Search of human proteins with 143770802

Search of human proteins with 143770802

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|143770802 mitochondrial ribosomal protein L1 precursor [Homo
sapiens]
         (325 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|143770802 mitochondrial ribosomal protein L1 precursor [Homo ...   642   0.0  
gi|149192843 hypothetical protein LOC54627 [Homo sapiens]              34   0.16 
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap...    34   0.20 
gi|47578107 delangin isoform B [Homo sapiens]                          31   1.3  
gi|47578105 delangin isoform A [Homo sapiens]                          31   1.3  
gi|224586931 protein tyrosine phosphatase, non-receptor type 22 ...    30   2.2  
gi|224586929 protein tyrosine phosphatase, non-receptor type 22 ...    30   2.2  
gi|194440673 THAP domain containing 5 isoform 2 [Homo sapiens]         30   3.8  
gi|194440668 THAP domain containing 5 isoform 1 [Homo sapiens]         30   3.8  
gi|163310763 serine/threonine kinase 32A isoform 1 [Homo sapiens]      30   3.8  
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ...    30   3.8  
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho...    29   5.0  
gi|46389552 endosulfine alpha isoform 2 [Homo sapiens]                 29   6.5  
gi|46389550 endosulfine alpha isoform 1 [Homo sapiens]                 29   6.5  
gi|145275208 myosin IIIA [Homo sapiens]                                29   6.5  
gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo...    29   6.5  
gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo...    29   6.5  
gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens]     29   6.5  
gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens]     29   6.5  
gi|224028284 ring finger protein 184 isoform 2 [Homo sapiens]          28   8.5  
gi|38570121 ring finger protein 184 isoform 1 [Homo sapiens]           28   8.5  
gi|165932370 FAT tumor suppressor homolog 4 [Homo sapiens]             28   8.5  
gi|96975038 coiled-coil domain containing 100 [Homo sapiens]           28   8.5  
gi|62632750 ATPase, class VI, type 11B [Homo sapiens]                  28   8.5  
gi|28626521 zinc finger, NFX1-type containing 1 [Homo sapiens]         28   8.5  

>gi|143770802 mitochondrial ribosomal protein L1 precursor [Homo
           sapiens]
          Length = 325

 Score =  642 bits (1655), Expect = 0.0
 Identities = 325/325 (100%), Positives = 325/325 (100%)

Query: 1   MAAAVRCMGRALIHHQRHSLSKMVYQTSLCSCSVNIRVPNRHFAAATKSAKKTKKGAKEK 60
           MAAAVRCMGRALIHHQRHSLSKMVYQTSLCSCSVNIRVPNRHFAAATKSAKKTKKGAKEK
Sbjct: 1   MAAAVRCMGRALIHHQRHSLSKMVYQTSLCSCSVNIRVPNRHFAAATKSAKKTKKGAKEK 60

Query: 61  TPDEKKDEIEKIKAYPYMEGEPEDDVYLKRLYPRQIYEVEKAVHLLKKFQILDFTSPKQS 120
           TPDEKKDEIEKIKAYPYMEGEPEDDVYLKRLYPRQIYEVEKAVHLLKKFQILDFTSPKQS
Sbjct: 61  TPDEKKDEIEKIKAYPYMEGEPEDDVYLKRLYPRQIYEVEKAVHLLKKFQILDFTSPKQS 120

Query: 121 VYLDLTLDMALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGG 180
           VYLDLTLDMALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGG
Sbjct: 121 VYLDLTLDMALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGG 180

Query: 181 TSLIQKIWDDEIVADFYVAVPEIMPELNRLRKKLNKKYPKLSRNSIGRDIPKMLELFKNG 240
           TSLIQKIWDDEIVADFYVAVPEIMPELNRLRKKLNKKYPKLSRNSIGRDIPKMLELFKNG
Sbjct: 181 TSLIQKIWDDEIVADFYVAVPEIMPELNRLRKKLNKKYPKLSRNSIGRDIPKMLELFKNG 240

