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Search of human proteins with 109637798
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109637798 RAD52 homolog [Homo sapiens]
(418 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|109637798 RAD52 homolog [Homo sapiens] 843 0.0
gi|4758528 hepatocyte growth factor-regulated tyrosine kinase su... 42 0.001
gi|58331242 formin homology 2 domain containing 3 [Homo sapiens] 39 0.011
gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo s... 38 0.015
gi|38788260 bromodomain PHD finger transcription factor isoform ... 37 0.033
gi|38788274 bromodomain PHD finger transcription factor isoform ... 37 0.033
gi|148277037 AP2 associated kinase 1 [Homo sapiens] 37 0.043
gi|56550047 uveal autoantigen with coiled-coil domains and ankyr... 36 0.057
gi|59850762 uveal autoantigen with coiled-coil domains and ankyr... 36 0.057
gi|50513245 chromatin assembly factor 1, subunit A (p150) [Homo ... 35 0.097
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 35 0.097
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 35 0.097
gi|148833508 notch1 preproprotein [Homo sapiens] 35 0.17
gi|23111038 sorting nexin 2 [Homo sapiens] 35 0.17
gi|169211642 PREDICTED: hypothetical protein [Homo sapiens] 34 0.22
gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo s... 34 0.22
gi|46370057 ring finger protein 216 isoform b [Homo sapiens] 34 0.22
gi|46358403 ring finger protein 216 isoform a [Homo sapiens] 34 0.22
gi|194097365 FtsJ homolog 3 [Homo sapiens] 34 0.22
gi|32307126 nuclear receptor coactivator 3 isoform a [Homo sapiens] 34 0.28
gi|33286444 mastermind-like 2 [Homo sapiens] 34 0.28
gi|13346498 WW domain containing transcription regulator 1 [Homo... 34 0.28
gi|31442420 shroom family member 1 [Homo sapiens] 34 0.28
gi|90903231 huntingtin [Homo sapiens] 33 0.48
gi|91208420 bassoon protein [Homo sapiens] 33 0.48
gi|21264616 epidermal growth factor receptor pathway substrate 8... 33 0.48
gi|239756693 PREDICTED: similar to coiled-coil domain containing... 33 0.63
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 33 0.63
gi|38158015 mastermind-like 3 [Homo sapiens] 33 0.63
gi|226442791 runt-related transcription factor 2 isoform b [Homo... 32 0.82
>gi|109637798 RAD52 homolog [Homo sapiens]
Length = 418
Score = 843 bits (2179), Expect = 0.0
Identities = 418/418 (100%), Positives = 418/418 (100%)
Query: 1 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG 60
MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG
Sbjct: 1 MSGTEEAILGGRDSHPAAGGGSVLCFGQCQYTAEEYQAIQKALRQRLGPEYISSRMAGGG 60
Query: 61 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY 120
QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY
Sbjct: 61 QKVCYIEGHRVINLANEMFGYNGWAHSITQQNVDFVDLNNGKFYVGVCAFVRVQLKDGSY 120
Query: 121 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR 180
HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR
Sbjct: 121 HEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPR 180
Query: 181 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS 240
QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS
