AQHSLRLKQLQARAVKVLTESPPSLAAPLASIFQLQDADRSCLL-----AHVHRLHHEGR 151
A+ + +K+ A + + + L ++I QLQ+ + L +H+ + R
Sbjct: 420 AEENYVIKRELAVVRQQCSSAAEDLQKAQSTIRQLQEQQENPRLTEDFVSHLETELEQSR 479
Query: 152 FREAATLGATLKLQSE-LGVEKMSIPLLLQDKVALVE-----------RYVAGFPDLQRR 199
RE TLGA ++Q + L +EK + L ++ VA ++ + VA +L+ +
Sbjct: 480 LRETETLGALREMQDKVLDMEKRNSSLPDENNVAQLQEELKALKVREGQAVASTRELKLQ 539
Query: 200 LLVLMDSW---CQPGFDIKDVARRYPEVTSLSLEKLSPKALSRQVLRLQERYGVAPALCP 256
L L D+W G K+ R+ L + +L + +S +RL+E A AL
Sbjct: 540 LQELSDTWQAHLARGGRWKESPRK------LVVGELQDELMS---VRLRE----AQALAE 586
Query: 257 NAAIQQRLAAL-------RHLCHKRFVEKSLSQENWTDHVQGLVGQSPWLQEQLSQLLVS 309
++QR+ L R+L ++ E++ QE +Q L Q+ LQ QLS+
Sbjct: 587 GRELRQRVVELETQDHIHRNLLNRVEAERAALQEK----LQYLAAQNKGLQTQLSESRRK 642
Query: 310 HSDPVTAAQC-----AMELLLPEERLPAAVAVELRRF----------RLQGRATEADSRL 354
++ A+C M + L E AAVA +R R+QG+ +DS
Sbjct: 643 QAE----AECKSKEEVMAVRLREADSMAAVAEMRQRIAELEIQREEGRIQGQLNHSDSSQ 698
Query: 355 EVKDMKDRYYQLPIPRENVHLLAS---WEDLTRHEGALLQCH 393
++++KD+ +L + V LL +ED +G L H
Sbjct: 699 YIRELKDQIEEL---KAEVRLLKGPPPFEDPLAFDGLSLARH 737
>gi|21687020 ecotropic viral integration site 5-like isoform 2 [Homo
sapiens]
Length = 794
Score = 47.0 bits (110), Expect = 8e-05
Identities = 85/342 (24%), Positives = 149/342 (43%), Gaps = 69/342 (20%)
Query: 97 AQHSLRLKQLQARAVKVLTESPPSLAAPLASIFQLQDADRSCLL-----AHVHRLHHEGR 151
A+ + +K+ A + + + L ++I QLQ+ + L +H+ + R
Sbjct: 409 AEENYVIKRELAVVRQQCSSAAEDLQKAQSTIRQLQEQQENPRLTEDFVSHLETELEQSR 468
Query: 152 FREAATLGATLKLQSE-LGVEKMSIPLLLQDKVALVE-----------RYVAGFPDLQRR 199
RE TLGA ++Q + L +EK + L ++ VA ++ + VA +L+ +
Sbjct: 469 LRETETLGALREMQDKVLDMEKRNSSLPDENNVAQLQEELKALKVREGQAVASTRELKLQ 528
Query: 200 LLVLMDSW---CQPGFDIKDVARRYPEVTSLSLEKLSPKALSRQVLRLQERYGVAPALCP 256
L L D+W G K+ R+ L + +L + +S +RL+E A AL
Sbjct: 529 LQELSDTWQAHLARGGRWKESPRK------LVVGELQDELMS---VRLRE----AQALAE 575
Query: 257 NAAIQQRLAAL-------RHLCHKRFVEKSLSQENWTDHVQGLVGQSPWLQEQLSQLLVS 309
++QR+ L R+L ++ E++ QE +Q L Q+ LQ QLS+
Sbjct: 576 GRELRQRVVELETQDHIHRNLLNRVEAERAALQEK----LQYLAAQNKGLQTQLSESRRK 631
Query: 310 HSDPVTAAQC-----AMELLLPEERLPAAVAVELRRF----------RLQGRATEADSRL 354
++ A+C M + L E AAVA +R R+QG+ +DS
Sbjct: 632 QAE----AECKSKEEVMAVRLREADSMAAVAEMRQRIAELEIQREEGRIQGQLNHSDSSQ 687
Query: 355 EVKDMKDRYYQLPIPRENVHLLAS---WEDLTRHEGALLQCH 393
++++KD+ +L + V LL +ED +G L H
Sbjct: 688 YIRELKDQIEEL---KAEVRLLKGPPPFEDPLAFDGLSLARH 726
>gi|8922631 exonuclease 3'-5' domain containing 2 [Homo sapiens]
Length = 496
Score = 46.6 bits (109), Expect = 1e-04
Identities = 46/151 (30%), Positives = 65/151 (43%), Gaps = 24/151 (15%)
