Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100290436 Sequence: fasta or formatted (194aa) NCBI GI: 239750954
Description:

PREDICTED: hypothetical protein XP_002347616

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         22           2
 C cysteine            2.1          4           1
 D aspartate           2.6          5           1
 E glutamate           5.2         10           2
 F phenylalanine       0.0          0           0
 G glycine            10.3         20           3
 H histidine           4.1          8           1
 I isoleucine          1.5          3           1
 K lysine              1.5          3           1
 L leucine             7.7         15           2
 M methionine          2.1          4           1
 N asparagine          1.5          3           1
 P proline            15.5         30           3
 Q glutamine           6.7         13           1
 R arginine            6.7         13           1
 S serine              8.8         17           3
 T threonine           6.7         13           1
 V valine              1.5          3           1
 W tryptophan          3.1          6           2
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347616 
LOC100287267          1.000   PREDICTED: hypothetical protein XP_002343446 
FLJ31945              0.043   PREDICTED: hypothetical protein 
FLJ31945              0.043   PREDICTED: hypothetical protein 
FLJ31945              0.043   PREDICTED: hypothetical protein 
LOC100130663          0.038   PREDICTED: hypothetical protein 
LOC100130663          0.038   PREDICTED: hypothetical protein 
LOC100130663          0.038   PREDICTED: hypothetical protein 
ARTN                  0.030   neurotrophic factor artemin isoform 2 
ARTN                  0.030   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.030   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.030   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.030   neurotrophic factor artemin isoform 3 precursor [Ho...
LOC100290372          0.030   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.030   PREDICTED: hypothetical protein XP_002342652 
MTSS1L                0.030   metastasis suppressor 1-like 
MEX3A                 0.030   MEX3A protein 
LOC100129129          0.028   PREDICTED: hypothetical protein 
ZNF469                0.028   zinc finger protein 469 
SLC38A10              0.028   solute carrier family 38, member 10 isoform a 
RIN2                  0.028   Ras and Rab interactor 2 
PRG4                  0.028   proteoglycan 4 isoform D 
PRG4                  0.028   proteoglycan 4 isoform C 
PRG4                  0.028   proteoglycan 4 isoform B 
PRG4                  0.028   proteoglycan 4 isoform A 
UNC13A                0.028   unc-13 homolog A 
CNOT3                 0.028   CCR4-NOT transcription complex, subunit 3 
LOC100292030          0.025   PREDICTED: hypothetical protein XP_002345578 
LOC100290572          0.025   PREDICTED: hypothetical protein XP_002348256 
LOC100289575          0.025   PREDICTED: hypothetical protein XP_002342245 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press