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Search of human proteins with 109452589
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|109452589 family with sequence similarity 98, member B
isoform 2 [Homo sapiens]
(330 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|109452589 family with sequence similarity 98, member B isofor... 649 0.0
gi|109452587 family with sequence similarity 98, member B isofor... 591 e-169
gi|56699482 hypothetical protein LOC25940 [Homo sapiens] 303 2e-82
gi|116812620 hypothetical protein LOC147965 [Homo sapiens] 143 2e-34
gi|31542634 filamin A interacting protein 1 [Homo sapiens] 40 0.002
gi|169646749 angiopoietin 2 isoform b precursor [Homo sapiens] 38 0.014
gi|4557315 angiopoietin 2 isoform a precursor [Homo sapiens] 38 0.014
gi|169646754 angiopoietin 2 isoform c precursor [Homo sapiens] 37 0.019
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 35 0.071
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 35 0.071
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 35 0.071
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 35 0.071
gi|101943240 general transcription factor IIIC, polypeptide 1, a... 35 0.071
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 34 0.21
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 34 0.21
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 34 0.21
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 34 0.21
gi|57242774 hypothetical protein LOC9703 [Homo sapiens] 33 0.35
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 33 0.35
gi|4503179 oral-facial-digital syndrome 1 [Homo sapiens] 32 0.60
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 32 0.78
gi|188528616 testis specific, 10 [Homo sapiens] 32 1.0
gi|13376858 testis specific, 10 [Homo sapiens] 32 1.0
gi|89353283 serologically defined colon cancer antigen 3 isoform... 32 1.0
gi|89353281 serologically defined colon cancer antigen 3 isoform... 32 1.0
gi|89353278 serologically defined colon cancer antigen 3 isoform... 32 1.0
gi|12597633 RAN binding protein 17 [Homo sapiens] 32 1.0
gi|217272804 hyaluronan-mediated motility receptor isoform d [Ho... 31 1.7
gi|217272802 hyaluronan-mediated motility receptor isoform a [Ho... 31 1.7
gi|217416398 hyaluronan-mediated motility receptor isoform c [Ho... 31 1.7
>gi|109452589 family with sequence similarity 98, member B isoform 2
[Homo sapiens]
Length = 330
Score = 649 bits (1675), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Query: 1 MRGPEPGPQPTMEGDVLDTLEALGYKGPLLEEQALTKAAEGGLSSPEFSELCIWLGSQIK 60
MRGPEPGPQPTMEGDVLDTLEALGYKGPLLEEQALTKAAEGGLSSPEFSELCIWLGSQIK
Sbjct: 1 MRGPEPGPQPTMEGDVLDTLEALGYKGPLLEEQALTKAAEGGLSSPEFSELCIWLGSQIK 60
Query: 61 SLCNLEESITSAGRDDLESFQLEISGFLKEMACPYSVLISGDIKDRLKKKEDCLKLLLFL 120
SLCNLEESITSAGRDDLESFQLEISGFLKEMACPYSVLISGDIKDRLKKKEDCLKLLLFL
Sbjct: 61 SLCNLEESITSAGRDDLESFQLEISGFLKEMACPYSVLISGDIKDRLKKKEDCLKLLLFL 120
Query: 121 STELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKSTTSDIPHMLNQVESKVKD 180
STELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKSTTSDIPHMLNQVESKVKD
Sbjct: 121 STELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKSTTSDIPHMLNQVESKVKD 180
