Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 109689711
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109689711 gasdermin-like isoform 2 [Homo sapiens]
(394 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|109689711 gasdermin-like isoform 2 [Homo sapiens] 771 0.0
gi|109689703 gasdermin-like isoform 1 [Homo sapiens] 763 0.0
gi|150456463 gasdermin 1 [Homo sapiens] 131 1e-30
gi|83320070 gasdermin D [Homo sapiens] 85 1e-16
gi|13899221 melanoma-derived leucine zipper, extra-nuclear facto... 49 8e-06
gi|4758154 deafness, autosomal dominant 5 protein isoform a [Hom... 42 7e-04
gi|188536092 deafness, autosomal dominant 5 protein isoform a [H... 42 7e-04
gi|118498362 kinectin 1 isoform b [Homo sapiens] 39 0.006
gi|111607457 deafness, autosomal recessive 59 [Homo sapiens] 38 0.014
gi|118498356 kinectin 1 isoform a [Homo sapiens] 38 0.018
gi|118498368 kinectin 1 isoform c [Homo sapiens] 38 0.018
gi|33620775 kinectin 1 isoform a [Homo sapiens] 38 0.018
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 38 0.018
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 35 0.090
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 35 0.090
gi|156071420 hypothetical protein LOC728912 [Homo sapiens] 34 0.20
gi|119709825 neuroblastoma breakpoint family, member 11-like [Ho... 34 0.20
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 34 0.20
gi|39753961 IQ motif containing GTPase activating protein 3 [Hom... 34 0.26
gi|126362971 serine/threonine kinase 10 [Homo sapiens] 33 0.34
gi|45356151 non-SMC condensin II complex, subunit D3 [Homo sapiens] 33 0.34
gi|24308219 synaptotagmin IV [Homo sapiens] 33 0.34
gi|63054866 leucine rich repeat containing 16A [Homo sapiens] 33 0.45
gi|148746195 trichohyalin [Homo sapiens] 33 0.45
gi|224586823 coiled-coil domain containing 110 isoform b [Homo s... 33 0.58
gi|22749515 coiled-coil domain containing 110 isoform a [Homo sa... 33 0.58
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 33 0.58
gi|29171753 PTPRF interacting protein alpha 1 isoform a [Homo sa... 33 0.58
gi|4505983 PTPRF interacting protein alpha 1 isoform b [Homo sap... 33 0.58
gi|110347568 centrosomal protein 152kDa [Homo sapiens] 33 0.58
>gi|109689711 gasdermin-like isoform 2 [Homo sapiens]
Length = 394
Score = 771 bits (1992), Expect = 0.0
Identities = 394/394 (100%), Positives = 394/394 (100%)
Query: 1 MFSVFEEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKRTFFGCRHYTTGLTLMD 60
MFSVFEEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKRTFFGCRHYTTGLTLMD
Sbjct: 1 MFSVFEEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKRTFFGCRHYTTGLTLMD 60
Query: 61 ILDTDGDKWLDELDSGLQGQKAEFQILDNVDSTGELIVRLPKEITISGSFQGFHHQKIKI 120
ILDTDGDKWLDELDSGLQGQKAEFQILDNVDSTGELIVRLPKEITISGSFQGFHHQKIKI
Sbjct: 61 ILDTDGDKWLDELDSGLQGQKAEFQILDNVDSTGELIVRLPKEITISGSFQGFHHQKIKI 120
Query: 121 SENRISQQYLATLENRKLKRELPFSFRSINTRENLYLVTETLETVKEETLKSDRQYKFWS 180
SENRISQQYLATLENRKLKRELPFSFRSINTRENLYLVTETLETVKEETLKSDRQYKFWS
Sbjct: 121 SENRISQQYLATLENRKLKRELPFSFRSINTRENLYLVTETLETVKEETLKSDRQYKFWS 180
Query: 181 QISQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETMRKSLGSEDSRNMKEKLEDME 240
QISQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETMRKSLGSEDSRNMKEKLEDME
Sbjct: 181 QISQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETMRKSLGSEDSRNMKEKLEDME 240
Query: 241 SVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQRVSEVLISGELHMEDPDKPLLSSLFNA 300
SVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQRVSEVLISGELHMEDPDKPLLSSLFNA
Sbjct: 241 SVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQRVSEVLISGELHMEDPDKPLLSSLFNA 300
Query: 301 AGVLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLLKDQVKSVMEQNWDELASSP 360
AGVLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLLKDQVKSVMEQNWDELASSP
Sbjct: 301 AGVLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLLKDQVKSVMEQNWDELASSP 360
Query: 361 PDMDYDPEARILCALYVVVSILLELAEGPTSVSS 394
PDMDYDPEARILCALYVVVSILLELAEGPTSVSS
Sbjct: 361 PDMDYDPEARILCALYVVVSILLELAEGPTSVSS 394
>gi|109689703 gasdermin-like isoform 1 [Homo sapiens]