Query: 241 HEIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCRHRPLNLGPFVVRAFLRSSTS 300
           HEIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCRHRPLNLGPFVVRAFLRSSTS
Sbjct: 241 HEIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCRHRPLNLGPFVVRAFLRSSTS 300

Query: 301 EGLLLKIDPLLPKEVKNEESEKEDA 325
           EGLLLKIDPLLPKEVKNEESEKEDA
Sbjct: 301 EGLLLKIDPLLPKEVKNEESEKEDA 325


>gi|149192843 hypothetical protein LOC54627 [Homo sapiens]
          Length = 1047

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 20/67 (29%), Positives = 32/67 (47%)

Query: 116 SPKQSVYLDLTLDMALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEVKIAEENGA 175
           +PK S Y   + D  + KKKN    +S+LS P+   S ++    F  + ++ K  EE  +
Sbjct: 876 NPKHSQYTSKSSDTGVSKKKNSSDRSSILSPPFSAGSPVHSYRKFHISKTQDKSLEEASS 935

Query: 176 AFAGGTS 182
             A   S
Sbjct: 936 ISASDLS 942


>gi|111120318 NK6 transcription factor related, locus 1 [Homo
           sapiens]
          Length = 367

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 21  SKMVYQTSLCSCSVNIRVPNRHFAAATKSAKKTKKGAKEKTPDEKKDEIEKIKAYPYMEG 80
           +++ Y   +    V +   NR         K  KK A E    +KK + E  +     E 
Sbjct: 267 ARLAYSLGMTESQVKVWFQNRR-------TKWRKKHAAEMATAKKKQDSETERLKGASEN 319

Query: 81  EPEDDVYLKRLYPRQIYEVEKAVHLLKK 108
           E EDD Y K L P    + EK   LLKK
Sbjct: 320 EEEDDDYNKPLDPNS--DDEKITQLLKK 345


>gi|47578107 delangin isoform B [Homo sapiens]
          Length = 2697

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 10/117 (8%)

Query: 143 VLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVPE 202
           ++S+    A  ++  A  T+++  +K  EE         S++Q     E +     + PE
Sbjct: 540 MVSIDLHQAGRVDSQASITQDSDSIKKPEEIKQCNDAPVSVLQ-----EDIVGSLKSTPE 594

Query: 203 IMPELNRLRKKLNKKYPKLSRNSIGRDIPKMLELFKNGHEIKVDEERENFLQTKIAT 259
             PE  +      K  P+LS++ + +   ++ E   N + +   +  EN L+TK+ T
Sbjct: 595 NHPETPK-----KKSDPELSKSEMKQSESRLAESKPNENRLVETKSSENKLETKVET 646


>gi|47578105 delangin isoform A [Homo sapiens]
          Length = 2804

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 10/117 (8%)

Query: 143 VLSLPYPFASEINKVAVFTENASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVPE 202
           ++S+    A  ++  A  T+++  +K  EE         S++Q     E +     + PE
Sbjct: 540 MVSIDLHQAGRVDSQASITQDSDSIKKPEEIKQCNDAPVSVLQ-----EDIVGSLKSTPE 594

Query: 203 IMPELNRLRKKLNKKYPKLSRNSIGRDIPKMLELFKNGHEIKVDEERENFLQTKIAT 259
             PE  +      K  P+LS++ + +   ++ E   N + +   +  EN L+TK+ T
Sbjct: 595 NHPETPK-----KKSDPELSKSEMKQSESRLAESKPNENRLVETKSSENKLETKVET 646


>gi|224586931 protein tyrosine phosphatase, non-receptor type 22
           (lymphoid) isoform 2 [Homo sapiens]
          Length = 691

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 8   MGRALIHHQRHSLSKMVYQTSLCSCSVNIRVPNRHFAAATKSAKKTKKGAKEKTPDEKKD 67
           +G  L  HQ   L  ++++   CS S  +    R+F +     + TK    E     +  
Sbjct: 405 VGEPLQKHQSLDLGSLLFEG--CSNSKPVNAAGRYFNSKVPITR-TKSTPFELIQQRETK 461