Query: 181 ILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCEYECRRRMLMKRLDVTVQSFGWSD 240
ILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCEYECRRRMLMKRLDVTVQSFGWSD
Sbjct: 181 ILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCEYECRRRMLMKRLDVTVQSFGWSD 240
Query: 241 RAKVKTDDIARIYQPKRYALSPKTTITMAHLLAAREDLSKIIRTSSGTSREKTACAINKV 300
RAKVKTDDIARIYQPKRYALSPKTTITMAHLLAAREDLSKIIRTSSGTSREKTACAINKV
Sbjct: 241 RAKVKTDDIARIYQPKRYALSPKTTITMAHLLAAREDLSKIIRTSSGTSREKTACAINKV 300
Query: 301 GVSFSTVENELMISYLMFLQILVYFSFMSW 330
GVSFSTVENELMISYLMFLQILVYFSFMSW
Sbjct: 301 GVSFSTVENELMISYLMFLQILVYFSFMSW 330
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 591 bits (1523), Expect = e-169
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MRGPEPGPQPTMEGDVLDTLEALGYKGPLLEEQALTKAAEGGLSSPEFSELCIWLGSQIK 60
MRGPEPGPQPTMEGDVLDTLEALGYKGPLLEEQALTKAAEGGLSSPEFSELCIWLGSQIK
Sbjct: 1 MRGPEPGPQPTMEGDVLDTLEALGYKGPLLEEQALTKAAEGGLSSPEFSELCIWLGSQIK 60
Query: 61 SLCNLEESITSAGRDDLESFQLEISGFLKEMACPYSVLISGDIKDRLKKKEDCLKLLLFL 120
SLCNLEESITSAGRDDLESFQLEISGFLKEMACPYSVLISGDIKDRLKKKEDCLKLLLFL
Sbjct: 61 SLCNLEESITSAGRDDLESFQLEISGFLKEMACPYSVLISGDIKDRLKKKEDCLKLLLFL 120
Query: 121 STELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKSTTSDIPHMLNQVESKVKD 180
STELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKSTTSDIPHMLNQVESKVKD
Sbjct: 121 STELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKSTTSDIPHMLNQVESKVKD 180
Query: 181 ILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCEYECRRRMLMKRLDVTVQSFGWSD 240
ILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCEYECRRRMLMKRLDVTVQSFGWSD
Sbjct: 181 ILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCEYECRRRMLMKRLDVTVQSFGWSD 240
Query: 241 RAKVKTDDIARIYQPKRYALSPKTTITMAHLLAAREDLSKIIRTSSGTSREKTACAINKV 300
RAKVKTDDIARIYQPKRYALSPKTTITMAHLLAAREDLSKIIRTSSGTSREKTACAINKV
Sbjct: 241 RAKVKTDDIARIYQPKRYALSPKTTITMAHLLAAREDLSKIIRTSSGTSREKTACAINKV 300
>gi|56699482 hypothetical protein LOC25940 [Homo sapiens]
Length = 518
Score = 303 bits (775), Expect = 2e-82
Identities = 158/292 (54%), Positives = 215/292 (73%), Gaps = 3/292 (1%)
Query: 12 MEGDVLDTLEALGYKGPLLEEQALTKAAEGGLSSPEFSELCIWLGSQIKSLCNLEESITS 71
ME D+L++LE LGYKGPLLE+ AL++A G SSPEF++LC WL S+++ LC LEE++ +
Sbjct: 6 METDILESLEDLGYKGPLLEDGALSQAVSAGASSPEFTKLCAWLVSELRVLCKLEENVQA 65
Query: 72 AGR-DDLESFQLEISGFLKEMACPYSVLISGDIKDRLKKKEDCLKLLLFLSTELQASQIL 130
+ E FQLE+SG L EM CPY L SGD+ RL +++CL LL +L +EL+A+++L
Sbjct: 66 TNSPSEAEEFQLEVSGLLGEMNCPYLSLTSGDVTKRLLIQKNCLLLLTYLISELEAARML 125
Query: 131 -QNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKSTTS-DIPHMLNQVESKVKDILSKVQKN 188
N K +Q SEV+QE++ + LG+ K + + + +E K+K+ L+KV N
Sbjct: 126 CVNAPPKKAQEGGGSEVFQELKGICIALGMSKPPANITMFQFFSGIEKKLKETLAKVPPN 185
Query: 189 HVGKPLLKMDLNSEQAEQLERINDALSCEYECRRRMLMKRLDVTVQSFGWSDRAKVKTDD 248
HVGKPLLK + E++E IN A++ EYE RR++L+KRLDVTVQSFGWSDRAK +T+
Sbjct: 186 HVGKPLLKKPMGPAHWEKIEAINQAIANEYEVRRKLLIKRLDVTVQSFGWSDRAKSQTEK 245
Query: 249 IARIYQPKRYALSPKTTITMAHLLAAREDLSKIIRTSSGTSREKTACAINKV 300
+A++YQPKR LSPKTTI++AHLLAAR+DLSKI+RTSSG+ REKTACAINKV