Length = 403
Score = 763 bits (1969), Expect = 0.0
Identities = 393/403 (97%), Positives = 394/403 (97%), Gaps = 9/403 (2%)
Query: 1 MFSVFEEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKRTFFGCRHYTTGLTLMD 60
MFSVFEEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKRTFFGCRHYTTGLTLMD
Sbjct: 1 MFSVFEEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKRTFFGCRHYTTGLTLMD 60
Query: 61 ILDTDGDKWLDELDSGLQGQKAEFQILDNVDSTGELIVRLPKEITISGSFQGFHHQKIKI 120
ILDTDGDKWLDELDSGLQGQKAEFQILDNVDSTGELIVRLPKEITISGSFQGFHHQKIKI
Sbjct: 61 ILDTDGDKWLDELDSGLQGQKAEFQILDNVDSTGELIVRLPKEITISGSFQGFHHQKIKI 120
Query: 121 SENRISQQYLATLENRKLKRELPFSFRSINTRENLYLVTETLETVKEETLKSDRQYKFWS 180
SENRISQQYLATLENRKLKRELPFSFRSINTRENLYLVTETLETVKEETLKSDRQYKFWS
Sbjct: 121 SENRISQQYLATLENRKLKRELPFSFRSINTRENLYLVTETLETVKEETLKSDRQYKFWS 180
Query: 181 QISQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETMR---------KSLGSEDSRN 231
QISQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETM+ KSLGSEDSRN
Sbjct: 181 QISQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETMKKDGASSCLGKSLGSEDSRN 240
Query: 232 MKEKLEDMESVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQRVSEVLISGELHMEDPDK 291
MKEKLEDMESVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQRVSEVLISGELHMEDPDK
Sbjct: 241 MKEKLEDMESVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQRVSEVLISGELHMEDPDK 300
Query: 292 PLLSSLFNAAGVLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLLKDQVKSVMEQ 351
PLLSSLFNAAGVLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLLKDQVKSVMEQ
Sbjct: 301 PLLSSLFNAAGVLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLLKDQVKSVMEQ 360
Query: 352 NWDELASSPPDMDYDPEARILCALYVVVSILLELAEGPTSVSS 394
NWDELASSPPDMDYDPEARILCALYVVVSILLELAEGPTSVSS
Sbjct: 361 NWDELASSPPDMDYDPEARILCALYVVVSILLELAEGPTSVSS 403
>gi|150456463 gasdermin 1 [Homo sapiens]
Length = 445
Score = 131 bits (329), Expect = 1e-30
Identities = 129/462 (27%), Positives = 214/462 (46%), Gaps = 97/462 (20%)
Query: 3 SVFEEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKRT---FFGCRHYTTGLTLM 59
++FE +TR + ++++ GD+ + SL+D RF F LV KR F+G R+ T TL+
Sbjct: 2 TMFENVTRALARQLNPRGDLTPLDSLIDFKRFHPFCLVLRKRKSTLFWGARYVRTDYTLL 61
Query: 60 DILDTDGDKWLDELDSGLQGQKAEFQILDNVDSTGELIVRLPKEITISGSFQGFHHQKIK 119
D+L+ G D D+G G K + +D+ E V +PK + + G+ + ++
Sbjct: 62 DVLEP-GSSPSDPTDTGNFGFK------NMLDTRVEGDVDVPKTVKVKGTAGLSQNSTLE 114
Query: 120 ISENRISQQYLATLENRKLKRELPFSFRSINTRENLYLVTETLETVKEETLKSDRQYK-- 177
+ ++ + L T++ RKL + PF + ENLY+V E +ETV+E TL+ + +
Sbjct: 115 VQTLSVAPKALETVQERKLAADHPFLKEMQDQGENLYVVMEVVETVQEVTLERAGKAEAC 174
Query: 178 ----FWSQIS-QGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKE-------------- 218
F++ + QG +++K VTIP VL++RV+QL+ K+
Sbjct: 175 FSLPFFAPLGLQGSINHK----EAVTIPKGCVLAFRVRQLMVKGKDEWDIPHICNDNMQT 230
Query: 219 --------------TMRKSLGS--EDSRNMKEKLEDMESVLKDLTEEKRKDVLNSLAKCL 262
+G E R +KE+++ ++ L+ + +L+SL+K L
Sbjct: 231 FPPGEKSGEEKVILIQASDVGDVHEGFRTLKEEVQRETQQVEKLSRVGQSSLLSSLSKLL 290
Query: 263 GKEDIRQDLEQRVSEVLISG-ELHMEDPDKPLLSSLFNAAGVLVEARAKAILDFLDALLE 321
GK+ QDLE + L G E+ +E K +L L + AIL F+ AL E
Sbjct: 291 GKKKELQDLELALEGALDKGHEVTLEALPKDVL---------LSKEAVGAILYFVGALTE 341
Query: 322 LSEEQQ-FVAEALEKGTLPLLKDQVKSVMEQNW--------------------------- 353
LSE QQ + +++EK LP+ V+S MEQN+
Sbjct: 342 LSEAQQKLLVKSMEKKILPVQLKLVESTMEQNFLLDKEGVFPLQPELLSSLGDEELTLTE 401
Query: 354 -------DELASSPPDMDYDPEA-RILCALYVVVSILLELAE 387
E+ S P +DP+ LCALY +S+L +L +
Sbjct: 402 ALVGLSGLEVQRSGPQYMWDPDTLPRLCALYAGLSLLQQLTK 443
>gi|83320070 gasdermin D [Homo sapiens]
Length = 484
Score = 84.7 bits (208), Expect = 1e-16
Identities = 120/494 (24%), Positives = 206/494 (41%), Gaps = 116/494 (23%)
Query: 1 MFSVFEEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKRT---FFGCRHYTTGLT 57
M S FE + R VV+E+D GG+ I V SL + F+ + LV K + F+ R+ L+
Sbjct: 1 MGSAFERVVRRVVQELDHGGEFIPVTSLQSSTGFQPYCLVVRKPSSSWFWKPRYKCVNLS 60
Query: 58 LMDILDTDGDKWLDELDSGLQGQKAEFQILDNVDS--TGELIVRLPKEITISGSFQGFHH 115
+ DIL+ D + ++ G F D +D G + + P + I+G
Sbjct: 61 IKDILEPDAAE--PDVQRG-----RSFHFYDAMDGQIQGSVELAAPGQAKIAGGAAVSDS 113