Sbjct: 181 QLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCS 240
Query: 241 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST 300
SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST
Sbjct: 241 SRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHST 300
Query: 301 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL 360
PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL
Sbjct: 301 PVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLAL 360
Query: 361 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS 418
NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS
Sbjct: 361 NNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYDPS 418
>gi|4758528 hepatocyte growth factor-regulated tyrosine kinase
substrate [Homo sapiens]
Length = 777
Score = 42.0 bits (97), Expect = 0.001
Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 20/182 (10%)
Query: 247 SAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVT--HSTPVTV 304
+A++ E Q L Q + + +ER+ ++ S P AE +A APP + +S+PV
Sbjct: 255 TALQEEEELQLALALSQSEAEEKERLRQKSTYTSYPKAEPMPSASSAPPASSLYSSPVNS 314
Query: 305 SEPLLEKDFLAGVTQELIKTLEDN-------SEKWAVTPDAGDGVVKPSSRADPAQTSDT 357
S PL E + EL + L N + + TP A + +P+++ + T
Sbjct: 315 SAPLAE-----DIDPELARYLNRNYWEKKQEEARKSPTPSAPVPLTEPAAQPGEGHAAPT 369
Query: 358 LALNNQMV---TQNRTPHSVCHQKPQAKSGSWD---LQTYSADQRTTGNWESHRKSQDMK 411
+ N + +Q P +PQ +G + Q A Q + + KS M+
Sbjct: 370 NVVENPLPETDSQPIPPSGGPFSEPQFHNGESEESHEQFLKALQNAVTTFVNRMKSNHMR 429
Query: 412 KR 413
R
Sbjct: 430 GR 431
>gi|58331242 formin homology 2 domain containing 3 [Homo sapiens]
Length = 1439
Score = 38.5 bits (88), Expect = 0.011
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 228 PSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKS 287
P +A+ + + R +S A+E T +R L+QKQ + RER K + ++ T S K
Sbjct: 1247 PPYAIREVNINKFCRIISEFALEYRTTRERVLQQKQKRANHRER-NKTRGKMITDSG-KF 1304
Query: 288 EAAPPAPPVTHSTPVTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSS 347
+ PAPP + ++ +E E + + V + ++ED TP G V+ S
Sbjct: 1305 SGSSPAPP-SQPQGLSYAEDAAEHENMKAVLKTSSPSVED------ATPALG---VRTRS 1354
Query: 348 RADPAQTS 355
RA TS
Sbjct: 1355 RASRGSTS 1362
>gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo
sapiens]
Length = 1283
Score = 38.1 bits (87), Expect = 0.015
Identities = 54/242 (22%), Positives = 87/242 (35%), Gaps = 48/242 (19%)
Query: 194 QDLEPSVEEARYNSCRPNMALGH-PQLQQV-----TSPSRPSHAVIPADQDCSSR----- 242
Q EP E + RP ++ PQ + V SP A +P+ D S
Sbjct: 509 QITEPEAEPESKSEPRPPISSPRAPQTRAVKPRLEVSPEAQPTARLPSPTDSPSSLPPLP 568
Query: 243 -SLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHSTP 301
S ++V SE H + + +PS S ++P A P++ STP
Sbjct: 569 SSSGQASVPSELGHGADTQSSE-----------------SPSVFSSLSSPIAAPISTSTP 611
Query: 302 VTVSEPLLEKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVV-----KPSSRADPAQTSD 356
+ S PL+++ L+ E +E P++G V+ +PS A+
Sbjct: 612 IE-SWPLVDRGQAKSEGPPLLPKAELQTESLTPVPNSGSSVLGSLFKQPSFPANKGTEDS 670
Query: 357 TLALNNQMVTQNRTPHSVCHQKPQAKSGSWDLQTYSADQRTTGNWESHRKSQDMKKRKYD 416
+ + T+ T S +L+ +Q TG E KK+ Y
Sbjct: 671 LMGRTRETGTEKNT-------------SSLELEESLPEQPETGRQEEELPRFPCKKQDYS 717
Query: 417 PS 418
PS
Sbjct: 718 PS 719
