Guide to the Human Genome
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Name: SPANXN3 Sequence: fasta or formatted (141aa) NCBI GI: 58801563
Description:

SPANX-N3 protein

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.7          1           1
 C cysteine            1.4          2           1
 D aspartate           8.5         12           1
 E glutamate          16.3         23           2
 F phenylalanine       0.7          1           1
 G glycine             7.1         10           1
 H histidine           0.0          0           0
 I isoleucine          3.5          5           2
 K lysine              9.2         13           2
 L leucine             6.4          9           1
 M methionine          1.4          2           1
 N asparagine          7.8         11           2
 P proline             5.7          8           1
 Q glutamine           6.4          9           1
 R arginine            1.4          2           1
 S serine             14.9         21           2
 T threonine           3.5          5           1
 V valine              2.8          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.1          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SPANX-N3 protein 
SPANXN2               0.735   SPANX-N2 protein 
SPANXN1               0.315   SPANX-N1 protein 
SPANXN5               0.288   SPANX family, member N5 
SPANXN4               0.288   SPANX family, member N4 
SPANXC                0.142   sperm protein associated with the nucleus, X chromos...
SPANXA1               0.138   sperm protein associated with the nucleus, X chromos...
SPANXA2               0.138   sperm protein associated with the nucleus, X chromos...
SPANXE                0.135   SPANX family, member E 
SPANXB1               0.131   SPANX family, member B1 
SPANXB2               0.131   sperm protein associated with the nucleus, X chromos...
SPANXD                0.127   SPANX family, member D 
SPANXF1               0.127   SPANX family, member F1 
TGOLN2                0.081   trans-golgi network protein 2 
SETD1B                0.062   SET domain containing 1B 
LOC646817             0.058   PREDICTED: similar to SET translocation 
LOC646817             0.058   PREDICTED: similar to SET translocation 
LOC646817             0.058   PREDICTED: similar to SET translocation 
UPF2                  0.054   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.054   UPF2 regulator of nonsense transcripts homolog [Homo...
BDP1                  0.054   transcription factor-like nuclear regulator 
ATAD2                 0.050   ATPase family, AAA domain containing 2 
SET                   0.050   SET translocation (myeloid leukemia-associated) iso...
SET                   0.050   SET translocation (myeloid leukemia-associated) iso...
KIF21B                0.050   kinesin family member 21B 
SUPT16H               0.046   chromatin-specific transcription elongation factor la...
DDX27                 0.046   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
CHD3                  0.046   chromodomain helicase DNA binding protein 3 isoform...
MYST4                 0.046   MYST histone acetyltransferase (monocytic leukemia)...
ANP32E                0.046   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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