Query: 116 QKIKISENRIS---QQYLATLENRKLKRELPFSFRSINTR-ENLYLVTETLETVKEETLK 171
++ +S + L R L++ + + +R +N+Y+VTE L+T KE +
Sbjct: 114 SSTSMNVYSLSVDPNTWQTLLHERHLRQPEHKVLQQLRSRGDNVYVVTEVLQTQKEVEVT 173
Query: 172 SDRQYKFWSQIS-----------QGHLSYKHKGQREVTIPPNRVLSYRVKQLV------- 213
+ + + S QGHLS K + VTIP L++RV QLV
Sbjct: 174 RTHKREGSGRFSLPGATCLQGEGQGHLSQK----KTVTIPSGSTLAFRVAQLVIDSDLDV 229
Query: 214 --FPNKE---------------------------TMRKSLG-------------SEDSRN 231
FP+K+ +M + L +ED +
Sbjct: 230 LLFPDKKQRTFQPPATGHKRSTSEGAWPQLPSGLSMMRCLHNFLTDGVPAEGAFTEDFQG 289
Query: 232 MKEKLEDMESVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQRVSEVLISGELH-MEDPD 290
++ ++E + L+ L E + +L L L + + LE+ + + G + ++ P
Sbjct: 290 LRAEVETISKELELLDRELCQLLLEGLEGVLRDQLALRALEEALEQGQSLGPVEPLDGPA 349
Query: 291 KPLLSSLFNAAGVLVEARAKAILDFLDALLELSEEQ-QFVAEALEKGTLPLLKDQVKSVM 349
+L L ++G+LV A ++ L AL LSE Q + +AEALE TL + V S++
Sbjct: 350 GAVLECLVLSSGMLVPELAIPVVYLLGALTMLSETQHKLLAEALESQTLLGPLELVGSLL 409
Query: 350 EQN--WD-------------------------------ELASSPPDMDYDPEAR-ILCAL 375
EQ+ W EL P + ++P+A+ +CAL
Sbjct: 410 EQSAPWQERSTMSLPPGLLGNSWGEGAPAWVLLDECGLELGEDTPHVCWEPQAQGRMCAL 469
Query: 376 YVVVSILLELAEGP 389
Y +++L L++ P
Sbjct: 470 YASLALLSGLSQEP 483
>gi|13899221 melanoma-derived leucine zipper, extra-nuclear factor
[Homo sapiens]
Length = 508
Score = 48.9 bits (115), Expect = 8e-06
Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 22/256 (8%)
Query: 1 MFSVFEEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKR----TFFGCRHYT-TG 55
M S+ E I++ +VKE+ + D+ V+ L+ A + R F ++ +K+ +F+ Y
Sbjct: 1 MPSMLERISKNLVKEIGSK-DLTPVKYLLSATKLRQFVILRKKKDSRSSFWEQSDYVPVE 59
Query: 56 LTLMDILDTDGDKWLDELDSGLQGQKAEFQILDNVDSTGELIVRLPKEITISGSFQGFHH 115
+L DIL+ L++ + G F + ++ V + E+++SG H
Sbjct: 60 FSLNDILEPSSSV----LETVVTGP-FHFSDIMIQKHKADMGVNVGIEVSVSGEASVDHG 114
Query: 116 QKIKISENRISQQYLATLENRKLKRELPFSFRSINTR-ENLYLVTETLETVKEETLKSDR 174
++ I L + RKL P + R +NLY+VTE +E + L
Sbjct: 115 CSLEFQIVTIPSPNLEDFQKRKLLDPEPSFLKECRRRGDNLYVVTEAVELINNTVLYDSS 174
Query: 175 QYKFWSQISQGHLSYKHKGQRE--------VTIPPNRVLSYRVKQLVFPNKETMRKSLGS 226
+I+ K +GQ E +T+ V++Y+ KQLV K +
Sbjct: 175 SVNILGKIALWITYGKGQGQGESLRVKKKALTLQKGMVMAYKRKQLVIKEKAILISD--D 232
Query: 227 EDSRNMKEKLEDMESV 242
++ R +++ E E V
Sbjct: 233 DEQRTFQDEYEISEMV 248
>gi|4758154 deafness, autosomal dominant 5 protein isoform a [Homo
sapiens]
Length = 496
Score = 42.4 bits (98), Expect = 7e-04
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Query: 4 VFEEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKRTFFGC----RHYTTGLTLM 59
+F + TR ++E+DA GD+IAV +L D+D+ + LV +K+ F+ C ++ LTL
Sbjct: 1 MFAKATRNFLREVDADGDLIAVSNLNDSDKLQLLSLVTKKKRFW-CWQRPKYQFLSLTLG 59
Query: 60 DILDTD 65
D+L D
Sbjct: 60 DVLIED 65
>gi|188536092 deafness, autosomal dominant 5 protein isoform a
[Homo sapiens]
Length = 496
Score = 42.4 bits (98), Expect = 7e-04
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Query: 4 VFEEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKRTFFGC----RHYTTGLTLM 59
+F + TR ++E+DA GD+IAV +L D+D+ + LV +K+ F+ C ++ LTL
Sbjct: 1 MFAKATRNFLREVDADGDLIAVSNLNDSDKLQLLSLVTKKKRFW-CWQRPKYQFLSLTLG 59
Query: 60 DILDTD 65
D+L D
Sbjct: 60 DVLIED 65
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 39.3 bits (90), Expect = 0.006
Identities = 37/154 (24%), Positives = 83/154 (53%), Gaps = 17/154 (11%)
Query: 216 NKE-TMRKSLGS--EDSRNMKEKLEDMESVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLE 272
NKE T++ S+ S ++ +N+ + E+ + +K + EEK KD+ N+ K L +D++++ E
Sbjct: 826 NKEKTVQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANT-GKWL--QDLQEENE 882
Query: 273 QRVSEVLISGELHMEDPDKPLLSSLFNAAGVLVEARAKAILDFLDALL-----ELSEEQQ 327
+ V + ++++ +S F ++++ + L L+A+L +LS + Q
Sbjct: 883 SLKAHVQEVAQHNLKEASS---ASQFEELEIVLKEKENE-LKRLEAMLKERESDLSSKTQ 938
Query: 328 FVAEALEKGTLPLLKDQVKSVMEQNWDELASSPP 361
+ + ++ L K Q++ + +QN+ + +S PP
Sbjct: 939 LLQDVQDEN--KLFKSQIEQLKQQNYQQASSFPP 970
Score = 28.9 bits (63), Expect = 8.4
Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Query: 162 LETVKEETLKSDRQYKFWSQISQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETMR 221