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 37.0 bits (84), Expect = 0.033
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 176 NKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPA 235
+KL Q+ + D T Q EA+ + +P+ Q Q T P P+ +
Sbjct: 2367 SKLSPQMQVHQDKTLPPAQSSSVGPAEAQPQTAQPSA-----QPQPQTQPQSPAQPEVQT 2421
Query: 236 DQDCSSRSLSSSAVESEA--TH-QRKLRQKQLQQQFRERMEKQQ-VRVSTPSAEKSEAAP 291
+ +++ SS V SEA TH Q Q Q Q + ++ Q VRV +PS + +
Sbjct: 2422 QPEVQTQTTVSSHVPSEAQPTHAQSSKPQVAAQSQPQSNVQGQSPVRVQSPSQTRIRPST 2481
Query: 292 P---APPVTHSTPVTVSEPL 308
P +P T S+P+
Sbjct: 2482 PSQLSPGQQSQVQTTTSQPI 2501
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 37.0 bits (84), Expect = 0.033
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 176 NKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPA 235
+KL Q+ + D T Q EA+ + +P+ Q Q T P P+ +
Sbjct: 2241 SKLSPQMQVHQDKTLPPAQSSSVGPAEAQPQTAQPSA-----QPQPQTQPQSPAQPEVQT 2295
Query: 236 DQDCSSRSLSSSAVESEA--TH-QRKLRQKQLQQQFRERMEKQQ-VRVSTPSAEKSEAAP 291
+ +++ SS V SEA TH Q Q Q Q + ++ Q VRV +PS + +
Sbjct: 2296 QPEVQTQTTVSSHVPSEAQPTHAQSSKPQVAAQSQPQSNVQGQSPVRVQSPSQTRIRPST 2355
Query: 292 P---APPVTHSTPVTVSEPL 308
P +P T S+P+
Sbjct: 2356 PSQLSPGQQSQVQTTTSQPI 2375
>gi|148277037 AP2 associated kinase 1 [Homo sapiens]
Length = 961
Score = 36.6 bits (83), Expect = 0.043
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 10/107 (9%)
Query: 179 PRQLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRP-------SHA 231
P LP++ LT KR ++P + A +S +P + PQ + PS+P
Sbjct: 379 PGILPIQPALTPRKRATVQPPPQAAG-SSNQPGLLASVPQPKPQAPPSQPLPQTQAKQPQ 437
Query: 232 VIPADQDCSSRSLSSSAVESEAT--HQRKLRQKQLQQQFRERMEKQQ 276
P Q S +++AT HQ++L KQ QQQ + +QQ
Sbjct: 438 APPTPQQTPSTQAQGLPAQAQATPQHQQQLFLKQQQQQQQPPPAQQQ 484
>gi|56550047 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 2 [Homo sapiens]
Length = 1403
Score = 36.2 bits (82), Expect = 0.057
Identities = 47/216 (21%), Positives = 90/216 (41%), Gaps = 17/216 (7%)
Query: 166 ILDKDYL--RSLNKLPRQLPLE-VDLTK--AKRQDLEPSVEEARYNSCR--PNMALGHPQ 218
I DK+ + R+L Q+ E + L + AK L S+ + + ++ N G +
Sbjct: 887 IKDKNEILKRNLENTQNQIKAEYISLAEHEAKMSSLSQSMRKVQDSNAEILANYRKGQEE 946
Query: 219 LQQVTSPSRPSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVR 278
+ + + + + Q+C + E + K +K+L+ Q E+ +K V
Sbjct: 947 IVTLHAEIKAQKKELDTIQECIKVKYAPIVSFEECERKFKATEKELKDQLSEQTQKYSVS 1006
Query: 279 VSTPSAEKSEAAPPAPPV-THSTPVTVSEPLLEKDF-----LAGVTQELIKTLEDNSEKW 332
K E + T + L+EK L+ T EL K L+D S+K+
Sbjct: 1007 EEEVKKNKQENDKLKKEIFTLQKDLRDKTVLIEKSHEMERALSRKTDELNKQLKDLSQKY 1066
Query: 333 AVTPDAGDGVVKPSSRADPAQTSDTLALNNQMVTQN 368
+ + +V+ +++ QTS+ LA+ N + Q+
Sbjct: 1067 TEVKNVKEKLVEENAK----QTSEILAVQNLLQKQH 1098
>gi|59850762 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 1 [Homo sapiens]
Length = 1416
Score = 36.2 bits (82), Expect = 0.057
Identities = 47/216 (21%), Positives = 90/216 (41%), Gaps = 17/216 (7%)
Query: 166 ILDKDYL--RSLNKLPRQLPLE-VDLTK--AKRQDLEPSVEEARYNSCR--PNMALGHPQ 218
I DK+ + R+L Q+ E + L + AK L S+ + + ++ N G +
Sbjct: 900 IKDKNEILKRNLENTQNQIKAEYISLAEHEAKMSSLSQSMRKVQDSNAEILANYRKGQEE 959