Sbjct: 246 LAKVYQPKRSVLSPKTTISVAHLLAARQDLSKILRTSSGSIREKTACAINKV 297
>gi|116812620 hypothetical protein LOC147965 [Homo sapiens]
Length = 349
Score = 143 bits (360), Expect = 2e-34
Identities = 96/303 (31%), Positives = 160/303 (52%), Gaps = 27/303 (8%)
Query: 16 VLDTLEALGYKGPLLEEQALTKAAEGGLSSPEFSELCIWLGSQIKSLCNLEESITSAGRD 75
V L ALGY G + AA G S P+F LC+ L +++ +L LE+ AG +
Sbjct: 14 VAQDLLALGYGG-------VPGAASRGASCPDFRGLCVRLAAELATLGALEQQ-REAGAE 65
Query: 76 DL---------ESFQLEISGFLKEMACPYSVLISGDIKDRLKKKEDCLKLLLFLSTELQA 126
L E F ++ L+E+ CP L GD L++ L+LL FL +ELQA
Sbjct: 66 VLSAGDGPGAEEDFLRQLGSLLRELHCPDRALCGGDGAAALREPGAGLRLLRFLCSELQA 125
Query: 127 SQIL--------QNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKSTT-SDIPHMLNQVESK 177
+++L + + + + + QE+ LG+P+ + +L ++ +K
Sbjct: 126 TRLLCLRSLLDPSPRPPLGEGVVEGAGMVQELDLTLQALGLPRPAPGTPASQLLQELHAK 185
Query: 178 VKDILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCEYECRRRMLMKRLDVTVQSFG 237
+ ++ + + +PLL L++ + E LE ++ +L +Y CRR +L+KRLD+T +F
Sbjct: 186 ISELQPSLPPGSL-QPLLSCSLDAPRWEALESLSQSLRDQYRCRRCLLLKRLDLTTSAFH 244
Query: 238 WSDRAKVKTDDIARIYQPKRYALSPKTTITMAHLLAAREDLSKIIRTSSGTSREKTACAI 297
WSDRA+ + + + + P R L+P++ I++AH+LAAR DLS ++ +S R T CAI
Sbjct: 245 WSDRAEAQGEAMRAVLIPIREVLTPESDISIAHVLAARADLSCLVPATSVAVRRGTCCAI 304
Query: 298 NKV 300
NKV
Sbjct: 305 NKV 307
>gi|31542634 filamin A interacting protein 1 [Homo sapiens]
Length = 1213
Score = 40.4 bits (93), Expect = 0.002
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 100 SGDIKDRLKKKEDCLKLLLFLSTELQASQILQNKKHKNSQLDKNSEV-------YQEVQA 152
S D + L+++ + LK LL QA + +N K N D+ ++ E Q
Sbjct: 197 SDDFTNLLEQERERLKKLLEQEKAYQARKEKENAKRLNKLRDELVKLKSFALMLVDERQM 256
Query: 153 MFDTLGIPKSTTSDIPHMLNQVESKVKDILSKVQKNHVGKPLLKMDLNSEQ-----AEQL 207
+ LG+ D+ L + E K+K I SK +++ + LLK++++ E +++
Sbjct: 257 HIEQLGLQSQKVQDLTQKLREEEEKLKAITSKSKEDR--QKLLKLEVDFEHKASRFSQEH 314
Query: 208 ERINDALSCEYECRRRMLMKRLDVT 232
E +N L+ + R++ +K + +T
Sbjct: 315 EEMNAKLANQESHNRQLRLKLVGLT 339
>gi|169646749 angiopoietin 2 isoform b precursor [Homo sapiens]
Length = 495
Score = 37.7 bits (86), Expect = 0.014
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 102 DIKDRLKKKEDCLKLLLF---LSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLG 158
D++ ++ + L+L L LST QIL N DKNS + ++V AM D
Sbjct: 144 DVEAQVLNQTTRLELQLLEHSLSTNKLEKQILDQTSEINKLQDKNSFLEKKVLAMEDKHI 203
Query: 159 IPKSTTSDIPHMLNQVESKVKDILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALS 215
I + + L + SK I+ +++K V + L +Q + +E +N+ L+
Sbjct: 204 IQLQSIKEEKDQLQVLVSKQNSIIEELEKKIVTATVNNSVLQKQQHDLMETVNNLLT 260
>gi|4557315 angiopoietin 2 isoform a precursor [Homo sapiens]
Length = 496
Score = 37.7 bits (86), Expect = 0.014
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 102 DIKDRLKKKEDCLKLLLF---LSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLG 158
D++ ++ + L+L L LST QIL N DKNS + ++V AM D
Sbjct: 144 DVEAQVLNQTTRLELQLLEHSLSTNKLEKQILDQTSEINKLQDKNSFLEKKVLAMEDKHI 203
Query: 159 IPKSTTSDIPHMLNQVESKVKDILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALS 215
I + + L + SK I+ +++K V + L +Q + +E +N+ L+
Sbjct: 204 IQLQSIKEEKDQLQVLVSKQNSIIEELEKKIVTATVNNSVLQKQQHDLMETVNNLLT 260
