Guide to the Human Genome
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Name: MRPL1 Sequence: fasta or formatted (325aa) NCBI GI: 143770802
Description:

mitochondrial ribosomal protein L1 precursor

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         27           3
 C cysteine            1.2          4           1
 D aspartate           4.9         16           2
 E glutamate           9.2         30           2
 F phenylalanine       3.7         12           1
 G glycine             3.4         11           2
 H histidine           2.2          7           2
 I isoleucine          5.8         19           1
 K lysine             11.1         36           3
 L leucine             9.8         32           3
 M methionine          2.5          8           1
 N asparagine          4.6         15           1
 P proline             5.2         17           1
 Q glutamine           2.8          9           1
 R arginine            4.9         16           1
 S serine              6.5         21           2
 T threonine           3.7         12           1
 V valine              6.8         22           2
 W tryptophan          0.3          1           1
 Y tyrosine            3.1         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial ribosomal protein L1 precursor 
KIAA1383              0.015   hypothetical protein LOC54627 
NKX6-1                0.015   NK6 transcription factor related, locus 1 
NIPBL                 0.010   delangin isoform B 
NIPBL                 0.010   delangin isoform A 
PTPN22                0.008   protein tyrosine phosphatase, non-receptor type 22 ...
PTPN22                0.008   protein tyrosine phosphatase, non-receptor type 22 ...
THAP5                 0.008   THAP domain containing 5 isoform 2 
THAP5                 0.008   THAP domain containing 5 isoform 1 
STK32A                0.008   serine/threonine kinase 32A isoform 1 
GOLGB1                0.008   golgi autoantigen, golgin subfamily b, macrogolgin ...
TAF3                  0.006   RNA polymerase II transcription factor TAFII140 [Ho...
ENSA                  0.006   endosulfine alpha isoform 2 
ENSA                  0.006   endosulfine alpha isoform 1 
MYO3A                 0.006   myosin IIIA 
UPF2                  0.006   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.006   UPF2 regulator of nonsense transcripts homolog [Homo...
ARID4B                0.006   AT rich interactive domain 4B isoform 2 
ARID4B                0.006   AT rich interactive domain 4B isoform 1 
MSL2                  0.005   ring finger protein 184 isoform 2 
MSL2                  0.005   ring finger protein 184 isoform 1 
FAT4                  0.005   FAT tumor suppressor homolog 4 
CEP120                0.005   coiled-coil domain containing 100 
ATP11B                0.005   ATPase, class VI, type 11B 
ZNFX1                 0.005   zinc finger, NFX1-type containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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