Query: 219 LQQVTSPSRPSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVR 278
+ + + + + Q+C + E + K +K+L+ Q E+ +K V
Sbjct: 960 IVTLHAEIKAQKKELDTIQECIKVKYAPIVSFEECERKFKATEKELKDQLSEQTQKYSVS 1019
Query: 279 VSTPSAEKSEAAPPAPPV-THSTPVTVSEPLLEKDF-----LAGVTQELIKTLEDNSEKW 332
K E + T + L+EK L+ T EL K L+D S+K+
Sbjct: 1020 EEEVKKNKQENDKLKKEIFTLQKDLRDKTVLIEKSHEMERALSRKTDELNKQLKDLSQKY 1079
Query: 333 AVTPDAGDGVVKPSSRADPAQTSDTLALNNQMVTQN 368
+ + +V+ +++ QTS+ LA+ N + Q+
Sbjct: 1080 TEVKNVKEKLVEENAK----QTSEILAVQNLLQKQH 1111
>gi|50513245 chromatin assembly factor 1, subunit A (p150) [Homo
sapiens]
Length = 956
Score = 35.4 bits (80), Expect = 0.097
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 279 VSTPSAEKSEAAPPAPPVTHS--TPVTVSEPL--LEKDFLAGVTQELIKTLEDNSEK 331
+S+PS+ S PPAPP HS +P S PL + K F+ G T++ L+ + E+
Sbjct: 287 LSSPSSTSSPEGPPAPPKQHSSTSPFPTSTPLRRITKKFVKGSTEKNKLRLQRDQER 343
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 35.4 bits (80), Expect = 0.097
Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 13/192 (6%)
Query: 192 KRQDLEPSVE-EARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCSSRSLSSSAVE 250
++ +L P + +A+ + A Q Q + A A +++ + + +
Sbjct: 169 QQSELTPMLAAQAQVQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQ 228
Query: 251 SEATHQRKLR-QKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHSTPVTVSEPLL 309
++A Q + + Q Q+Q Q + +++ Q V STP+ + PAP V+ ST +
Sbjct: 229 AQAQAQAQAQAQAQVQAQVQAQVQAQAVGASTPT-----TSSPAPAVSTSTSSSTPSSTT 283
Query: 310 EKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPS-SRADPAQTSDTLALNNQMVTQN 368
A + + T + TP + V P+ S + PA T+ + Q Q
Sbjct: 284 STTTTATSVAQTVSTPTTQDQ----TPSSAVSVATPTVSVSTPAPTATPVQTVPQPHPQT 339
Query: 369 RTPHSVCHQKPQ 380
P +V H PQ
Sbjct: 340 -LPPAVPHSVPQ 350
>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
sapiens]
Length = 1098
Score = 35.4 bits (80), Expect = 0.097
Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 13/192 (6%)
Query: 192 KRQDLEPSVE-EARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCSSRSLSSSAVE 250
++ +L P + +A+ + A Q Q + A A +++ + + +
Sbjct: 169 QQSELTPMLAAQAQVQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQ 228
Query: 251 SEATHQRKLR-QKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHSTPVTVSEPLL 309
++A Q + + Q Q+Q Q + +++ Q V STP+ + PAP V+ ST +
Sbjct: 229 AQAQAQAQAQAQAQVQAQVQAQVQAQAVGASTPT-----TSSPAPAVSTSTSSSTPSSTT 283
Query: 310 EKDFLAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPS-SRADPAQTSDTLALNNQMVTQN 368
A + + T + TP + V P+ S + PA T+ + Q Q
Sbjct: 284 STTTTATSVAQTVSTPTTQDQ----TPSSAVSVATPTVSVSTPAPTATPVQTVPQPHPQT 339
Query: 369 RTPHSVCHQKPQ 380
P +V H PQ
Sbjct: 340 -LPPAVPHSVPQ 350
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 34.7 bits (78), Expect = 0.17
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
Query: 196 LEPSVEEARYNSCRPNMALGH-----PQLQQ-VTSPSRPSHAVIPADQDCSSRSLSSSAV 249
L+ + +YN R ++A G P LQ + P S A Q S + L S+ +
Sbjct: 2314 LQSGMVPNQYNPLRGSVAPGPLSTQAPSLQHGMVGPLHSSLAASALSQMMSYQGLPSTRL 2373
Query: 250 ESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHSTPVTVSEPLL 309
AT ++ +Q+Q Q +M++Q ++ + ++S PP PP H + + L
Sbjct: 2374 ---ATQPHLVQTQQVQPQ-NLQMQQQNLQPANIQQQQSLQPPPPPPQPHLGVSSAASGHL 2429