Query: 441 GAQAFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAHVEKQILGGMDLLLVHRQMR 500
G + R + +L+D +I K+G G D KL L + G +DL + + R
Sbjct: 19 GGKTLPRTLLDILADGTILKVGVGCSEDASKL------LQDYGLVVRGCLDLRYLAMRQR 72
Query: 501 VASVPAPAVDRARELRGLSL--LVQQVLGTALDKTQQL--SNWDRRPLCEEQVIYAAADA 556
+ GLSL L + VL LDK+ L SNWD L E+QVIYAA DA
Sbjct: 73 NNLL----------CNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQVIYAARDA 122
Query: 557 YCLLEVHQALCREPARFHLSEDLAGSRRPRH 587
++ AL + S + G + H
Sbjct: 123 ----QISVALFLHLLGYPFSRNSPGEKNDDH 149
>gi|4505917 exosome component 10 isoform 2 [Homo sapiens]
Length = 860
Score = 44.3 bits (103), Expect = 5e-04
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 32/201 (15%)
Query: 367 PIPRENVHLLASWEDLTRHEGALLQCHQVVGVDVEWTPVFVAGGRPRPSLLQVAVEGHVF 426
PI H ++S ++L LL C Q VD+E G L+Q++ F
Sbjct: 282 PIEETPCHFISSLDELVELNEKLLNC-QEFAVDLEHHSYRSFLGLT--CLMQISTRTEDF 338
Query: 427 LLDVLALSQPPTGQGAQAFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAHVEKQI 486
++D L L ++ ++ + L+DP+I K+ +G D++ L +K
Sbjct: 339 IIDTLEL---------RSDMYILNESLTDPAIVKVFHGADSDIEWL----------QKDF 379
Query: 487 -LGGMDLLLVHRQMRVASVPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWDRRPLC 545
L +++ H+ R+ ++ ++D L++ +K QL++W RPL
Sbjct: 380 GLYVVNMFDTHQAARLLNLGRHSLDH---------LLKLYCNVDSNKQYQLADWRIRPLP 430
Query: 546 EEQVIYAAADAYCLLEVHQAL 566
EE + YA D + LL ++ +
Sbjct: 431 EEMLSYARDDTHYLLYIYDKM 451
>gi|50301240 exosome component 10 isoform 1 [Homo sapiens]
Length = 885
Score = 44.3 bits (103), Expect = 5e-04
Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 32/201 (15%)
Query: 367 PIPRENVHLLASWEDLTRHEGALLQCHQVVGVDVEWTPVFVAGGRPRPSLLQVAVEGHVF 426
PI H ++S ++L LL C Q VD+E G L+Q++ F
Sbjct: 282 PIEETPCHFISSLDELVELNEKLLNC-QEFAVDLEHHSYRSFLGLT--CLMQISTRTEDF 338
Query: 427 LLDVLALSQPPTGQGAQAFSRLVAQLLSDPSITKLGYGMVGDLQKLGTSCPALAHVEKQI 486
++D L L ++ ++ + L+DP+I K+ +G D++ L +K
Sbjct: 339 IIDTLEL---------RSDMYILNESLTDPAIVKVFHGADSDIEWL----------QKDF 379
Query: 487 -LGGMDLLLVHRQMRVASVPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWDRRPLC 545
L +++ H+ R+ ++ ++D L++ +K QL++W RPL
Sbjct: 380 GLYVVNMFDTHQAARLLNLGRHSLDH---------LLKLYCNVDSNKQYQLADWRIRPLP 430
Query: 546 EEQVIYAAADAYCLLEVHQAL 566
EE + YA D + LL ++ +
Sbjct: 431 EEMLSYARDDTHYLLYIYDKM 451
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 33.5 bits (75), Expect = 0.89
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 584 RPRHRERPGARKPPGLQKASAPAAPRQVPVAVAVSEGAAPQIPA 627
+P R GA P G + SAPAAP P A + APQ A
Sbjct: 290 QPLSRPESGASTPGGPAEPSAPAAPSAAPAPAAPAPAPAPQSAA 333
>gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]
Length = 3639
Score = 33.5 bits (75), Expect = 0.89
