Guide to the Human Genome
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Name: SLC46A2 Sequence: fasta or formatted (475aa) NCBI GI: 223029454
Description:

solute carrier family 46, member 2

Referenced in:

Stomach, Small Intestine, and Colon
Solute Carrier Families
T cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         39           3
 C cysteine            1.5          7           1
 D aspartate           2.9         14           1
 E glutamate           2.1         10           1
 F phenylalanine       5.1         24           1
 G glycine             9.5         45           2
 H histidine           1.7          8           1
 I isoleucine          5.9         28           2
 K lysine              3.4         16           1
 L leucine            14.1         67           3
 M methionine          3.2         15           1
 N asparagine          1.3          6           1
 P proline             4.8         23           2
 Q glutamine           3.2         15           3
 R arginine            3.8         18           2
 S serine             10.5         50           2
 T threonine           4.6         22           2
 V valine              9.1         43           2
 W tryptophan          1.1          5           1
 Y tyrosine            4.2         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 46, member 2 
SLC46A3               0.149   solute carrier family 46, member 3 isoform a 
SLC46A3               0.149   solute carrier family 46, member 3 isoform b 
SLC46A1               0.103   proton-coupled folate transporter 
MFSD6                 0.010   major facilitator superfamily domain containing 6 [...
TMBIM1                0.009   transmembrane BAX inhibitor motif containing 1 [Homo...
SLC22A3               0.009   solute carrier family 22 member 3 
SLC2A2                0.009   solute carrier family 2 (facilitated glucose transpor...
SPNS3                 0.008   spinster homolog 3 
BBC3                  0.008   BCL2 binding component 3 isoform 2 
PCDH1                 0.006   protocadherin 1 isoform 2 precursor 
XKR8                  0.006   XK, Kell blood group complex subunit-related family,...
TAS2R13               0.006   taste receptor, type 2, member 13 
GSG1L                 0.006   GSG1-like isoform 1 
NIPAL3                0.004   NIPA-like domain containing 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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