Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 14165276
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14165276 esophageal cancer related gene 4 protein [Homo
sapiens]
(148 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14165276 esophageal cancer related gene 4 protein [Homo sapiens] 314 2e-86
gi|4502713 CDC45-like [Homo sapiens] 32 0.25
gi|21361837 chromosome 1 open reading frame 128 [Homo sapiens] 32 0.25
gi|20143946 potassium channel, subfamily K, member 10 isoform 3 ... 31 0.43
gi|20143944 potassium channel, subfamily K, member 10 isoform 2 ... 31 0.43
gi|10863961 potassium channel, subfamily K, member 10 isoform 1 ... 31 0.43
gi|28875786 FCH and double SH3 domains 1 [Homo sapiens] 30 0.96
gi|46488923 astrotactin isoform 1 [Homo sapiens] 28 2.8
gi|46488921 astrotactin isoform 2 [Homo sapiens] 28 2.8
gi|239754588 PREDICTED: similar to SLC29A4 protein [Homo sapiens] 28 2.8
gi|239743194 PREDICTED: similar to SLC29A4 protein [Homo sapiens] 28 3.7
gi|239743171 PREDICTED: hypothetical protein XP_002342767 [Homo ... 28 3.7
gi|239508863 PREDICTED: similar to SLC29A4 protein [Homo sapiens] 28 3.7
gi|239508835 PREDICTED: similar to SLC29A4 protein [Homo sapiens] 28 3.7
gi|133893286 acidic chitinase isoform c [Homo sapiens] 27 4.8
gi|42542398 acidic chitinase isoform a [Homo sapiens] 27 4.8
gi|4826708 ephrin A3 [Homo sapiens] 27 6.2
gi|4506967 v-ski sarcoma viral oncogene homolog [Homo sapiens] 27 6.2
gi|27477109 itchy homolog E3 ubiquitin protein ligase [Homo sapi... 27 6.2
gi|71040111 fibromodulin precursor [Homo sapiens] 27 6.2
gi|118197272 ATG2 autophagy related 2 homolog B [Homo sapiens] 27 6.2
gi|41054804 hypothetical protein LOC84970 isoform b [Homo sapiens] 27 6.2
gi|197927133 hypothetical protein LOC84970 isoform a [Homo sapiens] 27 6.2
gi|19923599 calmin [Homo sapiens] 27 6.2
gi|31581524 cordon-bleu homolog [Homo sapiens] 27 8.2
>gi|14165276 esophageal cancer related gene 4 protein [Homo sapiens]
Length = 148
Score = 314 bits (805), Expect = 2e-86
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MAASPARPAVLALTGLALLLLLCWGPGGISGNKLKLMLQKREAPVPTKTKVAVDENKAKE 60
MAASPARPAVLALTGLALLLLLCWGPGGISGNKLKLMLQKREAPVPTKTKVAVDENKAKE
Sbjct: 1 MAASPARPAVLALTGLALLLLLCWGPGGISGNKLKLMLQKREAPVPTKTKVAVDENKAKE 60
Query: 61 FLGSLKRQKRQLWDRTRPEVQQWYQQFLYMGFDEAKFEDDITYWLNRDRNGHEYYGDYYQ 120
FLGSLKRQKRQLWDRTRPEVQQWYQQFLYMGFDEAKFEDDITYWLNRDRNGHEYYGDYYQ
Sbjct: 61 FLGSLKRQKRQLWDRTRPEVQQWYQQFLYMGFDEAKFEDDITYWLNRDRNGHEYYGDYYQ 120
Query: 121 RHYDEDSAIGPRSPYGFRHGASVNYDDY 148
RHYDEDSAIGPRSPYGFRHGASVNYDDY
