Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 142976884
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|142976884 phospholipase A2, group III precursor [Homo
sapiens]
(509 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|142976884 phospholipase A2, group III precursor [Homo sapiens] 1089 0.0
gi|22748973 protein interacting with cyclin A1 [Homo sapiens] 57 4e-08
gi|134254450 patched isoform S [Homo sapiens] 39 0.015
gi|134254435 patched isoform S [Homo sapiens] 39 0.015
gi|134254468 patched isoform S [Homo sapiens] 39 0.015
gi|134254452 patched isoform S [Homo sapiens] 39 0.015
gi|134254432 patched isoform L' [Homo sapiens] 39 0.015
gi|134254466 patched isoform M [Homo sapiens] 39 0.015
gi|134254446 patched isoform L [Homo sapiens] 39 0.015
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 37 0.043
gi|239753698 PREDICTED: hypothetical protein [Homo sapiens] 35 0.21
gi|239748278 PREDICTED: hypothetical protein [Homo sapiens] 35 0.21
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens] 35 0.21
gi|239753975 PREDICTED: hypothetical protein [Homo sapiens] 34 0.28
gi|108860690 chromosome 16 open reading frame 7 [Homo sapiens] 34 0.28
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 34 0.36
gi|239750954 PREDICTED: hypothetical protein XP_002347616 [Homo ... 33 0.61
gi|239745360 PREDICTED: hypothetical protein XP_002343446 [Homo ... 33 0.61
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 33 0.61
gi|150170670 piccolo isoform 2 [Homo sapiens] 33 0.80
gi|150378539 piccolo isoform 1 [Homo sapiens] 33 0.80
gi|116063558 tet oncogene family member 2 isoform b [Homo sapiens] 32 1.0
gi|187761317 tet oncogene family member 2 isoform a [Homo sapiens] 32 1.0
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 32 1.0
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 32 1.0
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 32 1.4
gi|33359694 ubiquitin-conjugating enzyme E2E 3 [Homo sapiens] 32 1.4
gi|5454146 ubiquitin-conjugating enzyme E2E 3 [Homo sapiens] 32 1.4
gi|57863314 vacuolar protein sorting 37C [Homo sapiens] 32 1.4
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 1.4
>gi|142976884 phospholipase A2, group III precursor [Homo sapiens]
Length = 509
Score = 1089 bits (2816), Expect = 0.0
Identities = 509/509 (100%), Positives = 509/509 (100%)
Query: 1 MGVQAGLFGMLGFLGVALGGSPALRWYRTSCHLTKAVPGNPLGYLSFLAKDAQGLALIHA 60
MGVQAGLFGMLGFLGVALGGSPALRWYRTSCHLTKAVPGNPLGYLSFLAKDAQGLALIHA
Sbjct: 1 MGVQAGLFGMLGFLGVALGGSPALRWYRTSCHLTKAVPGNPLGYLSFLAKDAQGLALIHA 60
Query: 61 RWDAHRRLQSCSWEDEPELTAAYGALCAHETAWGSFIHTPGPELQRALATLQSQWEACRA 120
RWDAHRRLQSCSWEDEPELTAAYGALCAHETAWGSFIHTPGPELQRALATLQSQWEACRA
Sbjct: 61 RWDAHRRLQSCSWEDEPELTAAYGALCAHETAWGSFIHTPGPELQRALATLQSQWEACRA 120
Query: 121 LEESPAGARKKRAAGQSGVPGGGHQREKRGWTMPGTLWCGVGDSAGNSSELGVFQGPDLC 180