Query: 310 EKDFLAG 316
+ FL+G
Sbjct: 2430 GRSFLSG 2436
>gi|23111038 sorting nexin 2 [Homo sapiens]
Length = 519
Score = 34.7 bits (78), Expect = 0.17
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 223 TSPSRPSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTP 282
+SPS P A +PA+ D S+ S E R + F E E +V + +P
Sbjct: 37 SSPSSPEPASLPAE-DISANSNGPKPTEVVLDDDR-------EDLFAEATE--EVSLDSP 86
Query: 283 SAEKSEAAPPAPPVTHSTPVTVSEPLLE 310
E ++ P+P VT TP T+ P +E
Sbjct: 87 EREPILSSEPSPAVTPVTPTTLIAPRIE 114
>gi|169211642 PREDICTED: hypothetical protein [Homo sapiens]
Length = 378
Score = 34.3 bits (77), Expect = 0.22
Identities = 54/213 (25%), Positives = 76/213 (35%), Gaps = 28/213 (13%)
Query: 136 ALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQD 195
A + E R+ A + L ALR C L + R L +L R+ L +
Sbjct: 172 AANAELRREVAQREALVSALR--------CSLRTEERRFLEELRRRSHRATVLGT----E 219
Query: 196 LEPSVEEARYNSCRPNMA--------LGHPQLQQVTSPSRPSHAVIPADQDCSSRSLSSS 247
L+ E A Y SC+ + A PQ SP P + A + R+
Sbjct: 220 LQKHTEAAAYLSCQLHAARQRLQAAAAQRPQPAPAASPGAPGPSRPAARAQPAQRARGPG 279
Query: 248 AVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHSTPVTV--- 304
A R R + R S PS+ K A PAPP + + V
Sbjct: 280 VGARLAGVTRDGRGGPARDAARSPQAGPGSEGSRPSSRKRGEAAPAPPKSPNRQPFVLPD 339
Query: 305 ----SEPLLEKDFLAGVTQELIKTLEDN-SEKW 332
S PLL ++FL G + + ED+ S W
Sbjct: 340 VSKASSPLLAREFLRGAERGHLLYREDSPSRSW 372
>gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo
sapiens]
Length = 378
Score = 34.3 bits (77), Expect = 0.22
Identities = 54/213 (25%), Positives = 76/213 (35%), Gaps = 28/213 (13%)
Query: 136 ALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQD 195
A + E R+ A + L ALR C L + R L +L R+ L +
Sbjct: 172 AANAELRREVAQREALVSALR--------CSLRTEERRFLEELRRRSHRATVLGT----E 219
Query: 196 LEPSVEEARYNSCRPNMA--------LGHPQLQQVTSPSRPSHAVIPADQDCSSRSLSSS 247
L+ E A Y SC+ + A PQ SP P + A + R+
Sbjct: 220 LQKHTEAAAYLSCQLHAARQRLQAAAAQRPQPAPAASPGAPGPSRPAARAQPAQRARGPG 279
Query: 248 AVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHSTPVTV--- 304
A R R + R S PS+ K A PAPP + + V
Sbjct: 280 VGARLAGVTRDGRGGPARDAARSPQAGPGSEGSRPSSRKRGEAAPAPPKSPNRQPFVLPD 339
Query: 305 ----SEPLLEKDFLAGVTQELIKTLEDN-SEKW 332
S PLL ++FL G + + ED+ S W
Sbjct: 340 VSKASSPLLAREFLRGAERGHLLYREDSPSRSW 372
>gi|46370057 ring finger protein 216 isoform b [Homo sapiens]
Length = 866
Score = 34.3 bits (77), Expect = 0.22
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 126 YGVSEGLKSKALSLEKARKEAVTD-GLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPL 184
Y S+ L+++ S E + E +++ G AL +C LD Y +SLN+ PR++
Sbjct: 131 YTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQSLNQQPREITN 190
Query: 185 EVDLTKAKRQDLEPSVEEAR--YNSCRPNMALGHPQLQQ--VTSPSRPSHA 231
+V Q+ +P E R + P A P+ QQ ++ PS P A
Sbjct: 191 QV-----VPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPA 236
>gi|46358403 ring finger protein 216 isoform a [Homo sapiens]
Length = 923
Score = 34.3 bits (77), Expect = 0.22
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 126 YGVSEGLKSKALSLEKARKEAVTD-GLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPL 184