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 298 WLQEQLSQL-LVSHSDPVTAAQCAMELLLPEERLPAAVAVELRRFRLQGRATEADSRLEV 356
WL+E+ S L S AA+ + + ER+ A A ELRR QGRA A + L
Sbjct: 725 WLRERRSSLERASCGQDQAAAETLLRRHVRLERVLRAFAAELRRLEEQGRAASARASLFT 784
Query: 357 KDMKDRYYQLPIPRENVHLLASWEDLTRHEG 387
+ L P E++ W + + H G
Sbjct: 785 VNS-----ALSPPGESLRNPGPWSEASCHPG 810
>gi|106879204 exocyst complex component 3-like [Homo sapiens]
Length = 746
Score = 33.5 bits (75), Expect = 0.89
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 27 QALQTLWSTRERKQLREEAWRGFAALDDPLAGLLDMLESCRGQRGEGPSLAA 78
Q L+ S RE +QLRE+ W L+ P+ LD+L GQ E + AA
Sbjct: 158 QFLEAYVSLRELEQLREDTWAPLGGLELPVFQGLDLLFEALGQAVEAAAGAA 209
>gi|169217059 PREDICTED: hypothetical protein [Homo sapiens]
Length = 272
Score = 32.3 bits (72), Expect = 2.0
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 853 RDMLESAPSPCEPSPAPSP 871
RD+L SAP+P P PAPSP
Sbjct: 73 RDLLPSAPTPYPPGPAPSP 91
>gi|89060782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 272
Score = 32.3 bits (72), Expect = 2.0
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 853 RDMLESAPSPCEPSPAPSP 871
RD+L SAP+P P PAPSP
Sbjct: 73 RDLLPSAPTPYPPGPAPSP 91
>gi|51477179 PREDICTED: hypothetical protein [Homo sapiens]
Length = 272
Score = 32.3 bits (72), Expect = 2.0
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 853 RDMLESAPSPCEPSPAPSP 871
RD+L SAP+P P PAPSP
Sbjct: 73 RDLLPSAPTPYPPGPAPSP 91
>gi|41151527 PREDICTED: hypothetical protein [Homo sapiens]
Length = 272
Score = 32.0 bits (71), Expect = 2.6
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 853 RDMLESAPSPCEPSPAPSP 871
RD+L SAP+P P PAPSP
Sbjct: 73 RDLLPSAPTPDPPGPAPSP 91
>gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens]
Length = 814
Score = 32.0 bits (71), Expect = 2.6
Identities = 31/119 (26%), Positives = 38/119 (31%), Gaps = 25/119 (21%)
Query: 766 SQAVQEPGPAPDAAPEGCTYDRPCRWLQMADLRAETPDMLADGTRLQLAGVPVGVLRTPG 825
SQ Q G +P+ CT CR L+ + P P G PG
Sbjct: 139 SQNGQTYGNGETFSPDACT---TCRCLEGTITCNQKP-------------CPRGPCPEPG 182
Query: 826 LRCFYCCTGC---------GKVFWDGSHLGRVATHFRDMLESAPSPCEPSPAPSPASSP 875
C +C GC G F S+ T R + C PSP P P P
Sbjct: 183 ACCPHCKPGCDYEGQLYEEGVTFLSSSNPCLQCTCLRSRVRCMALKCPPSPCPEPVLRP 241
>gi|46358366 zinc finger protein 746 [Homo sapiens]
Length = 644
Score = 32.0 bits (71), Expect = 2.6
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 830 YCCTGCGKVFWDGSHLGRVATHFRDMLESAPSPCEPSPAPSPASSP 875
+ CT CGK F HL + H R+ A +P P P+P + P
Sbjct: 566 FTCTVCGKSFIRKDHLRK---HQRNHAAGAKTPARGQPLPTPPAPP 608
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 31.6 bits (70), Expect = 3.4