Query: 68  EIEKIKAYPYMEGEPEDDVYLK 89
           E++  + + Y+E +P D  +++
Sbjct: 462 EVDSKENFSYLESQPHDSCFVE 483


>gi|224586929 protein tyrosine phosphatase, non-receptor type 22
           (lymphoid) isoform 1 [Homo sapiens]
          Length = 807

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 8   MGRALIHHQRHSLSKMVYQTSLCSCSVNIRVPNRHFAAATKSAKKTKKGAKEKTPDEKKD 67
           +G  L  HQ   L  ++++   CS S  +    R+F +     + TK    E     +  
Sbjct: 405 VGEPLQKHQSLDLGSLLFEG--CSNSKPVNAAGRYFNSKVPITR-TKSTPFELIQQRETK 461

Query: 68  EIEKIKAYPYMEGEPEDDVYLK 89
           E++  + + Y+E +P D  +++
Sbjct: 462 EVDSKENFSYLESQPHDSCFVE 483


>gi|194440673 THAP domain containing 5 isoform 2 [Homo sapiens]
          Length = 353

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 11/126 (8%)

Query: 160 FTENASEVKIAEENGAAFAGGTSLIQKI-WDDEIVADFYVAVPEIMPELNRL---RKKLN 215
           FT N+ E+K A+EN   F+     ++++  + E V   +V      P +N     +K+  
Sbjct: 195 FTSNSMEIKSAQENPFLFSTINQTVEELNTNKESVIAIFVPAENSKPSVNSFISAQKETT 254

Query: 216 KKYPKLSRNSIGRDIPKMLELFKNGHE-IKVDEERENF------LQTKIATLDMSSDQIA 268
           +       +S+ +D+    E+ +  H   + D  +E+       L +KI  L++   Q  
Sbjct: 255 EMEDTDIEDSLYKDVDYGTEVLQIEHSYCRQDINKEHLWQKVSKLHSKITLLELKEQQTL 314

Query: 269 ANLQAV 274
             L+++
Sbjct: 315 GRLKSL 320


>gi|194440668 THAP domain containing 5 isoform 1 [Homo sapiens]
          Length = 395

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 11/126 (8%)

Query: 160 FTENASEVKIAEENGAAFAGGTSLIQKI-WDDEIVADFYVAVPEIMPELNRL---RKKLN 215
           FT N+ E+K A+EN   F+     ++++  + E V   +V      P +N     +K+  
Sbjct: 237 FTSNSMEIKSAQENPFLFSTINQTVEELNTNKESVIAIFVPAENSKPSVNSFISAQKETT 296

Query: 216 KKYPKLSRNSIGRDIPKMLELFKNGHE-IKVDEERENF------LQTKIATLDMSSDQIA 268
           +       +S+ +D+    E+ +  H   + D  +E+       L +KI  L++   Q  
Sbjct: 297 EMEDTDIEDSLYKDVDYGTEVLQIEHSYCRQDINKEHLWQKVSKLHSKITLLELKEQQTL 356

Query: 269 ANLQAV 274
             L+++
Sbjct: 357 GRLKSL 362


>gi|163310763 serine/threonine kinase 32A isoform 1 [Homo sapiens]
          Length = 396

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 59  EKTPDEKKDEIEKIKAYPYMEGEPEDDVYLKRLYP 93
           E  PD++  ++  ++ +PYM     D V+ KRL P
Sbjct: 262 EPNPDQRFSQLSDVQNFPYMNDINWDAVFQKRLIP 296


>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
            transmembrane signal), 1 [Homo sapiens]
          Length = 3259

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 15/180 (8%)

Query: 108  KFQILDFTSPKQSVYLDLTLDMALGKKKNVEPFTSVLSLPYPFASEINKVAVFTENASEV 167
            K Q+ +  + K  + L ++   +   KK+ E F            +INK  +  E+   V
Sbjct: 1308 KAQLKEIEAEKVELELKVSSTTSELTKKSEEVFQ--------LQEQINKQGLEIESLKTV 1359