L VKE+ + + K Q++Q ++ K + +T +R+ + + VF NK +
Sbjct: 341 LAAVKEDAAATKDRCK---QLTQEMMTEKERSNVVITRMKDRIGTLEKEHNVFQNKIHVS 397
Query: 222 KSLGSEDSRNMKEKLEDMESVLKDLTEEK---RKDVLNSLAKCLGKED-----IRQDLEQ 273
+ ++ E ME+ + L +E R V N+ + K+ +RQD +
Sbjct: 398 YQETQQMQMKFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDYAR 457
Query: 274 RVSEVL-ISGELHMEDPDK 291
V+E+ +G+L E+ K
Sbjct: 458 LVNELTEKTGKLQQEEVQK 476
>gi|111607457 deafness, autosomal recessive 59 [Homo sapiens]
Length = 352
Score = 38.1 bits (87), Expect = 0.014
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 23/147 (15%)
Query: 4 VFEEITRIVVKEMDAGGDMIAVRSLVDADRFRCFHLVGEKRTFFGCRHY---TTGLTLMD 60
+F T+ VK++ GG ++ V SL +AD+++ LV +K+ F Y +T TL D
Sbjct: 1 MFAAATKSFVKQVGDGGRLVPVPSLSEADKYQPLSLVVKKKRCFLFPRYKFTSTPFTLKD 60
Query: 61 ILDTDGD-----------KWLDELDSGLQGQKAEFQILD---NVDSTGELIVR------L 100
IL D + + DE D L G++ + D NV + + V+
Sbjct: 61 ILLGDREISAGISSYQLLNYEDESDVSLYGRRGNHIVNDVGINVAGSDSIAVKASFGIVT 120
Query: 101 PKEITISGSFQGFHHQKIKISENRISQ 127
E+ +S + +KI + I Q
Sbjct: 121 KHEVEVSTLLKEITTRKINFDHSLIRQ 147
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 37.7 bits (86), Expect = 0.018
Identities = 31/140 (22%), Positives = 74/140 (52%), Gaps = 14/140 (10%)
Query: 227 EDSRNMKEKLEDMESVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQRVSEVLISGELHM 286
++ +N+ + E+ + +K + EEK KD+ N+ K L +D++++ E + V + ++
Sbjct: 863 QELQNLLKGKEEQMNTMKAVLEEKEKDLANT-GKWL--QDLQEENESLKAHVQEVAQHNL 919
Query: 287 EDPDKPLLSSLFNAAGVLVEARAKAILDFLDALL-----ELSEEQQFVAEALEKGTLPLL 341
++ +S F ++++ + L L+A+L +LS + Q + + ++ L
Sbjct: 920 KEASS---ASQFEELEIVLKEKENE-LKRLEAMLKERESDLSSKTQLLQDVQDEN--KLF 973
Query: 342 KDQVKSVMEQNWDELASSPP 361
K Q++ + +QN+ + +S PP
Sbjct: 974 KSQIEQLKQQNYQQASSFPP 993
Score = 28.9 bits (63), Expect = 8.4
Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Query: 162 LETVKEETLKSDRQYKFWSQISQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETMR 221
L VKE+ + + K Q++Q ++ K + +T +R+ + + VF NK +
Sbjct: 341 LAAVKEDAAATKDRCK---QLTQEMMTEKERSNVVITRMKDRIGTLEKEHNVFQNKIHVS 397
Query: 222 KSLGSEDSRNMKEKLEDMESVLKDLTEEK---RKDVLNSLAKCLGKED-----IRQDLEQ 273
+ ++ E ME+ + L +E R V N+ + K+ +RQD +
Sbjct: 398 YQETQQMQMKFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDYAR 457
Query: 274 RVSEVL-ISGELHMEDPDK 291
V+E+ +G+L E+ K
Sbjct: 458 LVNELTEKTGKLQQEEVQK 476
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 37.7 bits (86), Expect = 0.018
Identities = 31/140 (22%), Positives = 74/140 (52%), Gaps = 14/140 (10%)
Query: 227 EDSRNMKEKLEDMESVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQRVSEVLISGELHM 286
++ +N+ + E+ + +K + EEK KD+ N+ K L +D++++ E + V + ++
Sbjct: 863 QELQNLLKGKEEQMNTMKAVLEEKEKDLANT-GKWL--QDLQEENESLKAHVQEVAQHNL 919
Query: 287 EDPDKPLLSSLFNAAGVLVEARAKAILDFLDALL-----ELSEEQQFVAEALEKGTLPLL 341
++ +S F ++++ + L L+A+L +LS + Q + + ++ L
Sbjct: 920 KEASS---ASQFEELEIVLKEKENE-LKRLEAMLKERESDLSSKTQLLQDVQDEN--KLF 973
Query: 342 KDQVKSVMEQNWDELASSPP 361
K Q++ + +QN+ + +S PP
Sbjct: 974 KSQIEQLKQQNYQQASSFPP 993
Score = 28.9 bits (63), Expect = 8.4
Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Query: 162 LETVKEETLKSDRQYKFWSQISQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETMR 221
L VKE+ + + K Q++Q ++ K + +T +R+ + + VF NK +
Sbjct: 341 LAAVKEDAAATKDRCK---QLTQEMMTEKERSNVVITRMKDRIGTLEKEHNVFQNKIHVS 397
Query: 222 KSLGSEDSRNMKEKLEDMESVLKDLTEEK---RKDVLNSLAKCLGKED-----IRQDLEQ 273
+ ++ E ME+ + L +E R V N+ + K+ +RQD +
Sbjct: 398 YQETQQMQMKFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDYAR 457
Query: 274 RVSEVL-ISGELHMEDPDK 291
V+E+ +G+L E+ K
Sbjct: 458 LVNELTEKTGKLQQEEVQK 476
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 37.7 bits (86), Expect = 0.018
Identities = 31/140 (22%), Positives = 74/140 (52%), Gaps = 14/140 (10%)
Query: 227 EDSRNMKEKLEDMESVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQRVSEVLISGELHM 286
++ +N+ + E+ + +K + EEK KD+ N+ K L +D++++ E + V + ++
Sbjct: 863 QELQNLLKGKEEQMNTMKAVLEEKEKDLANT-GKWL--QDLQEENESLKAHVQEVAQHNL 919