LEESPAGARKKRAAGQSGVPGGGHQREKRGWTMPGTLWCGVGDSAGNSSELGVFQGPDLC
Sbjct: 121 LEESPAGARKKRAAGQSGVPGGGHQREKRGWTMPGTLWCGVGDSAGNSSELGVFQGPDLC 180
Query: 181 CREHDRCPQNISPLQYNYGIRNYRFHTISHCDCDTRFQQCLQNQHDSISDIVGVAFFNVL 240
CREHDRCPQNISPLQYNYGIRNYRFHTISHCDCDTRFQQCLQNQHDSISDIVGVAFFNVL
Sbjct: 181 CREHDRCPQNISPLQYNYGIRNYRFHTISHCDCDTRFQQCLQNQHDSISDIVGVAFFNVL 240
Query: 241 EIPCFVLEEQEACVAWYWWGGCRMYGTVPLARLQPRTFYNASWSSRATSPTPSSRSPAPP 300
EIPCFVLEEQEACVAWYWWGGCRMYGTVPLARLQPRTFYNASWSSRATSPTPSSRSPAPP
Sbjct: 241 EIPCFVLEEQEACVAWYWWGGCRMYGTVPLARLQPRTFYNASWSSRATSPTPSSRSPAPP 300
Query: 301 KPRQKQHLRKGPPHQKGSKRPSKANTTALQDPMVSPRLDVAPTGLQGPQGGLKPQGARWV 360
KPRQKQHLRKGPPHQKGSKRPSKANTTALQDPMVSPRLDVAPTGLQGPQGGLKPQGARWV
Sbjct: 301 KPRQKQHLRKGPPHQKGSKRPSKANTTALQDPMVSPRLDVAPTGLQGPQGGLKPQGARWV 360
Query: 361 CRSFRRHLDQCEHQIGPREIEFQLLNSAQEPLFHCNCTRRLARFLRLHSPPEVTNMLWEL 420
CRSFRRHLDQCEHQIGPREIEFQLLNSAQEPLFHCNCTRRLARFLRLHSPPEVTNMLWEL
Sbjct: 361 CRSFRRHLDQCEHQIGPREIEFQLLNSAQEPLFHCNCTRRLARFLRLHSPPEVTNMLWEL 420
Query: 421 LGTTCFKLAPPLDCVEGKNCSRDPRAIRVSARHLRRLQQRRHQLQDKGTDERQPWPSEPL 480
LGTTCFKLAPPLDCVEGKNCSRDPRAIRVSARHLRRLQQRRHQLQDKGTDERQPWPSEPL
Sbjct: 421 LGTTCFKLAPPLDCVEGKNCSRDPRAIRVSARHLRRLQQRRHQLQDKGTDERQPWPSEPL 480
Query: 481 RGPMSFYNQCLQLTQAARRPDRQQKSWSQ 509
RGPMSFYNQCLQLTQAARRPDRQQKSWSQ
Sbjct: 481 RGPMSFYNQCLQLTQAARRPDRQQKSWSQ 509
>gi|22748973 protein interacting with cyclin A1 [Homo sapiens]
Length = 336
Score = 57.0 bits (136), Expect = 4e-08
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Query: 177 PDLCCREHDRCPQNIS-PLQYNYGIRNYRFHTISHCDCDTRFQQCLQNQHDSISDIVGVA 235
PD CC H +C +I P + + H+++HC+C++R + ++ S S G
Sbjct: 36 PDKCCWRHKQCTGHIIYPFASDCVRHSLHLHSVNHCNCNSRLKD--SSEDSSSSRGAGPT 93
Query: 236 FFNVLEIPCFVLEEQEACVAWYWWGGCRMYGTVPLARLQPRTFYNASWSSRATSPTPSSR 295
+V+E PCF L +E V + +G C+ Y V +A + ++
Sbjct: 94 CSHVIESPCFELTPEEEHVERFRYGWCKSYRPVSVAVIHHPLYHECGADDLNEEEEEEEE 153
Query: 296 SPAPPKPRQ 304
PP P Q
Sbjct: 154 ESKPPIPTQ 162
>gi|134254450 patched isoform S [Homo sapiens]
Length = 1296
Score = 38.5 bits (88), Expect = 0.015
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 285 SRATSPTPSSRSPAPPKPRQKQHLRKG--PPHQKGSKRPSKANTTALQDPMVSPRLDVAP 342
+ +T P SR P PRQ+ HL G PP ++G + L P PR D
Sbjct: 1114 AHSTVVHPESRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDPPREGLWPPPYRPRRDAFE 1173
Query: 343 TGLQGPQGGLKPQGARWVCRSFRRH 367
+G G ARW R R H
Sbjct: 1174 ISTEGHSG--PSNRARWGPRGARSH 1196
>gi|134254435 patched isoform S [Homo sapiens]
Length = 1296
Score = 38.5 bits (88), Expect = 0.015
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 285 SRATSPTPSSRSPAPPKPRQKQHLRKG--PPHQKGSKRPSKANTTALQDPMVSPRLDVAP 342
+ +T P SR P PRQ+ HL G PP ++G + L P PR D
Sbjct: 1114 AHSTVVHPESRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDPPREGLWPPPYRPRRDAFE 1173