Sbjct: 121 RHYDEDSAIGPRSPYGFRHGASVNYDDY 148
>gi|4502713 CDC45-like [Homo sapiens]
Length = 566
Score = 31.6 bits (70), Expect = 0.25
Identities = 14/65 (21%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 46 PTKTKVAVDENKAKEFLGSLKRQKRQLWDRTRPEVQQWYQQFLYMGFDEAKFEDDITYWL 105
P++ + ++E ++ +++R++R+ W+ R ++ Y+Q+ Y G A ++ + L
Sbjct: 153 PSEKRTRLEEEIVEQ---TMRRRQRREWEARRRDILFDYEQYEYHGTSSAMVMFELAWML 209
Query: 106 NRDRN 110
++D N
Sbjct: 210 SKDLN 214
>gi|21361837 chromosome 1 open reading frame 128 [Homo sapiens]
Length = 211
Score = 31.6 bits (70), Expect = 0.25
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 74 DRTRPEVQQWYQQFLYMGFDEAKFEDDITYWLNRDRNGHEYYGDYYQR 121
D + P + Y+ M FD+ + E D T+ LNRD G Y R
Sbjct: 98 DDSHPSEMRLYKNIPQMSFDDTEREPDQTFSLNRDLTGELEYATKISR 145
>gi|20143946 potassium channel, subfamily K, member 10 isoform 3
[Homo sapiens]
Length = 543
Score = 30.8 bits (68), Expect = 0.43
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 52 AVDENKAKEFLGSLKRQKRQLWD--RTRPE-VQQWYQQFLYMGFDEAKFEDDITYWLNRD 108
A ++N +F + + KR+ D +T PE VQ+ Y+ F DE K E++ N D
Sbjct: 443 ASEDNIINKFGSTSRLTKRKNKDLKKTLPEDVQKIYKTFRNYSLDEEKKEEETEKMCNSD 502
Query: 109 RNGHEYYGDYYQRHYDEDSAIGP 131
+ D Q+H + ++ + P
Sbjct: 503 NSSTAMLTDCIQQHAELENGMIP 525
>gi|20143944 potassium channel, subfamily K, member 10 isoform 2
[Homo sapiens]
Length = 543
Score = 30.8 bits (68), Expect = 0.43
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 52 AVDENKAKEFLGSLKRQKRQLWD--RTRPE-VQQWYQQFLYMGFDEAKFEDDITYWLNRD 108
A ++N +F + + KR+ D +T PE VQ+ Y+ F DE K E++ N D
Sbjct: 443 ASEDNIINKFGSTSRLTKRKNKDLKKTLPEDVQKIYKTFRNYSLDEEKKEEETEKMCNSD 502
Query: 109 RNGHEYYGDYYQRHYDEDSAIGP 131
+ D Q+H + ++ + P
Sbjct: 503 NSSTAMLTDCIQQHAELENGMIP 525
>gi|10863961 potassium channel, subfamily K, member 10 isoform 1
[Homo sapiens]
Length = 538
Score = 30.8 bits (68), Expect = 0.43
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 52 AVDENKAKEFLGSLKRQKRQLWD--RTRPE-VQQWYQQFLYMGFDEAKFEDDITYWLNRD 108
A ++N +F + + KR+ D +T PE VQ+ Y+ F DE K E++ N D
Sbjct: 438 ASEDNIINKFGSTSRLTKRKNKDLKKTLPEDVQKIYKTFRNYSLDEEKKEEETEKMCNSD 497
Query: 109 RNGHEYYGDYYQRHYDEDSAIGP 131
+ D Q+H + ++ + P
Sbjct: 498 NSSTAMLTDCIQQHAELENGMIP 520
>gi|28875786 FCH and double SH3 domains 1 [Homo sapiens]
Length = 690
Score = 29.6 bits (65), Expect = 0.96
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 4 SPARPAVLALTGLALLLLLCWGPGGISGNK-LKLMLQKREAPVPTKTKVAVDENKAKEFL 62
SP P G + +L WG G++G L+ +Q+ + K+ +N L
Sbjct: 294 SPTPPQQFQPAGTDQVCVLEWGAEGVAGKSGLEKEVQRLTSRAARDYKI---QNHGHRVL 350