>gi|169646754 angiopoietin 2 isoform c precursor [Homo sapiens]
Length = 444
Score = 37.4 bits (85), Expect = 0.019
Identities = 27/96 (28%), Positives = 44/96 (45%)
Query: 120 LSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKSTTSDIPHMLNQVESKVK 179
LST QIL N DKNS + ++V AM D I + + L + SK
Sbjct: 113 LSTNKLEKQILDQTSEINKLQDKNSFLEKKVLAMEDKHIIQLQSIKEEKDQLQVLVSKQN 172
Query: 180 DILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALS 215
I+ +++K V + L +Q + +E +N+ L+
Sbjct: 173 SIIEELEKKIVTATVNNSVLQKQQHDLMETVNNLLT 208
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 35.4 bits (80), Expect = 0.071
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 103 IKDRLKKKEDCLKLLLFLSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGI--- 159
++D KKKED + FL +++ ++ Q+KK +NS N E QE + + + L
Sbjct: 284 LEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVENS----NKEEIQEKETIIEELNTKII 339
Query: 160 -PKSTTSDIPHMLNQVESKVKDILSK-VQKNHVGKPLLKMDLNSEQAEQ--LERINDALS 215
+ T ++ L + + ++ + VQKN K + NS+Q E+ E I +
Sbjct: 340 EEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMG 399
Query: 216 CEYECRRR 223
E ++R
Sbjct: 400 TVEELQKR 407
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 35.4 bits (80), Expect = 0.071
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 103 IKDRLKKKEDCLKLLLFLSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGI--- 159
++D KKKED + FL +++ ++ Q+KK +NS N E QE + + + L
Sbjct: 284 LEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVENS----NKEEIQEKETIIEELNTKII 339
Query: 160 -PKSTTSDIPHMLNQVESKVKDILSK-VQKNHVGKPLLKMDLNSEQAEQ--LERINDALS 215
+ T ++ L + + ++ + VQKN K + NS+Q E+ E I +
Sbjct: 340 EEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMG 399
Query: 216 CEYECRRR 223
E ++R
Sbjct: 400 TVEELQKR 407
Score = 32.0 bits (71), Expect = 0.78
Identities = 38/194 (19%), Positives = 94/194 (48%), Gaps = 15/194 (7%)
Query: 30 LEEQALTKAAEGGLSSPEFSELCIWLGSQIKSLCNLEESITSAGRDDLESFQLEISGFLK 89
L+EQA+ + E + E +L Q+K + + I+ ++E +++ LK
Sbjct: 2069 LDEQAIDREHERDVFQQEIQKL----EQQLKVVPRFQP-ISEHQTREVE----QLANHLK 2119
Query: 90 EMA--CPYSVLISGDIKDRLKKKEDCLKLLLFLSTELQASQILQNKKHKNSQLDKNSEVY 147
E C +L ++ ++++ + ++ L F EL+ + +++++KH + ++ E+
Sbjct: 2120 EKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVEDRKHFGA-VEAKPELS 2178
Query: 148 QEV--QAMFDTLGIPKSTTSDIPHMLNQVESKVKDILSKVQKNHVGKPLLKMDLNSEQAE 205
EV QA D + + +++ L Q ++++ +VQ+ H+ + K + ++ + +
Sbjct: 2179 LEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKE-STTRLQ 2237
Query: 206 QLERINDALSCEYE 219
+LE+ N + E
Sbjct: 2238 ELEQENKLFKDDME 2251
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 35.4 bits (80), Expect = 0.071
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 10/170 (5%)
Query: 18 DTLEALGYKGPLLEEQALTKAAEGGLSSP---EFSELCIWLGSQIKSLCNLEESITSAGR 74
++L+ L +G LL E+ EG L S L +++S C + A
Sbjct: 2579 ESLDKLSQRGQLLSEEGHGAGQEGRLCSQLLTSHQNLLRMTKEKLRS-CQVALQEHEALE 2637
Query: 75 DDLESFQLEISGFLKEMACPYSVLISGDIKDRLKKKEDCLKLLLFLSTELQASQILQNKK 134
+ L+S + +AC S L S KD L+K+ ++ +L + E + + K
Sbjct: 2638 EALQSMWFWVKAIQDRLACAESTLGS---KDTLEKRLSQIQDILLMKGEGEVKLNMAIGK 2694
Query: 135 HKNSQLDKNSEVYQEVQAMFDTLGIPKSTTSDIPHMLNQVESKVKDILSK 184
