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Search of human proteins with 14192937
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14192937 sperm protein associated with the nucleus, X
chromosome, family member A1 [Homo sapiens]
(97 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14192937 sperm protein associated with the nucleus, X chromos... 197 1e-51
gi|22027489 sperm protein associated with the nucleus, X chromos... 197 1e-51
gi|13435137 sperm protein associated with the nucleus, X chromos... 189 4e-49
gi|14192939 SPANX family, member D [Homo sapiens] 185 6e-48
gi|22027496 SPANX family, member E [Homo sapiens] 184 1e-47
gi|190570192 SPANX family, member F1 [Homo sapiens] 158 1e-39
gi|14196344 SPANX family, member B1 [Homo sapiens] 157 2e-39
gi|22027492 sperm protein associated with the nucleus, X chromos... 157 2e-39
gi|57528144 SPANX family, member N5 [Homo sapiens] 64 3e-11
gi|57634514 SPANX-N2 protein [Homo sapiens] 63 6e-11
gi|57528121 SPANX-N1 protein [Homo sapiens] 63 6e-11
gi|58801563 SPANX-N3 protein [Homo sapiens] 61 2e-10
gi|229892308 shugoshin-like 2 isoform 2 [Homo sapiens] 31 0.24
gi|229892306 shugoshin-like 2 isoform 1 [Homo sapiens] 31 0.24
gi|229892197 shugoshin-like 2 isoform 3 [Homo sapiens] 31 0.24
gi|224586880 Ras protein-specific guanine nucleotide-releasing f... 31 0.24
gi|24797099 Ras protein-specific guanine nucleotide-releasing fa... 31 0.24
gi|24797101 Ras protein-specific guanine nucleotide-releasing fa... 31 0.24
gi|115430231 REC8 homolog [Homo sapiens] 31 0.24
gi|115430229 REC8 homolog [Homo sapiens] 31 0.24
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2... 29 0.71
gi|239735596 transmembrane protein 171 isoform 1 [Homo sapiens] 28 1.2
gi|239735594 transmembrane protein 171 isoform 2 [Homo sapiens] 28 1.2
gi|197313748 SET domain containing 2 [Homo sapiens] 28 1.2
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 28 2.1
gi|15149465 caldesmon 1 isoform 5 [Homo sapiens] 28 2.1
gi|15149463 caldesmon 1 isoform 4 [Homo sapiens] 28 2.1
gi|15149467 caldesmon 1 isoform 3 [Homo sapiens] 28 2.1
gi|4826657 caldesmon 1 isoform 2 [Homo sapiens] 28 2.1
gi|44680105 caldesmon 1 isoform 1 [Homo sapiens] 28 2.1
>gi|14192937 sperm protein associated with the nucleus, X
chromosome, family member A1 [Homo sapiens]
Length = 97
Score = 197 bits (501), Expect = 1e-51
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK 60
MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK
Sbjct: 1 MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK 60
Query: 61 RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK 97
RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK
Sbjct: 61 RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK 97
>gi|22027489 sperm protein associated with the nucleus, X
chromosome, family member A2 [Homo sapiens]
Length = 97
Score = 197 bits (501), Expect = 1e-51
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK 60
MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK
Sbjct: 1 MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK 60
Query: 61 RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK 97
RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK
Sbjct: 61 RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK 97
>gi|13435137 sperm protein associated with the nucleus, X
chromosome, family member C [Homo sapiens]
Length = 97
Score = 189 bits (480), Expect = 4e-49
Identities = 93/97 (95%), Positives = 94/97 (96%)
Query: 1 MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK 60
MDKQSSAGGVKRSVPC+SNE NE MPETPTGDSDPQPAPKKMKTSESSTILVVRYRRN K
Sbjct: 1 MDKQSSAGGVKRSVPCESNEVNETMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNVK 60