Y S+ L+++ S E + E +++ G AL +C LD Y +SLN+ PR++
Sbjct: 188 YTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQSLNQQPREITN 247
Query: 185 EVDLTKAKRQDLEPSVEEAR--YNSCRPNMALGHPQLQQ--VTSPSRPSHA 231
+V Q+ +P E R + P A P+ QQ ++ PS P A
Sbjct: 248 QV-----VPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPA 293
>gi|194097365 FtsJ homolog 3 [Homo sapiens]
Length = 847
Score = 34.3 bits (77), Expect = 0.22
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 245 SSSAVESEATHQRKLRQKQL----QQQFRERMEKQQVRVSTPSAEKSEAAPP-----APP 295
S + +E +A ++ Q QL +++ R++ +KQQ+ + PS K+E P AP
Sbjct: 534 SFAGIEDDADEALEISQAQLLFENRRKGRQQQQKQQLPQTPPSCLKTEIMSPLYQDEAPK 593
Query: 296 VTHSTPVTVSEPLLEKDFLAGVTQELIKTLEDNSEKW 332
T ++ T + LE + G++ T + E W
Sbjct: 594 GTEASSGTEAATGLEGEEKDGISDSDSSTSSEEEESW 630
>gi|32307126 nuclear receptor coactivator 3 isoform a [Homo sapiens]
Length = 1424
Score = 33.9 bits (76), Expect = 0.28
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 172 LRSLNKLPRQLPLEVDLTKAKRQDLEPS---VEEARYNSCRPNMALGHPQLQ-QVTSPSR 227
+R P+QL +++ +Q L S +E N A+ P +Q QV+S
Sbjct: 1160 MRPRTNTPKQLRMQLQQRLQGQQFLNQSRQALELKMENPTAGGAAVMRPMMQPQVSSQQG 1219
Query: 228 PSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKS 287
+A + A + S LS + + +Q+Q QQQ +++ ++QQ + +++
Sbjct: 1220 FLNAQMVAQR--SRELLSHHFRQQRVAMMMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQT 1277
Query: 288 EAAPPAPPVTHS 299
+A P P VT S
Sbjct: 1278 QAFSPPPNVTAS 1289
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 33.9 bits (76), Expect = 0.28
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 218 QLQQVTSPSRPSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQV 277
Q QQ + + I A Q +S S + Q++ +Q+Q QQQ +++ ++QQ
Sbjct: 609 QQQQQQQQQQQQQSSISAQQQQQQQS-------SISAQQQQQQQQQQQQQQQQQQQQQQQ 661
Query: 278 RVSTPSAEKSEAAPPAPPVTHSTPV 302
+ PS++ +++ P P + P+
Sbjct: 662 QQQQPSSQPAQSLPSQPLLRSPLPL 686
Score = 31.2 bits (69), Expect = 1.8
Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 175 LNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIP 234
L+ L +Q P DL+++ + P++E + N+ +P Q Q PS V+P
Sbjct: 526 LDVLMQQKPQ--DLSRSFINNPHPAMEPRQGNT-KPLFHFNSDQANQ----QMPS--VLP 576
Query: 235 ADQDCSSRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSE 288
+ S + + + Q++ +Q+Q QQQ +++ ++QQ + S+ SA++ +
Sbjct: 577 SQNKPSLLHYTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSISAQQQQ 630
>gi|13346498 WW domain containing transcription regulator 1 [Homo
sapiens]
Length = 400
Score = 33.9 bits (76), Expect = 0.28
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 209 RPNMALGHPQLQQVTSPSRPSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQKQLQQQF 268
+PN+ + H Q QQ +PS S P + +A+ ++ Q+KLR +++Q +
Sbjct: 186 QPNLVMNH-QHQQQMAPSTLSQQNHPTQNPPAGLMSMPNALTTQQQQQQKLRLQRIQME- 243
Query: 269 RERMEKQQVRVSTPSAEKSEAAPPAPPVTHSTPVTVSEPLLEKD 312
RER+ +Q + A P V+ P + D
Sbjct: 244 RERIRMRQEELMRQEAALCRQLPMEAETLAPVQAAVNPPTMTPD 287
>gi|31442420 shroom family member 1 [Homo sapiens]
Length = 847
Score = 33.9 bits (76), Expect = 0.28
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 167 LDKDYLRSLNKLPRQLPLEVDLTKAKRQDLEPSVEEARYNSCRPNMALGHPQLQQVTSPS 226