Query: 343 TGLQGPQGGLKPQGARWVCRSFRRH 367
+G G ARW R R H
Sbjct: 1174 ISTEGHSG--PSNRARWGPRGARSH 1196
>gi|134254468 patched isoform S [Homo sapiens]
Length = 1296
Score = 38.5 bits (88), Expect = 0.015
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 285 SRATSPTPSSRSPAPPKPRQKQHLRKG--PPHQKGSKRPSKANTTALQDPMVSPRLDVAP 342
+ +T P SR P PRQ+ HL G PP ++G + L P PR D
Sbjct: 1114 AHSTVVHPESRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDPPREGLWPPPYRPRRDAFE 1173
Query: 343 TGLQGPQGGLKPQGARWVCRSFRRH 367
+G G ARW R R H
Sbjct: 1174 ISTEGHSG--PSNRARWGPRGARSH 1196
>gi|134254452 patched isoform S [Homo sapiens]
Length = 1296
Score = 38.5 bits (88), Expect = 0.015
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 285 SRATSPTPSSRSPAPPKPRQKQHLRKG--PPHQKGSKRPSKANTTALQDPMVSPRLDVAP 342
+ +T P SR P PRQ+ HL G PP ++G + L P PR D
Sbjct: 1114 AHSTVVHPESRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDPPREGLWPPPYRPRRDAFE 1173
Query: 343 TGLQGPQGGLKPQGARWVCRSFRRH 367
+G G ARW R R H
Sbjct: 1174 ISTEGHSG--PSNRARWGPRGARSH 1196
>gi|134254432 patched isoform L' [Homo sapiens]
Length = 1446
Score = 38.5 bits (88), Expect = 0.015
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 285 SRATSPTPSSRSPAPPKPRQKQHLRKG--PPHQKGSKRPSKANTTALQDPMVSPRLDVAP 342
+ +T P SR P PRQ+ HL G PP ++G + L P PR D
Sbjct: 1264 AHSTVVHPESRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDPPREGLWPPPYRPRRDAFE 1323
Query: 343 TGLQGPQGGLKPQGARWVCRSFRRH 367
+G G ARW R R H
Sbjct: 1324 ISTEGHSG--PSNRARWGPRGARSH 1346
>gi|134254466 patched isoform M [Homo sapiens]
Length = 1381
Score = 38.5 bits (88), Expect = 0.015
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 285 SRATSPTPSSRSPAPPKPRQKQHLRKG--PPHQKGSKRPSKANTTALQDPMVSPRLDVAP 342
+ +T P SR P PRQ+ HL G PP ++G + L P PR D
Sbjct: 1199 AHSTVVHPESRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDPPREGLWPPPYRPRRDAFE 1258
Query: 343 TGLQGPQGGLKPQGARWVCRSFRRH 367
+G G ARW R R H
Sbjct: 1259 ISTEGHSG--PSNRARWGPRGARSH 1281
>gi|134254446 patched isoform L [Homo sapiens]
Length = 1447
Score = 38.5 bits (88), Expect = 0.015
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 285 SRATSPTPSSRSPAPPKPRQKQHLRKG--PPHQKGSKRPSKANTTALQDPMVSPRLDVAP 342
+ +T P SR P PRQ+ HL G PP ++G + L P PR D
Sbjct: 1265 AHSTVVHPESRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDPPREGLWPPPYRPRRDAFE 1324
Query: 343 TGLQGPQGGLKPQGARWVCRSFRRH 367
+G G ARW R R H
Sbjct: 1325 ISTEGHSG--PSNRARWGPRGARSH 1347
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 37.0 bits (84), Expect = 0.043
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 292 PSSRSPAPPKPRQKQHLRKGPPHQKGSKRPSKANTTALQD-PMVSPRLDVAPTGLQGPQG 350
P S +PP PR K+ GPP G P+ A A +D P P D P G GP+G
Sbjct: 1215 PGSPGISPPGPRGKKG-PPGPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRG 1273