+ + N E + +Q +TL K +DI +S ++ ++S+
Sbjct: 2695 GEQALRSSNKEGQRVIQTQLETL---KEVWADIMSSSVHAQSTLESVISQ 2741
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 35.4 bits (80), Expect = 0.071
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 10/170 (5%)
Query: 18 DTLEALGYKGPLLEEQALTKAAEGGLSSP---EFSELCIWLGSQIKSLCNLEESITSAGR 74
++L+ L +G LL E+ EG L S L +++S C + A
Sbjct: 2572 ESLDKLSQRGQLLSEEGHGAGQEGRLCSQLLTSHQNLLRMTKEKLRS-CQVALQEHEALE 2630
Query: 75 DDLESFQLEISGFLKEMACPYSVLISGDIKDRLKKKEDCLKLLLFLSTELQASQILQNKK 134
+ L+S + +AC S L S KD L+K+ ++ +L + E + + K
Sbjct: 2631 EALQSMWFWVKAIQDRLACAESTLGS---KDTLEKRLSQIQDILLMKGEGEVKLNMAIGK 2687
Query: 135 HKNSQLDKNSEVYQEVQAMFDTLGIPKSTTSDIPHMLNQVESKVKDILSK 184
+ + N E + +Q +TL K +DI +S ++ ++S+
Sbjct: 2688 GEQALRSSNKEGQRVIQTQLETL---KEVWADIMSSSVHAQSTLESVISQ 2734
>gi|101943240 general transcription factor IIIC, polypeptide 1, alpha
220kDa [Homo sapiens]
Length = 2109
Score = 35.4 bits (80), Expect = 0.071
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 65 LEESITSAGRDDLESFQLEISGFLKEMACPYSVLISGDIKDRLKKKEDCLKL----LLFL 120
L+E +SA L + LEI L+E+ Y VL GD KD+ +K+++ + L L
Sbjct: 1374 LKEKFSSA----LRNSNLEIPDTLQELFARYRVLAIGDEKDQTRKEDELNSVDDIHFLVL 1429
Query: 121 STELQASQILQNKKHKNSQLDKNSEVYQE 149
+Q++ L + + K+ Q + +Y+E
Sbjct: 1430 QNLIQSTLALSDSQMKSYQSFQTFRLYRE 1458
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 33.9 bits (76), Expect = 0.21
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Query: 104 KDRLKKKEDCLKLLLFLSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKST 163
K+R +K E+ LK L E + SQ+ + K QL +E+Y E + M L K
Sbjct: 865 KERQQKAENELKEL-----EQKHSQLTEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQE 919
Query: 164 TSDIPHMLNQVESKVKDILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCE 217
+I H + + +D ++Q +DL EQ E+ E L E
Sbjct: 920 LEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDL-EEQLEEEEAARQKLQLE 972
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 33.9 bits (76), Expect = 0.21
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Query: 104 KDRLKKKEDCLKLLLFLSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKST 163
K+R +K E+ LK L E + SQ+ + K QL +E+Y E + M L K
Sbjct: 872 KERQQKAENELKEL-----EQKHSQLTEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQE 926
Query: 164 TSDIPHMLNQVESKVKDILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCE 217
+I H + + +D ++Q +DL EQ E+ E L E
Sbjct: 927 LEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDL-EEQLEEEEAARQKLQLE 979
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 33.9 bits (76), Expect = 0.21
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Query: 104 KDRLKKKEDCLKLLLFLSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKST 163
K+R +K E+ LK L E + SQ+ + K QL +E+Y E + M L K
Sbjct: 872 KERQQKAENELKEL-----EQKHSQLTEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQE 926
Query: 164 TSDIPHMLNQVESKVKDILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCE 217
+I H + + +D ++Q +DL EQ E+ E L E
Sbjct: 927 LEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDL-EEQLEEEEAARQKLQLE 979