Query: 168  KIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVPEIMPELNRLRKKLNKKYPKLSRNSIG 227
                E  A      SL QK+   ++       + E+ P+L+ L+K ++KK   +S  S G
Sbjct: 1360 SHEAEVHAE-----SLQQKLESSQLQIAGLEHLRELQPKLDELQKLISKKEEDVSYLS-G 1413

Query: 228  RDIPKMLELFKNGHEIKVDEERENFLQTKIATLDMSSDQIAANLQAVINEVCRHRPLNLG 287
            +   K   L K   EI   E+    L T++       D+    LQ  + E+ + +P  +G
Sbjct: 1414 QLSEKEAALTKIQTEIIEQEDLIKALHTQLEMQAKEHDERIKQLQVELCEM-KQKPEEIG 1472


>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
           sapiens]
          Length = 929

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 11/100 (11%)

Query: 38  VPNRHFAAATKSAKKTKKGAKEKTPDEKKDEIEKIKAYPYMEGEPEDDVYLKRLYPRQIY 97
           +P + F    K  +K KK  K+K   +KK E EK K     E E  +         R+  
Sbjct: 685 LPEKLFEEKEKVKEKEKK--KDKKEKKKKKEKEKEKKEKEREKEKRE---------REKR 733

Query: 98  EVEKAVHLLKKFQILDFTSPKQSVYLDLTLDMALGKKKNV 137
           E EK  H  +K ++         V   LTL +  G+ K V
Sbjct: 734 EKEKEKHKHEKIKVEPVALAPSPVIPRLTLRVGAGQDKIV 773


>gi|46389552 endosulfine alpha isoform 2 [Homo sapiens]
          Length = 133

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 49  SAKKTKKGAKEKTPDEKKDEIEKIKAYPYMEGEPEDDVYLKRLYPRQIYEVEKAVHLLKK 108
           S K+ ++   E+T +EK+D  EK    P    E  ++  LK  YP    +   +  L+K+
Sbjct: 2   SQKQEEENPAEETGEEKQDTQEKEGILP----ERAEEAKLKAKYPSLGQKPGGSDFLMKR 57

Query: 109 FQILDFTSPKQSVYL 123
            Q  D+ S   SV L
Sbjct: 58  LQKGDYKSLHWSVLL 72


>gi|46389550 endosulfine alpha isoform 1 [Homo sapiens]
          Length = 137

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 49  SAKKTKKGAKEKTPDEKKDEIEKIKAYPYMEGEPEDDVYLKRLYPRQIYEVEKAVHLLKK 108
           S K+ ++   E+T +EK+D  EK    P    E  ++  LK  YP    +   +  L+K+
Sbjct: 2   SQKQEEENPAEETGEEKQDTQEKEGILP----ERAEEAKLKAKYPSLGQKPGGSDFLMKR 57

Query: 109 FQILDFTSPKQSVYL 123
            Q  D+ S   SV L
Sbjct: 58  LQKGDYKSLHWSVLL 72


>gi|145275208 myosin IIIA [Homo sapiens]
          Length = 1616

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 16/113 (14%)

Query: 155  NKVAVFTENASEVKIAEENGAAFAGGTSLIQ------KIWDDEIVADFYVAVPEIMPELN 208
            NK +V     S  K  EE   A      + Q       ++++E+  +FY+  PE+ P+  
Sbjct: 1157 NKGSVSVVKTSTFKPEEETTNAVESNNRVYQTPKKMNNVYEEEVKQEFYLVGPEVSPK-- 1214

Query: 209  RLRKKLNKKYPKLSRNSIGRDIPKMLELFKNGHEIKVDEERENFLQTKIATLD 261
                   K    L  NS  R + K   + ++ ++ +  EER N  ++K A L+
Sbjct: 1215 ------QKSVKDLEENSNLRKVEKEEAMIQSYYQ-RYTEER-NCEESKAAYLE 1259


>gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo
           sapiens]
          Length = 1272