Query: 287 EDPDKPLLSSLFNAAGVLVEARAKAILDFLDALL-----ELSEEQQFVAEALEKGTLPLL 341
++ +S F ++++ + L L+A+L +LS + Q + + ++ L
Sbjct: 920 KEASS---ASQFEELEIVLKEKENE-LKRLEAMLKERESDLSSKTQLLQDVQDEN--KLF 973
Query: 342 KDQVKSVMEQNWDELASSPP 361
K Q++ + +QN+ + +S PP
Sbjct: 974 KSQIEQLKQQNYQQASSFPP 993
Score = 28.9 bits (63), Expect = 8.4
Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Query: 162 LETVKEETLKSDRQYKFWSQISQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETMR 221
L VKE+ + + K Q++Q ++ K + +T +R+ + + VF NK +
Sbjct: 341 LAAVKEDAAATKDRCK---QLTQEMMTEKERSNVVITRMKDRIGTLEKEHNVFQNKIHVS 397
Query: 222 KSLGSEDSRNMKEKLEDMESVLKDLTEEK---RKDVLNSLAKCLGKED-----IRQDLEQ 273
+ ++ E ME+ + L +E R V N+ + K+ +RQD +
Sbjct: 398 YQETQQMQMKFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDYAR 457
Query: 274 RVSEVL-ISGELHMEDPDK 291
V+E+ +G+L E+ K
Sbjct: 458 LVNELTEKTGKLQQEEVQK 476
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 37.7 bits (86), Expect = 0.018
Identities = 65/285 (22%), Positives = 135/285 (47%), Gaps = 38/285 (13%)
Query: 78 QGQKAEFQILDNVDSTGELIVRLPKEI-TISGSFQGFHHQKIKISENRISQQYLATLENR 136
Q +K E Q+ N++ + + K+I + G + QK ++ EN++ QQ +
Sbjct: 949 QNEKEEQQLQGNINELKQSSEQKKKQIEALQGELKIAVLQKTEL-ENKLQQQLTQAAQEL 1007
Query: 137 KLKRELPFSFRSINTRENLYLVTETLETVKEETLKSDRQYKFWSQISQGHLSYKHKGQRE 196
++E I+ +N Y ++ ET K+ L+SD Y S++ K + +
Sbjct: 1008 AAEKE------KISVLQNNY--EKSQETFKQ--LQSDF-YGRESELLATRQDLKSV-EEK 1055
Query: 197 VTIPPNRVLSYRVKQLVFPNK-----ETMRKSLGSEDSRNMKEKLEDMESVLKDLTEE-- 249
+++ ++S R Q+ NK +T + +L +DS +++L++ L+D+ +E
Sbjct: 1056 LSLAQEDLISNR-NQIGNQNKLIQELKTAKATL-EQDSAKKEQQLQERCKALQDIQKEKS 1113
Query: 250 -KRKDVLNSLAKCLGKEDIRQDLEQRVSEVLISGELHMEDPDKPLLSSLFNAAGVLVEAR 308
K K+++N +K E+I+ E+ ++++ + H + K +++L +A +L++ +
Sbjct: 1114 LKEKELVNEKSKLAEIEEIKCRQEKEITKLNEELKSHKLESIKE-ITNLKDAKQLLIQQK 1172
Query: 309 AKAILDFLDALLELSEEQQFVAEAL--EKGTLPLLKDQVKSVMEQ 351
LEL + + A+ EK +LKDQVK E+
Sbjct: 1173 -----------LELQGKADSLKAAVEQEKRNQQILKDQVKKEEEE 1206
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 35.4 bits (80), Expect = 0.090
Identities = 68/307 (22%), Positives = 125/307 (40%), Gaps = 41/307 (13%)
Query: 70 LDELDSGLQGQKAEFQI-LDNVDSTGELIVR----LPKEITISGSFQGFHHQKIKISENR 124
L + L+ +K+EF++ LD+V S E I++ L K H K + ++
Sbjct: 1210 LQRVKQKLEKEKSEFKLELDDVTSNMEQIIKAKANLEKMCRTLEDQMNEHRSKAEETQRS 1269
Query: 125 I----SQQYLATLENRKLKRELPFSFRSIN--TRENLYLVTETLETVK---EETLKSDRQ 175
+ SQ+ EN +L R+L I+ TR L T+ LE +K EE +K+
Sbjct: 1270 VNDLTSQRAKLQTENGELSRQLDEKEALISQLTRGKL-TYTQQLEDLKRQLEEEVKAKNA 1328
Query: 176 YKFWSQISQGH---LSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETMR-KSLGSEDSRN 231
Q ++ L +++ + E RVLS N E + ++ D+
Sbjct: 1329 LAHALQSARHDCDLLREQYEEETEAKAELQRVLSKA-------NSEVAQWRTKYETDAIQ 1381
Query: 232 MKEKLEDMESVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQRVSEVLISGELHMEDPDK 291
E+LE+ + L +E + V AKC E + L+ + ++++ E
Sbjct: 1382 RTEELEEAKKKLAQRLQEAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVDVERS------ 1435
Query: 292 PLLSSLFNAAGVLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLLKD--QVKSVM 349
NAA ++ + + L + EE Q E+ +K L + ++K+
Sbjct: 1436 -------NAAAAALDKKQRNFDKILAEWKQKYEESQSELESSQKEARSLSTELFKLKNAY 1488
Query: 350 EQNWDEL 356
E++ + L
Sbjct: 1489 EESLEHL 1495
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 35.4 bits (80), Expect = 0.090
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 153 ENLYLVTETLETVKEETLKS-DRQYKFWSQISQGHLSYKHKGQREVTIPPNRVLSYRVKQ 211
E ++L+T T V E L+ D + +++Q + Y+ + + + Y Q
Sbjct: 433 EGVFLLTTTPRPVIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRFAQHGTFEYEYSQ 492
Query: 212 LVFPNKETMRKSLGSEDSRNMKEKLEDMESVLKDLTEEKRKDVLNSLAKCLGKEDIRQDL 271
+ + + M K + +NMK+ + +ES ++D E + ++L RQDL
Sbjct: 493 R-WKSLDEMEKQQREQVEKNMKDAKDKLESEMEDAYHEHQANLL------------RQDL 539
Query: 272 EQRVSEVLISGELHMEDPDK 291
+R E+ ELH ++ K
Sbjct: 540 MRRQEELRRMEELHNQEMQK 559
>gi|156071420 hypothetical protein LOC728912 [Homo sapiens]
Length = 790
Score = 34.3 bits (77), Expect = 0.20
Identities = 47/238 (19%), Positives = 100/238 (42%), Gaps = 29/238 (12%)