Query: 61 RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK 97
RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK
Sbjct: 61 RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK 97
>gi|14192939 SPANX family, member D [Homo sapiens]
Length = 97
Score = 185 bits (470), Expect = 6e-48
Identities = 91/97 (93%), Positives = 95/97 (97%)
Query: 1 MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK 60
MDKQSSAGGVKRSVPCDSNEANEMMPET +G SDPQPAPKK+KTSESSTILVVRYRRNFK
Sbjct: 1 MDKQSSAGGVKRSVPCDSNEANEMMPETSSGYSDPQPAPKKLKTSESSTILVVRYRRNFK 60
Query: 61 RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK 97
RTSPEEL+NDHAR+NRINPLQMEEEEFMEIMVEIPAK
Sbjct: 61 RTSPEELVNDHARKNRINPLQMEEEEFMEIMVEIPAK 97
>gi|22027496 SPANX family, member E [Homo sapiens]
Length = 97
Score = 184 bits (467), Expect = 1e-47
Identities = 91/97 (93%), Positives = 94/97 (96%)
Query: 1 MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK 60
MDKQSSAGGVKRSVPCDSNEANEMMPET +G SDPQPAPKK+KTSESSTILVVRYRRN K
Sbjct: 1 MDKQSSAGGVKRSVPCDSNEANEMMPETSSGYSDPQPAPKKLKTSESSTILVVRYRRNVK 60
Query: 61 RTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK 97
RTSPEEL+NDHARENRINPLQMEEEEFMEIMVEIPAK
Sbjct: 61 RTSPEELVNDHARENRINPLQMEEEEFMEIMVEIPAK 97
>gi|190570192 SPANX family, member F1 [Homo sapiens]
Length = 103
Score = 158 bits (399), Expect = 1e-39
Identities = 82/103 (79%), Positives = 86/103 (83%), Gaps = 6/103 (5%)
Query: 1 MDKQSSAGGVKRSVPCDSNEANEM------MPETPTGDSDPQPAPKKMKTSESSTILVVR 54
M +QSS +KRSVPC+SNEANE MPETPTGDSDPQPAPKKMKTSESSTILVVR
Sbjct: 1 MGQQSSVRRLKRSVPCESNEANEANEANKTMPETPTGDSDPQPAPKKMKTSESSTILVVR 60
Query: 55 YRRNFKRTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK 97
YRRN KRTSPEELLNDHARENRINP QMEEEEF+EI E P K
Sbjct: 61 YRRNVKRTSPEELLNDHARENRINPDQMEEEEFIEITTERPKK 103
>gi|14196344 SPANX family, member B1 [Homo sapiens]
Length = 103
Score = 157 bits (396), Expect = 2e-39
Identities = 81/103 (78%), Positives = 86/103 (83%), Gaps = 6/103 (5%)
Query: 1 MDKQSSAGGVKRSVPCDSNEANEM------MPETPTGDSDPQPAPKKMKTSESSTILVVR 54
M +QSS +KRSVPC+SNEANE MPETPTGDSDPQPAPKKMKTSESSTILVVR
Sbjct: 1 MGQQSSVRRLKRSVPCESNEANEANEANKTMPETPTGDSDPQPAPKKMKTSESSTILVVR 60
Query: 55 YRRNFKRTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK 97
YRRN KRTSPEEL+NDHARENRINP QMEEEEF+EI E P K
Sbjct: 61 YRRNVKRTSPEELVNDHARENRINPDQMEEEEFIEITTERPKK 103
>gi|22027492 sperm protein associated with the nucleus, X
chromosome, family member B2 [Homo sapiens]
Length = 103
Score = 157 bits (396), Expect = 2e-39
Identities = 81/103 (78%), Positives = 86/103 (83%), Gaps = 6/103 (5%)
Query: 1 MDKQSSAGGVKRSVPCDSNEANEM------MPETPTGDSDPQPAPKKMKTSESSTILVVR 54
M +QSS +KRSVPC+SNEANE MPETPTGDSDPQPAPKKMKTSESSTILVVR
Sbjct: 1 MGQQSSVRRLKRSVPCESNEANEANEANKTMPETPTGDSDPQPAPKKMKTSESSTILVVR 60
Query: 55 YRRNFKRTSPEELLNDHARENRINPLQMEEEEFMEIMVEIPAK 97
YRRN KRTSPEEL+NDHARENRINP QMEEEEF+EI E P K
Sbjct: 61 YRRNVKRTSPEELVNDHARENRINPDQMEEEEFIEITTERPKK 103
>gi|57528144 SPANX family, member N5 [Homo sapiens]
Length = 72
Score = 63.5 bits (153), Expect = 3e-11
Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 5 SSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFKRTSP 64
SS G KR PCDSN N+ M ETP D +P+ KKMKTSE ST+LV+ YR+ K+
Sbjct: 6 SSTNGEKRKSPCDSNSKNDEMQETPNRDLVLEPSLKKMKTSEYSTVLVLCYRKT-KKIHS 64
Query: 65 EELLNDHA 72
+L ND +
Sbjct: 65 NQLENDQS 72
>gi|57634514 SPANX-N2 protein [Homo sapiens]
Length = 180
Score = 62.8 bits (151), Expect = 6e-11
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 5 SSAGGVKRSVPCDSN-EANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFKRTS 63
SS G KR PC+SN + N+ M E P P+ + +K KT E TI+V YR++ K S
