Guide to the Human Genome
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Name: DFNA5 Sequence: fasta or formatted (496aa) NCBI GI: 188536092
Description:

deafness, autosomal dominant 5 protein isoform a

Referenced in:

Auditory and Vestibular Functions

Other entries for this name:
alt prot [332aa] deafness, autosomal dominant 5 protein isoform b
alt mRNA [496aa] deafness, autosomal dominant 5 protein isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         32           3
 C cysteine            2.6         13           2
 D aspartate           6.7         33           2
 E glutamate           6.2         31           2
 F phenylalanine       4.8         24           1
 G glycine             6.5         32           2
 H histidine           1.2          6           1
 I isoleucine          4.2         21           2
 K lysine              5.8         29           3
 L leucine            14.5         72           3
 M methionine          1.4          7           1
 N asparagine          2.6         13           1
 P proline             4.2         21           1
 Q glutamine           6.0         30           3
 R arginine            4.0         20           1
 S serine              7.1         35           2
 T threonine           5.2         26           2
 V valine              8.7         43           3
 W tryptophan          0.4          2           1
 Y tyrosine            1.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   deafness, autosomal dominant 5 protein isoform a [H... 
DFNA5                 1.000   deafness, autosomal dominant 5 protein isoform a [Hom...
DFNA5                 0.665   deafness, autosomal dominant 5 protein isoform b [H...
DFNB59                0.118   deafness, autosomal recessive 59 
GSDMD                 0.035   gasdermin D 
GSDMB                 0.018   gasdermin-like isoform 1 
GSDMB                 0.018   gasdermin-like isoform 2 
SLMAP                 0.008   sarcolemma associated protein 
CKAP5                 0.006   colonic and hepatic tumor over-expressed protein iso...
CKAP5                 0.006   colonic and hepatic tumor over-expressed protein iso...
CEP290                0.006   centrosomal protein 290kDa 
PDE4DIP               0.004   phosphodiesterase 4D interacting protein isoform 1 ...
MYH8                  0.004   myosin, heavy chain 8, skeletal muscle, perinatal [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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