LD DY+R + P P + L + R P A + +P G P + +
Sbjct: 58 LDWDYVRVVWGGPGPAPPDAALCTSPR----PRPAVAARSGPQPTEVPGTPG--PLNRQA 111
Query: 227 RPSHAVIPADQDCSSRSLSS-SAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAE 285
P + A+ + +++++ S S A ++++L+ Q + +++++R+S P A
Sbjct: 112 TPLLYALAAEAEAAAQAVEPPSPPASRAAYRQRLQGAQRRVLRETSFQRKELRMSLP-AR 170
Query: 286 KSEAAPPAPPVTHSTPVTVSEP 307
P PP TH ++S P
Sbjct: 171 LRPTVPARPPATHPRSASLSHP 192
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 33.1 bits (74), Expect = 0.48
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 248 AVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHSTPVTVSEP 307
A ES + Q++ +Q+Q QQQ +++ ++QQ + P PP PP P ++P
Sbjct: 10 AFESLKSFQQQQQQQQQQQQQQQQQQQQQQQPPPPP-------PPPPPPQLPQPPPQAQP 62
Query: 308 LL 309
LL
Sbjct: 63 LL 64
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 33.1 bits (74), Expect = 0.48
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 27/143 (18%)
Query: 186 VDLTKAKRQDLEPSVEEARYNSCR---PNMALGHPQLQQVTSPSRPSHAVIPADQDCSSR 242
V+L K ++ L+ +E R R L +LQ++ + H V+ Q+
Sbjct: 2380 VELEKLRQLRLQEELERERVELQRHREEEQLLVQRELQELQTIK---HHVLQQQQE---E 2433
Query: 243 SLSSSAVESEATHQRKLRQKQ---LQQQFRERMEKQQVRVSTPSAEKSEA---APPA--- 293
+ A++ E Q++L+ +Q LQQQ ++++E+Q+ R P EA PP
Sbjct: 2434 RQAQFALQREQLAQQRLQLEQIQQLQQQLQQQLEEQKQRQKAPFPAACEAPGRGPPLAAA 2493
Query: 294 ---------PPVTHSTPVTVSEP 307
PP+TH+ + ++ P
Sbjct: 2494 ELAQNGQYWPPLTHAAFIAMAGP 2516
Score = 32.0 bits (71), Expect = 1.1
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 8/160 (5%)
Query: 210 PNMALGHPQLQQVTSPSRPSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQKQLQQQFR 269
P+ A G L+Q P P S S +S + S+A+ Q K + +
Sbjct: 544 PHRASGTSPLKQ-KGPQGLGQPSGPLPAKASPLSTKASPLPSKASPQAKPLRASEPSKTP 602
Query: 270 ERMEKQQVRVSTPSAEKSEAAPPAPPVTHSTPVT--VSEPLLEKDFLAGVTQELIKTLE- 326
+++++ RV T K+E P PP T TP T V + + V + + + +
Sbjct: 603 SSVQEKKTRVPT----KAEPMPKPPPETTPTPATPKVKSGVRRAEPATPVVKAVPEAPKG 658
Query: 327 DNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLALNNQMVT 366
+E P + D P S +D +SD ++ + +T
Sbjct: 659 GEAEDLVGKPYSQDASRSPQSLSDTGYSSDGISSSQSEIT 698
>gi|21264616 epidermal growth factor receptor pathway substrate
8-like protein 2 [Homo sapiens]
Length = 715
Score = 33.1 bits (74), Expect = 0.48
Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 18/134 (13%)
Query: 272 MEKQQVRVSTPSAEKSEAAPPA---PPV----THS----TPVTVSEPLLEKDF------- 313
+ +Q +R S + SE PP PPV TH TP + DF
Sbjct: 451 VSRQSIRNSQKHSPTSEPTPPGDALPPVSSPHTHRGYQPTPAMAKYVKILYDFTARNANE 510
Query: 314 LAGVTQELIKTLEDNSEKWAVTPDAGDGVVKPSSRADPAQTSDTLALNNQMVTQNRTPHS 373
L+ + E+++ LED + W + +G P + A+ D A Q + P S
Sbjct: 511 LSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEARPEDAGAPFEQAGQKYWGPAS 570
Query: 374 VCHQKPQAKSGSWD 387
H+ P + G+ D
Sbjct: 571 PTHKLPPSFPGNKD 584
>gi|239756693 PREDICTED: similar to coiled-coil domain containing 92
[Homo sapiens]
Length = 272
Score = 32.7 bits (73), Expect = 0.63
Identities = 54/205 (26%), Positives = 77/205 (37%), Gaps = 30/205 (14%)
Query: 136 ALSLEKARKEAVTDGLKRALRSFGNALGNCILDKDYLRSLNKLPRQLPLEVDLTKAKRQD 195
A + E R+ A + L ALR C L + R L +L R+ L +