Query: 132 TLENRKLKRELPFSFRSINTRENLYLVTETLETVKEETLKSDRQYKFWSQISQGHLSYKH 191
T E K+ L S + + ++++ E +EE K + + + + +
Sbjct: 426 TFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQES 485
Query: 192 --KGQREVTIPPNRVLSYRVKQLVFPNKETMRKSLGSEDSRNM--KEKLEDMES----VL 243
+G ++IPP R+ SY+ F + E + + + R+ + K ED E+ +
Sbjct: 486 WDEGYSTLSIPPERLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLS 545
Query: 244 KDLTEEKRKDVL-NSLAKCLGKEDIRQDLEQRVSEVLISGELHMEDPDKPLLSSLFNAAG 302
++L +EK +VL +SL +C + L + D +P S+ +
Sbjct: 546 RELLDEKEPEVLQDSLDRCYSTPSV---------------YLGLTDSCQPYRSAFY---- 586
Query: 303 VLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLLKDQVKSVMEQNWDELASSP 360
VL + R +D +D + + E ++ + + + LL ++ V++ + D S+P
Sbjct: 587 VLEQQRIGLAVD-MDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDSLDRCYSTP 643
>gi|119709825 neuroblastoma breakpoint family, member 11-like [Homo
sapiens]
Length = 790
Score = 34.3 bits (77), Expect = 0.20
Identities = 47/238 (19%), Positives = 100/238 (42%), Gaps = 29/238 (12%)
Query: 132 TLENRKLKRELPFSFRSINTRENLYLVTETLETVKEETLKSDRQYKFWSQISQGHLSYKH 191
T E K+ L S + + ++++ E +EE K + + + + +
Sbjct: 426 TFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQES 485
Query: 192 --KGQREVTIPPNRVLSYRVKQLVFPNKETMRKSLGSEDSRNM--KEKLEDMES----VL 243
+G ++IPP R+ SY+ F + E + + + R+ + K ED E+ +
Sbjct: 486 WDEGYSTLSIPPERLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLS 545
Query: 244 KDLTEEKRKDVL-NSLAKCLGKEDIRQDLEQRVSEVLISGELHMEDPDKPLLSSLFNAAG 302
++L +EK +VL +SL +C + L + D +P S+ +
Sbjct: 546 RELLDEKEPEVLQDSLDRCYSTPSV---------------YLGLTDSCQPYRSAFY---- 586
Query: 303 VLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLLKDQVKSVMEQNWDELASSP 360
VL + R +D +D + + E ++ + + + LL ++ V++ + D S+P
Sbjct: 587 VLEQQRIGLAVD-MDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDSLDRCYSTP 643
>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
sapiens]
Length = 1937
Score = 34.3 bits (77), Expect = 0.20
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 228 DSRNMKEKLEDMESVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQRVSEVLISGELHME 287
D+ E+LE+ + L +E + V AKC E +Q L+ V ++++ E
Sbjct: 1381 DAIQRTEELEEAKKKLAQRLQEAEEHVEAVNAKCASLEKTKQRLQNEVEDLMLDVERS-- 1438
Query: 288 DPDKPLLSSLFNAAGVLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLLKD--QV 345
NAA ++ + + L + EE Q EA +K + L + +V
Sbjct: 1439 -----------NAACAALDKKQRNFDKVLSEWKQKYEETQAELEASQKESRSLSTELFKV 1487
Query: 346 KSVMEQNWDEL 356
K+V E++ D+L
Sbjct: 1488 KNVYEESLDQL 1498
>gi|39753961 IQ motif containing GTPase activating protein 3 [Homo
sapiens]
Length = 1631
Score = 33.9 bits (76), Expect = 0.26
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 262 LGKEDIRQDLEQRVSEVLISGELHMEDPDKPLLSSLFNAAGVLVEARAKAILDFLDALLE 321
LG+E++ +E + VLI+ L D SSL N A L E + + DALL+
Sbjct: 432 LGQEELFVAVEMLSAVVLINRALEARDASG-FWSSLVNPATGLAEVEGENAQRYFDALLK 490
Query: 322 LSEEQQFVAEALEKGTLPLLKDQVKSVMEQNWDEL 356
L +E+ + L L QV + ++ D +
Sbjct: 491 LRQERGMGEDFLSWNDLQATVSQVNAQTQEETDRV 525
>gi|126362971 serine/threonine kinase 10 [Homo sapiens]
Length = 968
Score = 33.5 bits (75), Expect = 0.34
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 163 ETVKEETLKSDRQY-KFWSQISQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETMR 221
E + L+ DR Y +F Q+ K + + EV P + +KQ + + T +
Sbjct: 637 EEARRIRLEQDRDYTRFQEQLKL----MKKEVKNEVEKLPRQQRKESMKQKM--EEHTQK 690
Query: 222 KSLGSEDSRNMKEKLEDMESVLKDLTEEKRKDVLNSLAKCL-GKEDIRQDLEQRVSEV 278
K L D + ++ ED+E +K LT + R+++ + +CL K+++ +D E + E+
Sbjct: 691 KQLLDRDF--VAKQKEDLELAMKRLTTDNRREICDKERECLMKKQELLRDREAALWEM 746
>gi|45356151 non-SMC condensin II complex, subunit D3 [Homo sapiens]
Length = 1498
Score = 33.5 bits (75), Expect = 0.34
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 27/167 (16%)
Query: 214 FPNKETMRKSLGSEDSRNMKEKLEDMESVLKDLTEEKRKDVLN----SLAKCLGKEDIRQ 269
FP E ++ + N + +++ + +L+ T+E+R ++ + S+ C +
Sbjct: 1075 FPQSEREKRLFSLKGKSNKERRMKIYKFLLEHFTDEQRFNITSKICLSILACFADGILPL 1134
Query: 270 DLE-----QRVSEVLISGELHM----EDPDKPLL---SSLFNAAGVLVEARAKAI----- 312
DL+ EVL S E+ + PDK LL + A V+ EA+ K I