Query: 63 GSLKRQKRQLWDRTRPEVQQWYQQ 86
L+++++Q +R P ++Q Q+
Sbjct: 351 QRLEQRRQQASEREAPSIEQRLQE 374
>gi|46488923 astrotactin isoform 1 [Homo sapiens]
Length = 1294
Score = 28.1 bits (61), Expect = 2.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 11 LALTGLALLLLLCWGPGGI 29
+AL GL LL CWGP +
Sbjct: 1 MALAGLCALLACCWGPAAV 19
>gi|46488921 astrotactin isoform 2 [Homo sapiens]
Length = 1216
Score = 28.1 bits (61), Expect = 2.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 11 LALTGLALLLLLCWGPGGI 29
+AL GL LL CWGP +
Sbjct: 1 MALAGLCALLACCWGPAAV 19
>gi|239754588 PREDICTED: similar to SLC29A4 protein [Homo sapiens]
Length = 193
Score = 28.1 bits (61), Expect = 2.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 21 LLCWGPGGISGNKLKLMLQKREAPVPTKTK 50
+L GPG +G+K K Q RE P+P+ ++
Sbjct: 160 VLVGGPGKEAGDKAKEQQQSRERPIPSPSE 189
>gi|239743194 PREDICTED: similar to SLC29A4 protein [Homo sapiens]
Length = 307
Score = 27.7 bits (60), Expect = 3.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 21 LLCWGPGGISGNKLKLMLQKREAPVPT 47
+L GPG +G+K K Q RE P+P+
Sbjct: 211 VLVGGPGKEAGDKAKEQQQSRERPIPS 237
>gi|239743171 PREDICTED: hypothetical protein XP_002342767 [Homo
sapiens]
Length = 307
Score = 27.7 bits (60), Expect = 3.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 21 LLCWGPGGISGNKLKLMLQKREAPVPT 47
+L GPG +G+K K Q RE P+P+
Sbjct: 211 VLVGGPGKEAGDKAKEQQQSRERPIPS 237
>gi|239508863 PREDICTED: similar to SLC29A4 protein [Homo sapiens]
Length = 307
Score = 27.7 bits (60), Expect = 3.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 21 LLCWGPGGISGNKLKLMLQKREAPVPT 47
+L GPG +G+K K Q RE P+P+
Sbjct: 211 VLVGGPGKEAGDKAKEQQQSRERPIPS 237
>gi|239508835 PREDICTED: similar to SLC29A4 protein [Homo sapiens]
Length = 307
Score = 27.7 bits (60), Expect = 3.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 21 LLCWGPGGISGNKLKLMLQKREAPVPT 47
+L GPG +G+K K Q RE P+P+
Sbjct: 211 VLVGGPGKEAGDKAKEQQQSRERPIPS 237
>gi|133893286 acidic chitinase isoform c [Homo sapiens]
Length = 476
Score = 27.3 bits (59), Expect = 4.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 65 LKRQKRQLWDRTRPEVQQWYQQFLYMGFDEAKFEDDITYWLNRDRNG 111
LK Q WD + EV YQ +++G+D K D WL ++ G
Sbjct: 310 LKNGATQGWDAPQ-EVPYAYQGNVWVGYDNIKSFDIKAQWLKHNKFG 355
>gi|42542398 acidic chitinase isoform a [Homo sapiens]
Length = 368
Score = 27.3 bits (59), Expect = 4.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 65 LKRQKRQLWDRTRPEVQQWYQQFLYMGFDEAKFEDDITYWLNRDRNG 111
LK Q WD + EV YQ +++G+D K D WL ++ G
Sbjct: 202 LKNGATQGWDAPQ-EVPYAYQGNVWVGYDNIKSFDIKAQWLKHNKFG 247