Query: 351 GLKPQG 356
P G
Sbjct: 1274 APGPPG 1279
>gi|239753698 PREDICTED: hypothetical protein [Homo sapiens]
Length = 416
Score = 34.7 bits (78), Expect = 0.21
Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 18/94 (19%)
Query: 281 ASWSSRATSPTPSSRSPAPPKPRQKQHL----------RKGPPHQKGSKR---PSKA--N 325
+SWS A PTP S + APP HL R+ P G +R P+ A
Sbjct: 84 SSWSRAA--PTPRSAAEAPPGSAIPAHLPRSVQRVLGARRTEPRSAGERRRALPAAAGRK 141
Query: 326 TTALQDPMVSPRLDVAP-TGLQGPQGGLKPQGAR 358
T Q SPR AP T GP G +P+G R
Sbjct: 142 TKTWQSQNQSPRSARAPHTAGAGPGPGPEPRGRR 175
>gi|239748278 PREDICTED: hypothetical protein [Homo sapiens]
Length = 416
Score = 34.7 bits (78), Expect = 0.21
Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 18/94 (19%)
Query: 281 ASWSSRATSPTPSSRSPAPPKPRQKQHL----------RKGPPHQKGSKR---PSKA--N 325
+SWS A PTP S + APP HL R+ P G +R P+ A
Sbjct: 84 SSWSRAA--PTPRSAAEAPPGSAIPAHLPRSVQRVLGARRTEPRSAGERRRALPAAAGRK 141
Query: 326 TTALQDPMVSPRLDVAP-TGLQGPQGGLKPQGAR 358
T Q SPR AP T GP G +P+G R
Sbjct: 142 TKTWQSQNQSPRSARAPHTAGAGPGPGPEPRGRR 175
>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
Length = 1352
Score = 34.7 bits (78), Expect = 0.21
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 279 YNASWSSRATSPTPSSRSPAPP-KPRQKQH--LRKGPPHQKGSKRPSKANTTALQDPMVS 335
Y AS +S + P++RSP PP K R H R+G GS R S +T+ P VS
Sbjct: 1123 YTASSTSAKKASGPATRSPFPPGKSRTSDHSLSREGSRQSLGSDRASATSTSKPNSPRVS 1182
>gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 389
Score = 34.3 bits (77), Expect = 0.28
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 296 SPAPPKPRQKQHLRKGPPHQKGSK--------RPSKANTTALQDPMVSPRLDVAPTGLQ- 346
SPAPP+P+ PP + + P +A A+ + +PR DVA GL+
Sbjct: 173 SPAPPRPQPPSRPAAQPPSRPAFRSPRPVRGPHPRRAVVVAVLFGVQAPRRDVAEGGLRR 232
Query: 347 -GPQGGLKPQGAR 358
G + GL PQ R
Sbjct: 233 DGRRPGLAPQRGR 245
>gi|108860690 chromosome 16 open reading frame 7 [Homo sapiens]
Length = 631
Score = 34.3 bits (77), Expect = 0.28
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 19/93 (20%)
Query: 269 PLARLQPR---TFYNASWS--SRATSPTPSSRSPAPP------KPRQKQHLRKGPPHQKG 317
P+A+L R + Y+A + SRA +P P P P +P Q H PP
Sbjct: 283 PIAQLLRRLQCSVYSALYPAVSRAAAPAPGCCPPTPNPGSRRLRPSQSLHCMLSPPEPSA 342
Query: 318 SKRPSKANTTALQDPMVSPRLDVAPTGLQGPQG 350
+ RP QD +P L P G P G
Sbjct: 343 APRP--------QDSPPTPPLQPGPVGSPSPLG 367
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 33.9 bits (76), Expect = 0.36
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 290 PTPSSRSPAPPKPRQKQHLRKGPPHQKGSKRPSKANTTALQDPMVSPRLDVAPTGLQGPQ 349
P R P P P Q GPP +GS P Q P P+ + P G GPQ
Sbjct: 674 PQGMQRHPGPHGPLGPQ----GPPGPQGSSGPQ--GHMGPQGPP-GPQGHIGPQGPPGPQ 726
Query: 350 GGLKPQG 356
G L PQG
Sbjct: 727 GHLGPQG 733
Score = 33.5 bits (75), Expect = 0.47
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 290 PTPSSRSPAPPKPRQKQHLRKGPPHQKGSKRPSKANTTALQDPMVS-PRLDVAPTGLQGP 348