Sbjct: 1135 DLDASELLSDTFEVLSSKEIKLLAMRSKPDKDLLMEEDDMALANVVMQEAQKKLISQVQK 1194
Query: 313 LDFLDALLELSEEQQFVAEALEKGTLPLLKD---QVKSVMEQNWDEL 356
+F++ ++ + + V LEK +P L++ ++ VM+ DEL
Sbjct: 1195 RNFIENIIPIIISLKTV---LEKNKIPALRELMHYLREVMQDYRDEL 1238
>gi|24308219 synaptotagmin IV [Homo sapiens]
Length = 425
Score = 33.5 bits (75), Expect = 0.34
Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 7/155 (4%)
Query: 190 KHKGQREVTIPPNRVLSYRVKQLVFPNKETMRKSLGSEDSRNMKEKLEDMESVLKDLTEE 249
+ K + PP + + ++P +K G++D +K K ++ L L E
Sbjct: 39 QRKSSKSNKTPPYKFVHVLKGVDIYPENLNSKKKFGADDKNEVKNKPAVPKNSL-HLDLE 97
Query: 250 KRKDVLNSLAKCLGKEDIRQDLEQRVSEVLISGELHMEDPDKPLLSSLFNAAGVLVEARA 309
KR D+ + K K DLE ++ + GE P+ SL ++ + E +
Sbjct: 98 KR-DLNGNFPKTNLKPGSPSDLENATPKLFLEGEKESVSPE-----SLKSSTSLTSEEKQ 151
Query: 310 KAILDFLDALLELSEEQQFVAEALEKGTLPLLKDQ 344
+ + +L E + FV E LP + +Q
Sbjct: 152 EKLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQ 186
>gi|63054866 leucine rich repeat containing 16A [Homo sapiens]
Length = 1326
Score = 33.1 bits (74), Expect = 0.45
Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 186 HLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKETMRKSLGSEDSRNMKEKLEDMESVLKD 245
H H +R T+P L + + ++ +++S+ + + E+LED+++ +
Sbjct: 862 HKLADHFSRRGKTLPQQESLEIELAE-----EKPVKRSIITVEELTEIERLEDLDTCMMT 916
Query: 246 LTEEKRKDVLNSLAKCLGKE-DIRQDLEQRVSEVLISGELHMEDPDKPLLSSLFNAAGVL 304
+ KRK + + + + + + ++ DL++ + EV I H+EDP P L ++G +
Sbjct: 917 -PKSKRKSIHSRMLRPVSRAFEMEFDLDKALEEVPI----HIEDPPFPSLRQEKRSSGFI 971
Query: 305 VE 306
E
Sbjct: 972 SE 973
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 33.1 bits (74), Expect = 0.45
Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 19/143 (13%)
Query: 152 RENLYLVTETLETVKEETLKSDR----------QYKFWSQISQGHLSY-------KHKGQ 194
RE Y E L+ +E+ L+ +R QY+ ++ Q + +
Sbjct: 986 REKKYREEEELQQEEEQLLREEREKRRRQEWERQYRKKDELQQEEEQLLREEREKRRLQE 1045
Query: 195 REVTIPPNRVLSYRVKQLVFPNKETMRKSLGSEDSRNMKEKLEDMESVLKDLTEEKRKDV 254
RE L +QL+ +ET R+ R +E ++ E +L++ E++R+
Sbjct: 1046 RERQYREEEELQQEEEQLLGEERETRRRQELERQYRKEEELQQEEEQLLREEPEKRRRQ- 1104
Query: 255 LNSLAKCLGKEDIRQDLEQRVSE 277
+C +E+++Q+ EQ + E
Sbjct: 1105 -ERERQCREEEELQQEEEQLLRE 1126
>gi|224586823 coiled-coil domain containing 110 isoform b [Homo
sapiens]
Length = 796
Score = 32.7 bits (73), Expect = 0.58
Identities = 68/295 (23%), Positives = 120/295 (40%), Gaps = 68/295 (23%)
Query: 100 LPKEITISGSFQGFHHQKIKISENRISQQYLATLENRKLKRELPFSFRSI-----NTREN 154
LP T+S F + K+S++ + + +N K +E+P + ++I ++R
Sbjct: 286 LPFRETVSKFHVHFCRKCKKLSKSEMHRGK----KNEKNNKEIPITGKNITDLKFHSRVP 341
Query: 155 LYLVTETLETVKEETLKSDRQ---YKFWSQISQGHLSYKHKGQREVTIPPNRVLSYRVKQ 211
Y ++ L+ K E +RQ K S IS+ + K E + + L +K+
Sbjct: 342 RYTLS-FLDQTKHEMKDKERQPFLVKQGSIISENEKTSKVNSVTEQCVAKIQYLQNYLKE 400
Query: 212 LVFPNKETMRKSLGSED-------------SRNMKEKLEDMESVLKDLTEEK-------- 250
V K+ M L SE+ ++++ +K+E E LK+L EEK
Sbjct: 401 SVQIQKKVME--LESENLNLKSKMKPLIFTTQSLIQKVETYEKQLKNLVEEKSTIQSKLS 458
Query: 251 ------------------RKDVLNSLAKCLGKEDIRQDLE-QRVSEVL--ISGELHMEDP 289
+ +VL K L +++I+ LE Q++ E L + + H
Sbjct: 459 KTEEYSKECLKEFKKIISKYNVLQGQNKTLEEKNIQLSLEKQQMMEALDQLKSKEHKTQS 518
Query: 290 DKPLLSSLFNAAGVLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLLKDQ 344
D ++++ N + +EA IL D E LEK T LLK++
Sbjct: 519 DMAIVNNENNRMSIEMEAMKTNILLIQDE-----------KEMLEKKTHQLLKEK 562
>gi|22749515 coiled-coil domain containing 110 isoform a [Homo
sapiens]
Length = 833
Score = 32.7 bits (73), Expect = 0.58
Identities = 68/295 (23%), Positives = 120/295 (40%), Gaps = 68/295 (23%)
Query: 100 LPKEITISGSFQGFHHQKIKISENRISQQYLATLENRKLKRELPFSFRSI-----NTREN 154
LP T+S F + K+S++ + + +N K +E+P + ++I ++R
Sbjct: 323 LPFRETVSKFHVHFCRKCKKLSKSEMHRGK----KNEKNNKEIPITGKNITDLKFHSRVP 378
Query: 155 LYLVTETLETVKEETLKSDRQ---YKFWSQISQGHLSYKHKGQREVTIPPNRVLSYRVKQ 211
Y ++ L+ K E +RQ K S IS+ + K E + + L +K+
Sbjct: 379 RYTLS-FLDQTKHEMKDKERQPFLVKQGSIISENEKTSKVNSVTEQCVAKIQYLQNYLKE 437
Query: 212 LVFPNKETMRKSLGSED-------------SRNMKEKLEDMESVLKDLTEEK-------- 250
V K+ M L SE+ ++++ +K+E E LK+L EEK
