PTCH1 3342

Name: PTCH1	Sequence: fasta or formatted (1296aa)		NCBI GI: 134254435
Description: patched isoform S		Referenced in: Hedgehog and Related Pathways
Other entries for this name: alt prot [1446aa] patched isoform L' alt prot [1447aa] patched isoform L alt mRNA [1296aa] patched isoform S alt mRNA [1296aa] patched isoform S alt prot [1381aa] patched isoform M alt mRNA [1296aa] patched isoform S
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.4 96 3 C cysteine 1.8 23 2 D aspartate 4.6 59 2 E glutamate 5.3 69 2 F phenylalanine 4.5 58 2 G glycine 6.0 78 2 H histidine 3.2 41 2 I isoleucine 4.4 57 2 K lysine 3.2 41 2 L leucine 10.6 138 3 M methionine 2.3 30 2 N asparagine 3.4 44 2 P proline 7.4 96 4 Q glutamine 4.0 52 2 R arginine 4.9 63 2 S serine 7.7 100 3 T threonine 6.1 79 4 V valine 7.8 101 4 W tryptophan 1.5 19 1 Y tyrosine 4.0 52 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 patched isoform S PTCH1 1.000 patched isoform S PTCH1 1.000 patched isoform S PTCH1 1.000 patched isoform S PTCH1 1.000 patched isoform L' PTCH1 1.000 patched isoform M PTCH1 1.000 patched isoform L PTCH2 0.436 patched 2 NPC1 0.040 Niemann-Pick disease, type C1 precursor NPC1L1 0.039 Niemann-Pick C1-like protein 1 isoform 2 NPC1L1 0.032 Niemann-Pick C1-like protein 1 isoform 1 LOC100293249 0.026 PREDICTED: similar to hCG2040393 LOC100291245 0.026 PREDICTED: hypothetical protein XP_002347031 LOC100287846 0.026 PREDICTED: hypothetical protein XP_002342883 PTCHD3 0.023 patched domain containing 3 PTCHD1 0.022 patched domain containing 1 C6orf138 0.021 hypothetical protein LOC442213 SCAP 0.017 SREBF chaperone protein PTCHD2 0.011 patched domain containing 2 DISP1 0.010 dispatched A FLJ22184 0.009 PREDICTED: hypothetical protein FLJ22184 FLJ22184 0.009 PREDICTED: hypothetical protein LOC80164 CCNK 0.008 cyclin K isoform 1 PRB1 0.007 proline-rich protein BstNI subfamily 1 isoform 1 pre... KIAA1522 0.007 hypothetical protein LOC57648 PRB2 0.007 proline-rich protein BstNI subfamily 2 SFRS15 0.006 splicing factor, arginine/serine-rich 15 isoform 3 ... SFRS15 0.006 splicing factor, arginine/serine-rich 15 isoform 2 ... SFRS15 0.006 splicing factor, arginine/serine-rich 15 isoform 1 [... SFPQ 0.006 splicing factor proline/glutamine rich (polypyrimidin... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.