Sbjct: 6 SSTNGEKRKSPCESNNKKNDEMQEAPNRVLAPKQSLQKTKTIEYLTIIVYYYRKHTKINS 65
Query: 64 PEELLNDHARENRINPLQMEEEEFME 89
+L D +REN INP+Q EE+E ++
Sbjct: 66 -NQLEKDQSRENSINPVQEEEDEGLD 90
>gi|57528121 SPANX-N1 protein [Homo sapiens]
Length = 72
Score = 62.8 bits (151), Expect = 6e-11
Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 5 SSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFKRTSP 64
SS G KR PC+SN N+ M ETP D P+P+ KKMKTSE ST+L YR+ K+
Sbjct: 6 SSINGEKRKSPCESNNENDEMQETPNRDLAPEPSLKKMKTSEYSTVLAFCYRK-AKKIHS 64
Query: 65 EELLNDHA 72
+L ND +
Sbjct: 65 NQLENDQS 72
>gi|58801563 SPANX-N3 protein [Homo sapiens]
Length = 141
Score = 61.2 bits (147), Expect = 2e-10
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 5 SSAGGVKRSVPCDSN-EANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFKRTS 63
SS G K PC+SN + N+ M E P P+ + KK KTSE I+ V Y R K+ +
Sbjct: 6 SSTNGEKTKSPCESNNKKNDEMQEVPNRVLAPEQSLKKTKTSEYP-IIFVYYLRKGKKIN 64
Query: 64 PEELLNDHARENRINPLQMEEEEFMEI 90
+L N+ ++EN INP+Q EE+E +++
Sbjct: 65 SNQLENEQSQENSINPIQKEEDEGVDL 91
>gi|229892308 shugoshin-like 2 isoform 2 [Homo sapiens]
Length = 1260
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 23/87 (26%)
Query: 11 KRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFKRTSPEELLND 70
K + CD+N ++ +P+ P+ S QP + T ++S +L +
Sbjct: 171 KEKMQCDNNIKSKTLPDIPSSGSTTQP----LSTQDNSEVLFL----------------- 209
Query: 71 HARENRINPLQMEEEEFMEIMVEIPAK 97
+EN N +++ E + +V++P +
Sbjct: 210 --KENNQNVYGLDDSEHISSIVDVPPR 234
>gi|229892306 shugoshin-like 2 isoform 1 [Homo sapiens]
Length = 1265
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 23/87 (26%)
Query: 11 KRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFKRTSPEELLND 70
K + CD+N ++ +P+ P+ S QP + T ++S +L +
Sbjct: 171 KEKMQCDNNIKSKTLPDIPSSGSTTQP----LSTQDNSEVLFL----------------- 209
Query: 71 HARENRINPLQMEEEEFMEIMVEIPAK 97
+EN N +++ E + +V++P +
Sbjct: 210 --KENNQNVYGLDDSEHISSIVDVPPR 234
>gi|229892197 shugoshin-like 2 isoform 3 [Homo sapiens]
Length = 1261
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 23/87 (26%)
Query: 11 KRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFKRTSPEELLND 70
K + CD+N ++ +P+ P+ S QP + T ++S +L +
Sbjct: 171 KEKMQCDNNIKSKTLPDIPSSGSTTQP----LSTQDNSEVLFL----------------- 209
Query: 71 HARENRINPLQMEEEEFMEIMVEIPAK 97
+EN N +++ E + +V++P +
Sbjct: 210 --KENNQNVYGLDDSEHISSIVDVPPR 234
>gi|224586880 Ras protein-specific guanine nucleotide-releasing
factor 1 isoform 3 [Homo sapiens]
Length = 1257
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 1 MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK 60
+ KQSS ++ D N++++ +T T + PK +K SS + Y
Sbjct: 813 LSKQSSEVSMREESDIDQNQSDD--GDTETSPTKSPTTPKSVKNKNSSEFPLFSYNNGVV 870
Query: 61 RTSPEELLNDHA 72
TS EL N+ +
Sbjct: 871 MTSCRELDNNRS 882
>gi|24797099 Ras protein-specific guanine nucleotide-releasing
factor 1 isoform 1 [Homo sapiens]
Length = 1273
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 1 MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK 60
+ KQSS ++ D N++++ +T T + PK +K SS + Y
Sbjct: 829 LSKQSSEVSMREESDIDQNQSDD--GDTETSPTKSPTTPKSVKNKNSSEFPLFSYNNGVV 886
Query: 61 RTSPEELLNDHA 72
TS EL N+ +
Sbjct: 887 MTSCRELDNNRS 898
>gi|24797101 Ras protein-specific guanine nucleotide-releasing
factor 1 isoform 2 [Homo sapiens]
Length = 489
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 1 MDKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFK 60
+ KQSS ++ D N++++ +T T + PK +K SS + Y
Sbjct: 45 LSKQSSEVSMREESDIDQNQSDD--GDTETSPTKSPTTPKSVKNKNSSEFPLFSYNNGVV 102
Query: 61 RTSPEELLNDHA 72
TS EL N+ +
Sbjct: 103 MTSCRELDNNRS 114
>gi|115430231 REC8 homolog [Homo sapiens]
Length = 547