P + PP PR Q GPPH G + + +Q P+ P + + P G+QGP
Sbjct: 734 PPGTQGMQGPPGPRGMQ----GPPHPHGIQ--GGPGSQGIQGPVSQGPLMGLNPRGMQGP 787
Query: 349 QGGLKPQG 356
G + QG
Sbjct: 788 PGPRENQG 795
>gi|239750954 PREDICTED: hypothetical protein XP_002347616 [Homo
sapiens]
Length = 194
Score = 33.1 bits (74), Expect = 0.61
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 260 GGCRMYGTVPLARLQPRTFYNASWSSRATSPTPSSRSPAPPKPRQKQHLRKGPPHQKGSK 319
GG ++ T P A L R A + P +PAPP PR + R G P G+
Sbjct: 112 GGHQLLQTWPEAPLCGRPGQGAWGAGPTREAPPPLETPAPPMPRPNEDPRYGGP-ALGAG 170
Query: 320 RPSKANTTA 328
RPS+++ A
Sbjct: 171 RPSQSSCQA 179
>gi|239745360 PREDICTED: hypothetical protein XP_002343446 [Homo
sapiens]
Length = 194
Score = 33.1 bits (74), Expect = 0.61
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 260 GGCRMYGTVPLARLQPRTFYNASWSSRATSPTPSSRSPAPPKPRQKQHLRKGPPHQKGSK 319
GG ++ T P A L R A + P +PAPP PR + R G P G+
Sbjct: 112 GGHQLLQTWPEAPLCGRPGQGAWGAGPTREAPPPLETPAPPMPRPNEDPRYGGP-ALGAG 170
Query: 320 RPSKANTTA 328
RPS+++ A
Sbjct: 171 RPSQSSCQA 179
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 33.1 bits (74), Expect = 0.61
Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 285 SRATSPTPSSRSPAPPKPRQKQHLRKGPPHQKGSKRPSKANTTALQDPMVSPRLDVAPTG 344
+R P P + PP K + PP + P N Q P P P
Sbjct: 127 NRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQP--QGPPPPPGKPQGPP- 183
Query: 345 LQGPQGGLKPQG 356
PQGG KPQG
Sbjct: 184 ---PQGGKKPQG 192
Score = 31.2 bits (69), Expect = 2.3
Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 290 PTPSSRSPAPPKPRQKQHLRKGPPHQKGSKRPSKANTTALQDPMVSPRLDVAPTGLQGPQ 349
P P + PP K + PP + P N Q P P P PQ
Sbjct: 193 PPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQP--QGPPPPPGKPQGPP----PQ 246
Query: 350 GGLKPQG 356
GG KPQG
Sbjct: 247 GGNKPQG 253
Score = 30.4 bits (67), Expect = 4.0
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 285 SRATSPTPSSRSPAPPKPRQKQHLRKGPPHQKGSKRPSKANTTALQDPMVSPRLDVAPTG 344
++ P P + PP K + PP + P N Q P P P
Sbjct: 66 NKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQP--QGPPPPPGKPQGPP- 122
Query: 345 LQGPQGGLKPQG 356
PQGG +PQG
Sbjct: 123 ---PQGGNRPQG 131
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 32.7 bits (73), Expect = 0.80
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 284 SSRATSPT-PSSRSPAPPKPRQKQH-LRKGPPHQKGSKRPSKANTTALQDPMVSP 336
S++ T PT P S+ P P KP +Q K PP Q GS +P + + P P
Sbjct: 460 SAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQP 514
Score = 32.0 bits (71), Expect = 1.4
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 274 QPRTFYNASWSSRATSPTPSSRSPAPPKPRQKQHLRKGPPHQKGSKRPSKANTTALQDPM 333
QP + S +T P P PA P P+Q K P Q GS +PS + +
Sbjct: 493 QPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGS-TKPPSQQPGSAKPSAQQPSPAKPSA 551