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 33.9 bits (76), Expect = 0.21
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Query: 104 KDRLKKKEDCLKLLLFLSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKST 163
K+R +K E+ LK L E + SQ+ + K QL +E+Y E + M L K
Sbjct: 865 KERQQKAENELKEL-----EQKHSQLTEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQE 919
Query: 164 TSDIPHMLNQVESKVKDILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCE 217
+I H + + +D ++Q +DL EQ E+ E L E
Sbjct: 920 LEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDL-EEQLEEEEAARQKLQLE 972
>gi|57242774 hypothetical protein LOC9703 [Homo sapiens]
Length = 2235
Score = 33.1 bits (74), Expect = 0.35
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 23/162 (14%)
Query: 79 SFQLEISGFLKEMACPYSVLISGDIKDRLKKKEDCLKLLLFLSTELQAS----------Q 128
S+ +I L P VL + + +D LKK+E + + EL+ S
Sbjct: 1715 SYSHDIDPELATQIKPPEVLENQEKEDLLKKQEGAVDTFTLIHHELEISTNPAQYAMILD 1774
Query: 129 ILQN-KKHKNSQLDKNSEVYQEVQAMFDTLGIPKSTTSDIPHM----------LNQVESK 177
I+ N H + ++SE Q V+ + P+ S I H+ + Q+E +
Sbjct: 1775 IVNNLLLHVEPKRKEHSEKKQRVRFQLEISSNPEEQRSSILHLQEAVRQHVAQIRQLEKQ 1834
Query: 178 VKDILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCEYE 219
+ I+ +Q + + LL DLN + QL + L E E
Sbjct: 1835 MYSIMKSLQDDSKNENLL--DLNQKLQLQLNQEKANLQLESE 1874
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 33.1 bits (74), Expect = 0.35
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 18/86 (20%)
Query: 102 DIKDRLKKKEDCLKLLLFLSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPK 161
D++ +L + E+ LK + STELQ QLDK + +QE QA + +
Sbjct: 457 DLQLKLSRLEEQLKEKVTNSTELQ------------HQLDKTKQQHQEQQA------LQQ 498
Query: 162 STTSDIPHMLNQVESKVKDILSKVQK 187
STT+ + N +E ++ I K QK
Sbjct: 499 STTAKLREAQNDLEQVLRQIGDKDQK 524
>gi|4503179 oral-facial-digital syndrome 1 [Homo sapiens]
Length = 1012
Score = 32.3 bits (72), Expect = 0.60
Identities = 41/201 (20%), Positives = 85/201 (42%), Gaps = 14/201 (6%)
Query: 58 QIKSLCNLEESITSAGRDDLESFQLEISGFLKEMACPYSVLISG----------DIKDRL 107
Q K CN+E +S D + +L++ A P + +I+++L
Sbjct: 152 QAKESCNMETQTSSTFNRDSLAEKLQLIDDQFADAYPQRIKFESLEIKLNEYKREIEEQL 211
Query: 108 KKKEDCLKLLLFLSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKSTTSDI 167
+ E C KL F TE+ ++ KK++ ++ + QA + L + + +T +
Sbjct: 212 RA-EMCQKLKFFKDTEIAKIKMEAKKKYEKELTMFQNDFEKACQAKSEALVLREKSTLER 270
Query: 168 PHMLNQVESKVKDILSKVQKNHVGKPLLK-MDLNSEQAEQLERINDALSCEYECRRRMLM 226
H ++E+ K+I ++ Q LL+ + +Q + +N L E +
Sbjct: 271 IHKHQEIET--KEIYAQRQLLLKDMDLLRGREAELKQRVEAFELNQKLQEEKHKSITEAL 328
Query: 227 KRLDVTVQSFGWSDRAKVKTD 247
+R + ++SF + K+K +
Sbjct: 329 RRQEQNIKSFEETYDRKLKNE 349
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 32.0 bits (71), Expect = 0.78
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 102 DIKDRLKKKEDCLKLLLFLSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPK 161
D+K+RLK ++ + T L+ S L +K ++ KN EV + A F T + K
Sbjct: 950 DLKERLKTSTSNVEQYQAMVTSLEES--LNKEKQVTEEVRKNIEVRLKESAEFQTQ-LEK 1006
Query: 162 STTSDIPHMLNQVESKVKDILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCEYECR 221
+ K + I S Q+ K L + +E E L+R + ALS E + R