Score = 30.8 bits (68), Expect = 0.24
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 23 EMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFKRTSPEELLNDHARENRINPLQM 82
E+ PE PT +P+ P + E+ TIL R + EL RE ++ L
Sbjct: 169 EIPPEVPTEPREPERIPVTVLPPEAITILEAEPIRMLEIEGERELPEVSRRE--LDLLIA 226
Query: 83 EEEEFMEIMVEIP 95
EEEE I++EIP
Sbjct: 227 EEEE--AILLEIP 237
>gi|115430229 REC8 homolog [Homo sapiens]
Length = 547
Score = 30.8 bits (68), Expect = 0.24
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 23 EMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRRNFKRTSPEELLNDHARENRINPLQM 82
E+ PE PT +P+ P + E+ TIL R + EL RE ++ L
Sbjct: 169 EIPPEVPTEPREPERIPVTVLPPEAITILEAEPIRMLEIEGERELPEVSRRE--LDLLIA 226
Query: 83 EEEEFMEIMVEIP 95
EEEE I++EIP
Sbjct: 227 EEEE--AILLEIP 237
>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
[Homo sapiens]
Length = 1481
Score = 29.3 bits (64), Expect = 0.71
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 2 DKQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESS 48
DK S G +R+ EA E P P G P P P ++ SS
Sbjct: 1233 DKNSGPQGPRRTPTMPQEEAAEKRPPEPPGPPPPPPPPPLVEGDLSS 1279
>gi|239735596 transmembrane protein 171 isoform 1 [Homo sapiens]
Length = 324
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 16 CDSNEANEMMPETPTGDSDPQ 36
C SN A E + ET TGDS+P+
Sbjct: 136 CGSNWAQEPLNETDTGDSEPR 156
>gi|239735594 transmembrane protein 171 isoform 2 [Homo sapiens]
Length = 323
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 16 CDSNEANEMMPETPTGDSDPQ 36
C SN A E + ET TGDS+P+
Sbjct: 136 CGSNWAQEPLNETDTGDSEPR 156
>gi|197313748 SET domain containing 2 [Homo sapiens]
Length = 2564
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 23 EMMPETPTGDSDPQPAPKKMKTSESST 49
EM TPT D +P A KK KT+E+ T
Sbjct: 2436 EMDLGTPTYDENPMKASKKPKTAEADT 2462
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 19/94 (20%)
Query: 3 KQSSAGGVKRSVPCDSNEANEMMPETPTGDSDPQPAPKKMKTSESSTILVVRYRR---NF 59
++ S+G + +PC + +E +P+T +S + +ES+ + RYR+
Sbjct: 1304 RKDSSGSISEQLPCRDDGWSEQLPDTLVDES--------VSVTESTEKIKKRYRKRKNKL 1355
Query: 60 KRTSPEEL--------LNDHARENRINPLQMEEE 85
+ T P L L D +R+++I+ + E+
Sbjct: 1356 EETFPAYLQEAFFGKDLLDTSRQSKISLDNLSED 1389
>gi|15149465 caldesmon 1 isoform 5 [Homo sapiens]
Length = 532
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 18 SNEANEMMPETPTGDSDPQPAPKKMKTSESST 49
S+ NE + +TP G+ P P P ++ + S+
Sbjct: 482 SSRINEWLTKTPDGNKSPAPKPSDLRPGDVSS 513
>gi|15149463 caldesmon 1 isoform 4 [Homo sapiens]
Length = 558
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 18 SNEANEMMPETPTGDSDPQPAPKKMKTSESST 49
S+ NE + +TP G+ P P P ++ + S+
Sbjct: 508 SSRINEWLTKTPDGNKSPAPKPSDLRPGDVSS 539
>gi|15149467 caldesmon 1 isoform 3 [Homo sapiens]
Length = 564
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 18 SNEANEMMPETPTGDSDPQPAPKKMKTSESST 49
S+ NE + +TP G+ P P P ++ + S+
Sbjct: 514 SSRINEWLTKTPDGNKSPAPKPSDLRPGDVSS 545
>gi|4826657 caldesmon 1 isoform 2 [Homo sapiens]
Length = 538
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 18 SNEANEMMPETPTGDSDPQPAPKKMKTSESST 49
S+ NE + +TP G+ P P P ++ + S+
Sbjct: 488 SSRINEWLTKTPDGNKSPAPKPSDLRPGDVSS 519
>gi|44680105 caldesmon 1 isoform 1 [Homo sapiens]
Length = 793
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 18 SNEANEMMPETPTGDSDPQPAPKKMKTSESST 49
S+ NE + +TP G+ P P P ++ + S+
Sbjct: 743 SSRINEWLTKTPDGNKSPAPKPSDLRPGDVSS 774
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.124 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,071,249
Number of Sequences: 37866
Number of extensions: 172302
Number of successful extensions: 710
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 79
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.