Guide to the Human Genome
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Name: RAD52 Sequence: fasta or formatted (418aa) NCBI GI: 109637798
Description:

RAD52 homolog

Referenced in:

DNases, Recombination, and DNA Repair

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         34           2
 C cysteine            1.9          8           1
 D aspartate           5.3         22           1
 E glutamate           6.5         27           2
 F phenylalanine       1.9          8           1
 G glycine             6.9         29           3
 H histidine           2.6         11           1
 I isoleucine          2.2          9           1
 K lysine              6.5         27           2
 L leucine             8.1         34           2
 M methionine          1.7          7           1
 N asparagine          3.8         16           2
 P proline             5.5         23           2
 Q glutamine           7.7         32           3
 R arginine            6.2         26           1
 S serine              9.6         40           3
 T threonine           5.0         21           2
 V valine              6.7         28           2
 W tryptophan          1.0          4           1
 Y tyrosine            2.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAD52 homolog 
HGS                   0.021   hepatocyte growth factor-regulated tyrosine kinase su...
FHOD3                 0.017   formin homology 2 domain containing 3 
RAB11FIP1             0.016   RAB11 family interacting protein 1 isoform 3 
BPTF                  0.015   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.015   bromodomain PHD finger transcription factor isoform ...
AAK1                  0.015   AP2 associated kinase 1 
UACA                  0.013   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.013   uveal autoantigen with coiled-coil domains and ankyr...
CHAF1A                0.012   chromatin assembly factor 1, subunit A (p150) 
TCERG1                0.012   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.012   transcription elongation regulator 1 isoform 1 [Homo...
NOTCH1                0.012   notch1 preproprotein 
SNX2                  0.012   sorting nexin 2 
LOC100128142          0.011   PREDICTED: hypothetical protein 
LOC100128142          0.011   PREDICTED: similar to RIKEN cDNA E130309D14 
RNF216                0.011   ring finger protein 216 isoform b 
RNF216                0.011   ring finger protein 216 isoform a 
FTSJ3                 0.011   FtsJ homolog 3 
NCOA3                 0.011   nuclear receptor coactivator 3 isoform a 
MAML2                 0.011   mastermind-like 2 
WWTR1                 0.011   WW domain containing transcription regulator 1 [Homo...
SHROOM1               0.011   shroom family member 1 
HTT                   0.010   huntingtin 
BSN                   0.010   bassoon protein 
EPS8L2                0.010   epidermal growth factor receptor pathway substrate 8...
LOC100292447          0.010   PREDICTED: similar to coiled-coil domain containing...
ZFHX3                 0.010   AT-binding transcription factor 1 
MAML3                 0.010   mastermind-like 3 
RUNX2                 0.009   runt-related transcription factor 2 isoform b [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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