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 21/76 (27%)
Query: 814 AGVPVGVLRTPGLRCFYCCTGCGKVFWDGSHLGRVATHFR---DMLESAP---------S 861
A P G L P C YC +G G + HFR +L AP +
Sbjct: 842 AAPPPGALGLPAAACPYCPP-------NGPVRGDLLEHFRLAHGLLLGAPLAGPGVEART 894
Query: 862 PCE--PSPAPSPASSP 875
P + PSPAP+PA+SP
Sbjct: 895 PADRGPSPAPAPAASP 910
>gi|54291710 zinc finger protein 835 [Homo sapiens]
Length = 559
Score = 31.6 bits (70), Expect = 3.4
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 830 YCCTGCGKVFWDGSHLGRVATHFRDMLESAPSPCEPSPAPSPASSP 875
Y C+GCGK F S L R H R +S+ C PAP+P S+P
Sbjct: 496 YECSGCGKAFSFSSALIR---HQRTHADSSGRLC---PAPTPDSTP 535
>gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens]
Length = 1505
Score = 31.2 bits (69), Expect = 4.4
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 559 LLEVHQALCREPARFHLSE-DLAGSRRPRHRERPGARKPPGLQKASAPAAPRQVPVAVAV 617
LLE +++L E A +S DL+GS R + +++P +R+P L PR +
Sbjct: 385 LLEKNRSLQSENAALRISNSDLSGSARRKGKDQPESRRPGSLPAPPPSQLPRNPGEQASN 444
Query: 618 SEGAAPQIPA 627
+ G PA
Sbjct: 445 TNGTHQFSPA 454
>gi|14249342 internexin neuronal intermediate filament protein,
alpha [Homo sapiens]
Length = 499
Score = 30.8 bits (68), Expect = 5.7
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 25/134 (18%)
Query: 140 LAHVHRLHHEGRFREAATLGATLKLQSELGVEKMSIPLLLQDKVALVERYVAGFPDLQRR 199
LA V ++H E E A L ATL+ S+ E + + + D + + A + L +
Sbjct: 224 LAFVRQVHDE----EVAELLATLQASSQAAAE-VDVTVAKPDLTSALREIRAQYESLAAK 278
Query: 200 LLVLMDSWCQPGF-DIKDVARRYPEVTSLSLEKL-------------------SPKALSR 239
L + W + F ++ + A R E S E++ + ++L R
Sbjct: 279 NLQSAEEWYKSKFANLNEQAARSTEAIRASREEIHEYRRQLQARTIEIEGLRGANESLER 338
Query: 240 QVLRLQERYGVAPA 253
Q+L L+ER+ A
Sbjct: 339 QILELEERHSAEVA 352
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 30.8 bits (68), Expect = 5.7
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 591 PGARKPPGLQKASAPAAPRQVPVAVAVSEGAAPQIP 626
PGA KPP SAPA Q+P A A A P +P
Sbjct: 31 PGAGKPP-----SAPAGGGQLPAAGAARSTAVPPVP 61
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 30.8 bits (68), Expect = 5.7
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 577 EDLAGSRRPRHRERPGARK------PPGLQKASAPAAPRQVPVAVAVSEGAAPQIPA 627
+DL G P+H +PG RK +A++PA PR+ P A + G PA
Sbjct: 614 DDLQGLPEPQHA-KPGPRKLAERGPQDSGDRAASPAGPRKSPQEAAAAPGTREPCPA 669
>gi|145580608 WD repeat domain 62 isoform 1 [Homo sapiens]
Length = 1523
Score = 30.8 bits (68), Expect = 5.7
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 733 DQYLKVSRDMMKQLMWLSSHQEGPRSSGDEATQSQAVQEPGPAPDAAPEGCT 784
D YL+VS D K S ++ S D A+ P P PD AP T
Sbjct: 973 DSYLRVSSDSPKDQ---SPPEDSGESEADLECSFAAIHSPAPPPDPAPRFAT 1021
>gi|145580610 WD repeat domain 62 isoform 2 [Homo sapiens]