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 47  TKSAKKTKKGAKEKTPDEKKDEIEKIKAYP---YMEGEPEDDVYLKRLYPRQIYEVEKA 102
           TK AK++K+  +  +PD+ + E+E ++       +EG  E +   K+L   Q  E E+A
Sbjct: 500 TKEAKESKENKEVSSPDDLELELENLEINDDTLELEGGDEAEDLTKKLLDEQEQEDEEA 558


>gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo
           sapiens]
          Length = 1272

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 47  TKSAKKTKKGAKEKTPDEKKDEIEKIKAYP---YMEGEPEDDVYLKRLYPRQIYEVEKA 102
           TK AK++K+  +  +PD+ + E+E ++       +EG  E +   K+L   Q  E E+A
Sbjct: 500 TKEAKESKENKEVSSPDDLELELENLEINDDTLELEGGDEAEDLTKKLLDEQEQEDEEA 558


>gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens]
          Length = 1226

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 26/208 (12%)

Query: 59  EKTPDEKKDEIEKIKAYPYMEGEPEDDVYLKRLYPRQIYEVEKAVHLLKKFQILDFTSPK 118
           E  P+E+++ ++++  +    G P +   +       ++++ + VH L  F  ++  +  
Sbjct: 303 EPFPEERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVW 362

Query: 119 QSVYLDL---TLDMALGK------KKNV---EPFTSVLSLPYPFA---SEINKVAVFTEN 163
           + VY DL    L+ A G       KK +   E +    ++ +  A     +NK     EN
Sbjct: 363 KQVYQDLGIPVLNSAAGYNVKCAYKKYLYGFEEYCRSANIEFQMALPEKVVNKQCKECEN 422

Query: 164 ASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVPEIMPELNRLRKKLNKKYPKLSR 223
             E+K+ EEN            +I + ++  +  +   E  P  + + +K N K    S+
Sbjct: 423 VKEIKVKEENET----------EIKEIKMEEERNIIPREEKPIEDEIERKENIKPSLGSK 472

Query: 224 NSIGRDIPKMLELFKNGHEIKVDEEREN 251
            ++   IP   +  K  + IK  E+ EN
Sbjct: 473 KNLLESIPTHSDQEKEVN-IKKPEDNEN 499


>gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens]
          Length = 1312

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 26/208 (12%)

Query: 59  EKTPDEKKDEIEKIKAYPYMEGEPEDDVYLKRLYPRQIYEVEKAVHLLKKFQILDFTSPK 118
           E  P+E+++ ++++  +    G P +   +       ++++ + VH L  F  ++  +  
Sbjct: 303 EPFPEERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVW 362

Query: 119 QSVYLDL---TLDMALGK------KKNV---EPFTSVLSLPYPFA---SEINKVAVFTEN 163
           + VY DL    L+ A G       KK +   E +    ++ +  A     +NK     EN
Sbjct: 363 KQVYQDLGIPVLNSAAGYNVKCAYKKYLYGFEEYCRSANIEFQMALPEKVVNKQCKECEN 422

Query: 164 ASEVKIAEENGAAFAGGTSLIQKIWDDEIVADFYVAVPEIMPELNRLRKKLNKKYPKLSR 223
             E+K+ EEN            +I + ++  +  +   E  P  + + +K N K    S+
Sbjct: 423 VKEIKVKEENET----------EIKEIKMEEERNIIPREEKPIEDEIERKENIKPSLGSK 472

Query: 224 NSIGRDIPKMLELFKNGHEIKVDEEREN 251
            ++   IP   +  K  + IK  E+ EN
Sbjct: 473 KNLLESIPTHSDQEKEVN-IKKPEDNEN 499


>gi|224028284 ring finger protein 184 isoform 2 [Homo sapiens]
          Length = 503

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 42  HFAAATKSAKKTKKGAKEKTPDEKKDEIEKIKAYPYMEGEPEDDVYLK 89
           H   + KS  KTK G  +K    K    EKI ++ +M G P   VY K
Sbjct: 338 HEHGSKKSHSKTKPGILKKDKAVK----EKIPSHHFMPGSPTKTVYKK 381