Query: 334 VSPRLDVAPTGLQGP 348
V+ TG P
Sbjct: 552 QQSTKPVSQTGSGKP 566
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 32.7 bits (73), Expect = 0.80
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 284 SSRATSPT-PSSRSPAPPKPRQKQH-LRKGPPHQKGSKRPSKANTTALQDPMVSP 336
S++ T PT P S+ P P KP +Q K PP Q GS +P + + P P
Sbjct: 460 SAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQP 514
Score = 32.0 bits (71), Expect = 1.4
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 274 QPRTFYNASWSSRATSPTPSSRSPAPPKPRQKQHLRKGPPHQKGSKRPSKANTTALQDPM 333
QP + S +T P P PA P P+Q K P Q GS +PS + +
Sbjct: 493 QPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGS-TKPPSQQPGSAKPSAQQPSPAKPSA 551
Query: 334 VSPRLDVAPTGLQGP 348
V+ TG P
Sbjct: 552 QQSTKPVSQTGSGKP 566
>gi|116063558 tet oncogene family member 2 isoform b [Homo sapiens]
Length = 1165
Score = 32.3 bits (72), Expect = 1.0
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 274 QPRTFYNASWSSRATSPTPSS--RSPAPPKPRQKQHLRKGPPHQKGS------KRPSKAN 325
Q F S+S+ T P PS SP PP P+ Q +G G P+++N
Sbjct: 383 QSSVFTKDSFSATTTPPPPSQLLLSPPPPLPQVPQLPSEGKSTLNGGVLEEHHHYPNQSN 442
Query: 326 TTALQDPMVSPRLDVAPTGLQGP 348
TT L++ + + + P+ P
Sbjct: 443 TTLLREVKIEGKPEAPPSQSPNP 465
>gi|187761317 tet oncogene family member 2 isoform a [Homo sapiens]
Length = 2002
Score = 32.3 bits (72), Expect = 1.0
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 274 QPRTFYNASWSSRATSPTPSS--RSPAPPKPRQKQHLRKGPPHQKGS------KRPSKAN 325
Q F S+S+ T P PS SP PP P+ Q +G G P+++N
Sbjct: 383 QSSVFTKDSFSATTTPPPPSQLLLSPPPPLPQVPQLPSEGKSTLNGGVLEEHHHYPNQSN 442
Query: 326 TTALQDPMVSPRLDVAPTGLQGP 348
TT L++ + + + P+ P
Sbjct: 443 TTLLREVKIEGKPEAPPSQSPNP 465
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 32.3 bits (72), Expect = 1.0
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 274 QPRTFYNASWSSRATSPTPSSRSPAPPKPRQKQHLRKG--PPHQKGSKRPSKANTTALQD 331
+P F S A PT +S +P P P + ++ P ++G+ P A ++ D
Sbjct: 2346 KPSPFQVPSEDCAANGPTETSPNPPGPAPAKAENEEAAACPAWERGAW-PEGAERSSRPD 2404
Query: 332 PMVSPRLDVAPTGLQG-------PQGGLKPQGARWVCRSFRRHL 368
++SP V P G G P+ PQG R R L
Sbjct: 2405 TLLSPEQPVCPAGGSGGPPSSASPEVEAGPQGCATEPRPHRGEL 2448
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 32.3 bits (72), Expect = 1.0
Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 275 PRTFYNASWSSRATSPTPSSRSPAPPKPRQKQHL----RKGPPHQKGSKRPSKANTTALQ 330
PR F R +P PS +PA P P + Q P + S S + +
Sbjct: 1534 PRAFTRERPQGRKEAPAPSKAAPAAPPPARTQPSLIADETPPCYSLSSSASSLSEPEPSE 1593
Query: 331 DPMVSPR-LDVAPTGLQGPQGG 351
P V PR + A T GP GG
Sbjct: 1594 PPAVHPRGREPAVTKDPGPGGG 1615
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 32.0 bits (71), Expect = 1.4
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 20/87 (22%)
Query: 126 AGARKKRAAGQS-GVPGGGHQREKRGWTMPGTLWCGVGDSAGNS-----------SELGV 173