Length = 1518
Score = 30.8 bits (68), Expect = 5.7
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 733 DQYLKVSRDMMKQLMWLSSHQEGPRSSGDEATQSQAVQEPGPAPDAAPEGCT 784
D YL+VS D K S ++ S D A+ P P PD AP T
Sbjct: 973 DSYLRVSSDSPKDQ---SPPEDSGESEADLECSFAAIHSPAPPPDPAPRFAT 1021
>gi|27544931 zinc finger protein 38 [Homo sapiens]
Length = 473
Score = 30.8 bits (68), Expect = 5.7
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 830 YCCTGCGKVFWDGSHLGRVATHFRDMLESAPSPCE 864
Y CT CGK F SH + H+R L P C+
Sbjct: 305 YVCTKCGKAF---SHSSNLTLHYRTHLVDRPYDCK 336
>gi|134142822 zinc finger protein 133 [Homo sapiens]
Length = 653
Score = 30.4 bits (67), Expect = 7.5
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 830 YCCTGCGKVFWDGSHLGR----VATHFRDMLESAPSPCEPSPAPS 870
Y C CG+ F SHL R + H R ++ P PC P+ S
Sbjct: 605 YVCKTCGRGFSLKSHLSRHRKTTSVHHRLPVQPDPEPCAGQPSDS 649
>gi|27545332 zinc finger protein 133 [Homo sapiens]
Length = 653
Score = 30.4 bits (67), Expect = 7.5
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 830 YCCTGCGKVFWDGSHLGR----VATHFRDMLESAPSPCEPSPAPS 870
Y C CG+ F SHL R + H R ++ P PC P+ S
Sbjct: 605 YVCKTCGRGFSLKSHLSRHRKTTSVHHRLPVQPDPEPCAGQPSDS 649
>gi|20336298 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 2
[Homo sapiens]
Length = 585
Score = 30.4 bits (67), Expect = 7.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 156 ATLGATLKLQSELGVEKMSIPLLLQDKVALV 186
+T+ LK+ S V+K SIP+LL+ + ALV
Sbjct: 243 STINTVLKMSSMTSVQKQSIPVLLEGRDALV 273
>gi|17505907 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 isoform 1
[Homo sapiens]
Length = 851
Score = 30.4 bits (67), Expect = 7.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 156 ATLGATLKLQSELGVEKMSIPLLLQDKVALV 186
+T+ LK+ S V+K SIP+LL+ + ALV
Sbjct: 243 STINTVLKMSSMTSVQKQSIPVLLEGRDALV 273
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 30.0 bits (66), Expect = 9.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 565 ALCREPARFHLSEDLAGSRR-PRHRERPGARKPPGLQKASAPAAPRQ 610
A CR P + G +R P +ERP P L +SAP P +
Sbjct: 83 AKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTE 129
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,870,550
Number of Sequences: 37866
Number of extensions: 1820783
Number of successful extensions: 10074
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 10011
Number of HSP's gapped (non-prelim): 82
length of query: 876
length of database: 18,247,518
effective HSP length: 111
effective length of query: 765
effective length of database: 14,044,392
effective search space: 10743959880
effective search space used: 10743959880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.