Sbjct: 1007 KLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLS-SVQNEVQEALQRASTALSNEQQAR 1065
Query: 222 R 222
R
Sbjct: 1066 R 1066
>gi|188528616 testis specific, 10 [Homo sapiens]
Length = 698
Score = 31.6 bits (70), Expect = 1.0
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 161 KSTTSDIPHMLNQVESKVKDILSKVQKNHVGKPLLKMDLNSEQA------EQLERIN-DA 213
K + LN +++ DI KVQ ++ LK L SE++ EQL + N DA
Sbjct: 365 KQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQMMEQLRKANEDA 424
Query: 214 LSCEYECRR----RMLMKRLDVTVQSFGWSDRAKVKTDDIAR-IYQPKRYALSPKTTITM 268
+ E + R+ +K +T ++ G +R K K D + R + Q S K+ I+
Sbjct: 425 ENWENKARQSEADNNTLKLELITAEAEG--NRLKEKVDSLNREVEQHLNAERSYKSQIST 482
Query: 269 AH--LLAAREDLSKI 281
H ++ E+L K+
Sbjct: 483 LHKSVVKMEEELQKV 497
>gi|13376858 testis specific, 10 [Homo sapiens]
Length = 698
Score = 31.6 bits (70), Expect = 1.0
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 161 KSTTSDIPHMLNQVESKVKDILSKVQKNHVGKPLLKMDLNSEQA------EQLERIN-DA 213
K + LN +++ DI KVQ ++ LK L SE++ EQL + N DA
Sbjct: 365 KQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQMMEQLRKANEDA 424
Query: 214 LSCEYECRR----RMLMKRLDVTVQSFGWSDRAKVKTDDIAR-IYQPKRYALSPKTTITM 268
+ E + R+ +K +T ++ G +R K K D + R + Q S K+ I+
Sbjct: 425 ENWENKARQSEADNNTLKLELITAEAEG--NRLKEKVDSLNREVEQHLNAERSYKSQIST 482
Query: 269 AH--LLAAREDLSKI 281
H ++ E+L K+
Sbjct: 483 LHKSVVKMEEELQKV 497
>gi|89353283 serologically defined colon cancer antigen 3 isoform 3
[Homo sapiens]
Length = 362
Score = 31.6 bits (70), Expect = 1.0
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 161 KSTTSDIPHMLNQVESKVKDILSKVQK--NHVGKPLLKMDLNSEQAEQLERINDALSCEY 218
+S D+ ++ QVE ++ + + K NHV K ++ L Q +R N+AL C
Sbjct: 241 ESDYHDLESVVQQVEQNLELMTKRAVKAENHVVKLKQEISLLQAQVSNFQRENEALRCGQ 300
Query: 219 ECRRRMLMKRLDVTVQS 235
++ + DV +Q+
Sbjct: 301 GASLTVVKQNADVALQN 317
>gi|89353281 serologically defined colon cancer antigen 3 isoform 1
[Homo sapiens]
Length = 435
Score = 31.6 bits (70), Expect = 1.0
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 161 KSTTSDIPHMLNQVESKVKDILSKVQK--NHVGKPLLKMDLNSEQAEQLERINDALSCEY 218
+S D+ ++ QVE ++ + + K NHV K ++ L Q +R N+AL C
Sbjct: 314 ESDYHDLESVVQQVEQNLELMTKRAVKAENHVVKLKQEISLLQAQVSNFQRENEALRCGQ 373
Query: 219 ECRRRMLMKRLDVTVQS 235
++ + DV +Q+
Sbjct: 374 GASLTVVKQNADVALQN 390
>gi|89353278 serologically defined colon cancer antigen 3 isoform 2
[Homo sapiens]
Length = 412
Score = 31.6 bits (70), Expect = 1.0
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 161 KSTTSDIPHMLNQVESKVKDILSKVQK--NHVGKPLLKMDLNSEQAEQLERINDALSCEY 218
+S D+ ++ QVE ++ + + K NHV K ++ L Q +R N+AL C
Sbjct: 291 ESDYHDLESVVQQVEQNLELMTKRAVKAENHVVKLKQEISLLQAQVSNFQRENEALRCGQ 350
Query: 219 ECRRRMLMKRLDVTVQS 235
++ + DV +Q+
Sbjct: 351 GASLTVVKQNADVALQN 367
>gi|12597633 RAN binding protein 17 [Homo sapiens]
Length = 1088
Score = 31.6 bits (70), Expect = 1.0
Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 40/224 (17%)
Query: 28 PLLEEQALTKAAEGG------LSSPEFSELCIWLGSQIKSLCNLEESITSAGRDDLESFQ 81
PLL + AL+ + +SPE ++ +LG+ IK + + E+ G D ++
Sbjct: 273 PLLSQLALSCLVQFASTRRSLFNSPERAK---YLGNLIKGVKRILEN--PQGLSDPGNYH 327
Query: 82 LEISGFLKEMACPYSVLISGDIKDRLKKKEDCLKLLL-FLSTELQASQILQNKKHKNSQL 140
