Guide to the Human Genome
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Name: SPANXD Sequence: fasta or formatted (97aa) NCBI GI: 14192939
Description:

SPANX family, member D

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2          5           1
 C cysteine            1.0          1           1
 D aspartate           4.1          4           1
 E glutamate          12.4         12           4
 F phenylalanine       2.1          2           1
 G glycine             3.1          3           2
 H histidine           1.0          1           1
 I isoleucine          4.1          4           1
 K lysine              8.2          8           2
 L leucine             4.1          4           1
 M methionine          6.2          6           2
 N asparagine          6.2          6           1
 P proline             8.2          8           1
 Q glutamine           3.1          3           1
 R arginine            7.2          7           2
 S serine             11.3         11           2
 T threonine           4.1          4           1
 V valine              6.2          6           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SPANX family, member D 
SPANXE                0.971   SPANX family, member E 
SPANXA1               0.936   sperm protein associated with the nucleus, X chromos...
SPANXA2               0.936   sperm protein associated with the nucleus, X chromos...
SPANXC                0.889   sperm protein associated with the nucleus, X chromos...
SPANXB1               0.713   SPANX family, member B1 
SPANXB2               0.713   sperm protein associated with the nucleus, X chromos...
SPANXF1               0.708   SPANX family, member F1 
SPANXN2               0.205   SPANX-N2 protein 
SPANXN3               0.193   SPANX-N3 protein 
SPANXN5               0.187   SPANX family, member N5 
SPANXN1               0.181   SPANX-N1 protein 
RASGRF1               0.035   Ras protein-specific guanine nucleotide-releasing f...
RASGRF1               0.035   Ras protein-specific guanine nucleotide-releasing fa...
RASGRF1               0.035   Ras protein-specific guanine nucleotide-releasing fa...
MAP3K1                0.018   mitogen-activated protein kinase kinase kinase 1 [H...
SGOL2                 0.012   shugoshin-like 2 isoform 2 
SGOL2                 0.012   shugoshin-like 2 isoform 1 
SGOL2                 0.012   shugoshin-like 2 isoform 3 
HRASLS5               0.012   HRAS-like suppressor family, member 5 isoform 3 [Ho...
HRASLS5               0.012   HRAS-like suppressor family, member 5 isoform 1 [Hom...
C2orf55               0.012   hypothetical protein LOC343990 
UBAP2L                0.012   ubiquitin associated protein 2-like isoform a [Homo...
UBAP2L                0.012   ubiquitin associated protein 2-like isoform b [Homo...
HDGF2                 0.012   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.012   hepatoma-derived growth factor-related protein 2 iso...
MUC20                 0.012   mucin 20 isoform S 
MUC20                 0.012   mucin 20 isoform L 
TMPO                  0.012   thymopoietin isoform beta 
SNAP91                0.006   synaptosomal-associated protein, 91kDa homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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