Sbjct: 438 SVQIQKKVME--LESENLNLKSKMKPLIFTTQSLIQKVETYEKQLKNLVEEKSTIQSKLS 495
Query: 251 ------------------RKDVLNSLAKCLGKEDIRQDLE-QRVSEVL--ISGELHMEDP 289
+ +VL K L +++I+ LE Q++ E L + + H
Sbjct: 496 KTEEYSKECLKEFKKIISKYNVLQGQNKTLEEKNIQLSLEKQQMMEALDQLKSKEHKTQS 555
Query: 290 DKPLLSSLFNAAGVLVEARAKAILDFLDALLELSEEQQFVAEALEKGTLPLLKDQ 344
D ++++ N + +EA IL D E LEK T LLK++
Sbjct: 556 DMAIVNNENNRMSIEMEAMKTNILLIQDE-----------KEMLEKKTHQLLKEK 599
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 32.7 bits (73), Expect = 0.58
Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 15/124 (12%)
Query: 217 KETMRKSLGSEDSRNMK--EKLEDMESVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQR 274
K+T +SL SE S +K KLE+ SVLKD T++ ++++ + ++ + +Q+
Sbjct: 682 KQTELESLSSELSEVLKARHKLEEELSVLKDQTDKMKQELEAKM------DEQKNHHQQQ 735
Query: 275 VSEVLISGELHMEDPDKPLLSSLFNAAGVLVEARAK------AILDFLDALLELSEEQQF 328
V ++ E+ ++ +K L + N +L++ R K A ++ L+A ++ SE +
Sbjct: 736 VDSIIKEHEVSIQRTEKALKDQI-NQLELLLKERDKHLKEHQAHVENLEADIKRSEGELQ 794
Query: 329 VAEA 332
A A
Sbjct: 795 QASA 798
>gi|29171753 PTPRF interacting protein alpha 1 isoform a [Homo
sapiens]
Length = 1185
Score = 32.7 bits (73), Expect = 0.58
Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 14/179 (7%)
Query: 160 ETLETVKEETLKSDRQY-KFWSQISQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKE 218
E L+T +++ +KS+ K + + + +R T+ + + R V +
Sbjct: 285 EDLDTARKDLIKSEEMNTKLQRDVREAMAQKEDMEERITTLEKRYLAAQREATSVHDLND 344
Query: 219 TMRKSLGSEDSRNMKEKLEDMESVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQRVSEV 278
+ + ++DS M + ED L++ E + + +L K ++ +L QRV+ +
Sbjct: 345 KLENEIANKDS--MHRQTEDKNRQLQERLELAEQKLQQTLRKAETLPEVEAELAQRVAAL 402
Query: 279 LISGELH--MEDPDKPLLSSLFNAAGVLVEARA---------KAILDFLDALLELSEEQ 326
+ E H +E+ + + + L L AR K + D +D LL S E+
Sbjct: 403 SKAEERHGNIEERLRQMEAQLEEKNQELQRARQREKMNEEHNKRLSDTVDKLLSESNER 461
>gi|4505983 PTPRF interacting protein alpha 1 isoform b [Homo
sapiens]
Length = 1202
Score = 32.7 bits (73), Expect = 0.58
Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 14/179 (7%)
Query: 160 ETLETVKEETLKSDRQY-KFWSQISQGHLSYKHKGQREVTIPPNRVLSYRVKQLVFPNKE 218
E L+T +++ +KS+ K + + + +R T+ + + R V +
Sbjct: 285 EDLDTARKDLIKSEEMNTKLQRDVREAMAQKEDMEERITTLEKRYLAAQREATSVHDLND 344
Query: 219 TMRKSLGSEDSRNMKEKLEDMESVLKDLTEEKRKDVLNSLAKCLGKEDIRQDLEQRVSEV 278
+ + ++DS M + ED L++ E + + +L K ++ +L QRV+ +
Sbjct: 345 KLENEIANKDS--MHRQTEDKNRQLQERLELAEQKLQQTLRKAETLPEVEAELAQRVAAL 402
Query: 279 LISGELH--MEDPDKPLLSSLFNAAGVLVEARA---------KAILDFLDALLELSEEQ 326
+ E H +E+ + + + L L AR K + D +D LL S E+
Sbjct: 403 SKAEERHGNIEERLRQMEAQLEEKNQELQRARQREKMNEEHNKRLSDTVDKLLSESNER 461
>gi|110347568 centrosomal protein 152kDa [Homo sapiens]
Length = 1654
Score = 32.7 bits (73), Expect = 0.58
Identities = 43/203 (21%), Positives = 91/203 (44%), Gaps = 33/203 (16%)
Query: 102 KEITISGSFQGFHHQKIKISENRISQQYLATLE--NRKLKRELPFSFRSINTRE-NLYLV 158
+EIT S +F+G Q + +EN + L+ N+ +R+L +N E + +
Sbjct: 210 QEITGSDTFEGLQQQFLGANENSAENMQIIQLQVLNKAKERQLENLIEKLNESERQIRYL 269
Query: 159 TETLETVKEETLKSDRQYKFWSQISQGHLSYKHKGQREVTIPPN-RVLSYRVKQLVFPNK 217
L +K+E + + + +++ +RE+ + + L +++ L +
Sbjct: 270 NHQLVIIKDE------KDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQIQALKVNEE 323
Query: 218 ETMRKSLGSEDS-RNMKEKLEDM-------------ESVLKDLTEEKRKDVLNSLAKCLG 263
+ ++KS +E + ++K++L D+ ES++ LT++ + VL SL K L
Sbjct: 324 QMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESIVMGLTKKYEEQVL-SLQKNLD 382
Query: 264 --------KEDIRQDLEQRVSEV 278
+EDI L+ V ++
Sbjct: 383 ATVTALKEQEDICSRLKDHVKQL 405
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,730,819
Number of Sequences: 37866
Number of extensions: 580136
Number of successful extensions: 2370
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 2273
Number of HSP's gapped (non-prelim): 177
length of query: 394
length of database: 18,247,518
effective HSP length: 104
effective length of query: 290
effective length of database: 14,309,454
effective search space: 4149741660
effective search space used: 4149741660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.