AGA +R A Q+ G G R +RG MPG + GVG+ G S ++L V
Sbjct: 477 AGASGRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEGRGASEPEGEPEPRARADLEV 536
Query: 174 FQG--------PDLCCREHDRCPQNIS 192
Q P+L R RCP ++
Sbjct: 537 LQAGFERLQSLPELAERLGGRCPGQVA 563
>gi|33359694 ubiquitin-conjugating enzyme E2E 3 [Homo sapiens]
Length = 207
Score = 32.0 bits (71), Expect = 1.4
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 284 SSRATSPTPSSRSPAPPKPRQKQHLRKGPPHQK-----GSKRPSKANTTA--LQDPMVSP 336
S+ + S R PA P+P +++ + QK SK +K +T+A +Q +
Sbjct: 14 STSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEI 73
Query: 337 RLDVAPTGLQGPQG 350
LD P GP+G
Sbjct: 74 TLDPPPNCSAGPKG 87
>gi|5454146 ubiquitin-conjugating enzyme E2E 3 [Homo sapiens]
Length = 207
Score = 32.0 bits (71), Expect = 1.4
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 284 SSRATSPTPSSRSPAPPKPRQKQHLRKGPPHQK-----GSKRPSKANTTA--LQDPMVSP 336
S+ + S R PA P+P +++ + QK SK +K +T+A +Q +
Sbjct: 14 STSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEI 73
Query: 337 RLDVAPTGLQGPQG 350
LD P GP+G
Sbjct: 74 TLDPPPNCSAGPKG 87
>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
Length = 355
Score = 32.0 bits (71), Expect = 1.4
Identities = 31/113 (27%), Positives = 41/113 (36%), Gaps = 24/113 (21%)
Query: 267 TVPLARLQPRTFYNASWSSRATSP-------TP-----------SSRSPAPPKPRQKQHL 308
T P A+L PR SWS + + P TP R+P+P P+Q +
Sbjct: 244 TYPAAQLGPRGAAGYSWSPQRSMPPRPGYPGTPMGASGPGYPLRGGRAPSPGYPQQSPYP 303
Query: 309 RKG--PPHQKGSKRPSKANTTALQDPMVSPRLDVAPTGLQGPQGGLKPQGARW 359
G PP+ + PS P+ P P G P G P G W
Sbjct: 304 ATGGKPPYPIQPQLPSFPGQPQPSVPLQPP----YPPGPAPPYGFPPPPGPAW 352
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.0 bits (71), Expect = 1.4
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 275 PRTFYNASWSSRATSPTPS--SRSPAPPKPRQKQHLRKGPPHQKGSKRPS-KANTTALQD 331
PR + S +A S TP SRS + P P+QK H S P K+ T Q
Sbjct: 794 PRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQG 853
Query: 332 PMVSPR 337
+ SP+
Sbjct: 854 SITSPQ 859
Score = 29.3 bits (64), Expect = 8.9
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 280 NASWSSRATSPTPSSRSPAPPKP-----RQKQHLRKGPPHQKGSKRPSK 323
++S SS ++S + SS SP+P KP + +K PP ++ S+ P K
Sbjct: 2632 SSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRK 2680
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,870,508
Number of Sequences: 37866
Number of extensions: 1356138
Number of successful extensions: 6678
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 6425
Number of HSP's gapped (non-prelim): 372
length of query: 509
length of database: 18,247,518
effective HSP length: 107
effective length of query: 402
effective length of database: 14,195,856
effective search space: 5706734112
effective search space used: 5706734112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.