Sbjct: 84 AANAELRREVAQREALVSALR--------CSLRTEERRFLEELRRRSHRATVLGT----E 131
Query: 196 LEPSVEEARYNSCRPNMALGHPQLQQVTSPSRPSHAVIPADQDCSSRSLSSSAVESEATH 255
L+ E A Y SC+ H Q++ +P RP PA + R+ A
Sbjct: 132 LQKHTEAAAYLSCQL-----HAARQRLQAP-RPG----PARAQPAQRARGPGVGARLAGV 181
Query: 256 QRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHSTPVTV-------SEPL 308
R R + R S PS+ K A PAPP + + V S PL
Sbjct: 182 TRDGRGGPARDAARSPQAGPGSEGSRPSSRKRGEAAPAPPKSPNRQPFVLPDVSKASSPL 241
Query: 309 LEKDFLAGVTQELIKTLEDN-SEKW 332
L ++FL G + + ED+ S W
Sbjct: 242 LAREFLRGAERGHLLYREDSPSRSW 266
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 32.7 bits (73), Expect = 0.63
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 11/68 (16%)
Query: 252 EATHQRKLRQKQLQQQFRERMEKQQVRVS-------TPSAEKSEA-APPAPPVTHSTPVT 303
EA Q++ Q+QLQQQ ++++++QQ + S PS +K A P P +TP
Sbjct: 3373 EAIQQQQ--QRQLQQQQQQKVQQQQPKASQTPVPPGAPSPDKDPAKESPKPEEQKNTPRE 3430
Query: 304 VSEPLLEK 311
VS PLL K
Sbjct: 3431 VS-PLLPK 3437
Score = 30.8 bits (68), Expect = 2.4
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 252 EATHQRKLRQKQLQQ---QFRERMEK-QQVRVSTPSAEKSEAAPPAPPVTHSTPVTVSEP 307
E HQ KQL++ Q+R+ +K +R TP PP PP+ + P S P
Sbjct: 2003 EHVHQNYFPFKQLERFAKQYRDHYDKLYPLRPQTPEPPPPPPPPPPPPLPAAPPQPASTP 2062
Query: 308 LL 309
+
Sbjct: 2063 AI 2064
>gi|38158015 mastermind-like 3 [Homo sapiens]
Length = 1133
Score = 32.7 bits (73), Expect = 0.63
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 228 PSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKS 287
PS + PA+Q + + ++ Q++ +Q+Q QQQ +++ ++QQ + S ++ S
Sbjct: 458 PSSDMSPAEQ--LKQMAAQQQQRAKLMQQKQQQQQQQQQQQQQQQQQQQQQHSNQTSNWS 515
Query: 288 EAAPPAPP 295
PP+ P
Sbjct: 516 PLGPPSSP 523
Score = 29.3 bits (64), Expect = 6.9
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 211 NMALGHPQLQQVTSPSRPSHAVIPADQDCSSRSLSSSAVESEATHQRKLRQKQLQQQFRE 270
N L +P V + AV +D + + +A + + + +Q+Q QQQ ++
Sbjct: 436 NGYLLNPAAVTVAGSASGPVAVPSSDMSPAEQLKQMAAQQQQRAKLMQQKQQQQQQQQQQ 495
Query: 271 RMEKQQVRVSTPSAEKSEAAPPAPP 295
+ ++QQ + S + S +P PP
Sbjct: 496 QQQQQQQQQQQHSNQTSNWSPLGPP 520
>gi|226442791 runt-related transcription factor 2 isoform b [Homo
sapiens]
Length = 499
Score = 32.3 bits (72), Expect = 0.82
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 253 ATHQRKLRQKQLQQQFRERMEKQQVRVSTPSAEKSEAAPPAPPVTHSTPVTVSEPLLEKD 312
A Q++ +Q+Q QQQ +++ ++QQ + +A + AA A V P + ++E
Sbjct: 47 AAQQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRPPHDNRTMVE-- 104
Query: 313 FLAGVTQELIKTLEDN 328
+A EL++T N
Sbjct: 105 IIADHPAELVRTDSPN 120
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,584,431
Number of Sequences: 37866
Number of extensions: 758834
Number of successful extensions: 4370
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 165
Number of HSP's that attempted gapping in prelim test: 3734
Number of HSP's gapped (non-prelim): 522
length of query: 418
length of database: 18,247,518
effective HSP length: 105
effective length of query: 313
effective length of database: 14,271,588
effective search space: 4467007044
effective search space used: 4467007044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.