E FL + Y + G++ +K+ + ++L+ F T LQ + N H L
Sbjct: 328 -EFCRFLARLKTNYQL---GELV-MVKEYPEVIRLIANFTITSLQHWEFAPNSVHYLLTL 382
Query: 141 DKNSEVYQEVQAMFDTLGIPKSTTSDIPHMLNQVESKVK--------DILSKVQKNHVGK 192
Q M ++ KST PH+L+ ++ D ++ V ++H+
Sbjct: 383 ---------WQRMVASVPFVKSTE---PHLLDTYAPEITKAFITSRLDSVAIVVRDHLDD 430
Query: 193 PLLKMDLNSEQAEQLERINDALSCEYECRRRMLMKRLDVTVQSF 236
PL D + +QLE++ CEYE +L++ D Q++
Sbjct: 431 PL---DDTATVFQQLEQLCTVSRCEYEKTCALLVQLFDQNAQNY 471
>gi|217272804 hyaluronan-mediated motility receptor isoform d [Homo
sapiens]
Length = 638
Score = 30.8 bits (68), Expect = 1.7
Identities = 28/130 (21%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 104 KDRLKKKEDCLKLLLFLSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKST 163
K+++ +K + KLL ++ AS ++ K +QL++N + + + L + +S
Sbjct: 135 KEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLEENLKEKND-----EILSLKQSL 189
Query: 164 TSDIPHMLNQVES-KVK-DILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCEYECR 221
+I + QVE VK +L K +++HV + + N +++ + E + R
Sbjct: 190 EENIVILSKQVEDLNVKCQLLEKEKEDHVNR---NREHNENLNAEMQNLKQKFILEQQER 246
Query: 222 RRMLMKRLDV 231
++ K L +
Sbjct: 247 EKLQQKELQI 256
>gi|217272802 hyaluronan-mediated motility receptor isoform a [Homo
sapiens]
Length = 725
Score = 30.8 bits (68), Expect = 1.7
Identities = 28/130 (21%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 104 KDRLKKKEDCLKLLLFLSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKST 163
K+++ +K + KLL ++ AS ++ K +QL++N + + + L + +S
Sbjct: 222 KEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLEENLKEKND-----EILSLKQSL 276
Query: 164 TSDIPHMLNQVES-KVK-DILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCEYECR 221
+I + QVE VK +L K +++HV + + N +++ + E + R
Sbjct: 277 EENIVILSKQVEDLNVKCQLLEKEKEDHVNR---NREHNENLNAEMQNLKQKFILEQQER 333
Query: 222 RRMLMKRLDV 231
++ K L +
Sbjct: 334 EKLQQKELQI 343
>gi|217416398 hyaluronan-mediated motility receptor isoform c [Homo
sapiens]
Length = 709
Score = 30.8 bits (68), Expect = 1.7
Identities = 28/130 (21%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 104 KDRLKKKEDCLKLLLFLSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKST 163
K+++ +K + KLL ++ AS ++ K +QL++N + + + L + +S
Sbjct: 206 KEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLEENLKEKND-----EILSLKQSL 260
Query: 164 TSDIPHMLNQVES-KVK-DILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCEYECR 221
+I + QVE VK +L K +++HV + + N +++ + E + R
Sbjct: 261 EENIVILSKQVEDLNVKCQLLEKEKEDHVNR---NREHNENLNAEMQNLKQKFILEQQER 317
Query: 222 RRMLMKRLDV 231
++ K L +
Sbjct: 318 EKLQQKELQI 327
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,495,360
Number of Sequences: 37866
Number of extensions: 474930
Number of successful extensions: 1791
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1748
Number of HSP's gapped (non-prelim): 101
length of query: 330
length of database: 18,247,518
effective HSP length: 103
effective length of query: 227
effective length of database: 14,347,320
effective search space: 3256841640
effective search space used: 3256841640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.