>gi|38570121 ring finger protein 184 isoform 1 [Homo sapiens]
          Length = 577

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 42  HFAAATKSAKKTKKGAKEKTPDEKKDEIEKIKAYPYMEGEPEDDVYLK 89
           H   + KS  KTK G  +K    K    EKI ++ +M G P   VY K
Sbjct: 412 HEHGSKKSHSKTKPGILKKDKAVK----EKIPSHHFMPGSPTKTVYKK 455


>gi|165932370 FAT tumor suppressor homolog 4 [Homo sapiens]
          Length = 4981

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 17/87 (19%)

Query: 51   KKTKKGAKEKTPDEKK---------DEIEKIKAY-------PYMEGEPEDDVYLKRLYPR 94
            KK K   +EK P EKK         D+ + I  Y          EG P+ D+ ++R  P 
Sbjct: 4532 KKAKNPKEEKKPKEKKKKGSENVAFDDPDNIPPYGDDMTVRKQPEGNPKPDI-IERENPY 4590

Query: 95   QIYEVEKAVHLLKKFQILDFTSPKQSV 121
             IY+     H  +        SP+Q +
Sbjct: 4591 LIYDETDIPHNSETIPSAPLASPEQEI 4617


>gi|96975038 coiled-coil domain containing 100 [Homo sapiens]
          Length = 986

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 202 EIMPELNRLRKKLNKKYPKLSRNSIG-RDIP--KMLELFKNGHEIKVDEERENFLQTKIA 258
           +I  ELNRLR++  K+Y   +  + G +D P   +LE   + +  ++ EER+  ++T + 
Sbjct: 902 DIRNELNRLRQQEQKQYQDSTEIASGKKDGPHGSVLEEGLDDYLTRLIEERDTLMRTGVY 961

Query: 259 TLDMSSDQIAANLQAVINEV 278
                 D+I + L   I E+
Sbjct: 962 N---HEDRIISELDRQIREI 978


>gi|62632750 ATPase, class VI, type 11B [Homo sapiens]
          Length = 1177

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 16/66 (24%), Positives = 28/66 (42%)

Query: 6   RCMGRALIHHQRHSLSKMVYQTSLCSCSVNIRVPNRHFAAATKSAKKTKKGAKEKTPDEK 65
           R MGR +I  Q   + + +   SL      ++     F  A  +  +TK     K+  +K
Sbjct: 219 RFMGRMIITQQMEEIVRPLGPESLLLRGARLKNTKEIFGVAVYTGMETKMALNYKSKSQK 278

Query: 66  KDEIEK 71
           +  +EK
Sbjct: 279 RSAVEK 284


>gi|28626521 zinc finger, NFX1-type containing 1 [Homo sapiens]
          Length = 1918

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 52   KTKKGAKEKTPDEKKDEIEKIKAYPYMEGEPEDDVYLKRLYPR--------QIYEVEKAV 103
            +T++  K+K     KDE+ K+      E    +DV+   L  R        Q+Y+ +   
Sbjct: 888  QTQRNQKKKMKKRVKDELRKLNTMTAAEANEIEDVWQLDLSSRWQLYRLWLQLYQADTRR 947

Query: 104  HLLKKFQILDFTSPKQSVYLDLTLDMALGKKKNVEPFTSVLSLPY-PFASEINKVAVFTE 162
             +L  ++    TS ++   L L  D+ + K   V   T+  +  Y     ++    V  E
Sbjct: 948  KIL-SYERQYRTSAERMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVE 1006

Query: 163  NASEV 167
             A+EV
Sbjct: 1007 EAAEV 1011


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,440,209
Number of Sequences: 37866
Number of extensions: 479802
Number of successful extensions: 1809
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1797
Number of HSP's gapped (non-prelim): 30
length of query: 325
length of database: 18,247,518
effective HSP length: 102
effective length of query: 223
effective length of database: 14,385,186
effective search space: 3207896478
effective search space used: 3207896478
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.