>gi|4826708 ephrin A3 [Homo sapiens]
Length = 238
Score = 26.9 bits (58), Expect = 6.2
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 1 MAASPARPAVLALTGLALLLLLCWGPGGISGNK 33
MAA+P +L L + LL LL GPGG GN+
Sbjct: 1 MAAAPLL-LLLLLVPVPLLPLLAQGPGGALGNR 32
>gi|4506967 v-ski sarcoma viral oncogene homolog [Homo sapiens]
Length = 728
Score = 26.9 bits (58), Expect = 6.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 34 LKLMLQKREAPVPTKTKVAVDENKAKEFLGSL-KRQKRQLWDRTRPE 79
L++ LQ EA + E +A+E L + K + QLW R RPE
Sbjct: 670 LQVKLQHAEADREQLRADLLREREAREHLEKVVKELQEQLWPRARPE 716
>gi|27477109 itchy homolog E3 ubiquitin protein ligase [Homo
sapiens]
Length = 862
Score = 26.9 bits (58), Expect = 6.2
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 12 ALTGLALLLLLCWGPGGISGNKLKLMLQKREAPVPTKTKVAVDENKAKEFLGSLKRQKRQ 71
A +GL + L + G G N + +AP+P + VD++ ++ + +KR
Sbjct: 260 ATSGLIIPLTISGGSGPRPLNPVT------QAPLPPGWEQRVDQHGRVYYVDHV--EKRT 311
Query: 72 LWDRTRPEVQQWYQQFLYMG 91
WDR P W ++ MG
Sbjct: 312 TWDRPEPLPPGWERRVDNMG 331
>gi|71040111 fibromodulin precursor [Homo sapiens]
Length = 376
Score = 26.9 bits (58), Expect = 6.2
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 82 QWYQQFLYMGF---DEAKFEDDITYWLNRDRNGHEYYGDYYQRHYDEDSAIGPRSPYGFR 138
QW L G +A++EDD +W + R+ Y D Y + E PYG
Sbjct: 2 QWTSLLLLAGLFSLSQAQYEDDPHWWFHYLRSQQSTYYDPYDPYPYETY---EPYPYGVD 58
Query: 139 HGASVNY 145
G + Y
Sbjct: 59 EGPAYTY 65
>gi|118197272 ATG2 autophagy related 2 homolog B [Homo sapiens]
Length = 2078
Score = 26.9 bits (58), Expect = 6.2
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 28 GISGNKLKLMLQKREAPVPTKTKVAVDENKAKEFLGSLKRQKRQLWDRTRPEVQQWYQQF 87
G+ G+ L ++ V K E+ KEFL ++ + L R P W++Q
Sbjct: 1162 GVGGDSLNML------SVAVKILSDKSESNTKEFLIAVGLKGATLQHRMLPSGLSWHEQI 1215
Query: 88 LY 89
LY
Sbjct: 1216 LY 1217
>gi|41054804 hypothetical protein LOC84970 isoform b [Homo sapiens]
Length = 408
Score = 26.9 bits (58), Expect = 6.2
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 46 PTKTKVAVDENKAKEFLGSLKRQKRQLWDRTRPEVQQWYQQFLYMGFDEAKFEDDITYWL 105
P K ++N EFLG+ K Q R + EV E KF +T
Sbjct: 193 PKKPTCPAEKNLLYEFLGATKNPSGQPRLRNKVEVDG----------PELKFNAPVTV-- 240
Query: 106 NRDRNGHEYYGDYYQRHY 123
D+N +Y G+ + H+
Sbjct: 241 -ADKNNPKYTGNVFTPHF 257
>gi|197927133 hypothetical protein LOC84970 isoform a [Homo sapiens]
Length = 598
Score = 26.9 bits (58), Expect = 6.2
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 46 PTKTKVAVDENKAKEFLGSLKRQKRQLWDRTRPEVQQWYQQFLYMGFDEAKFEDDITYWL 105
P K ++N EFLG+ K Q R + EV E KF +T
Sbjct: 383 PKKPTCPAEKNLLYEFLGATKNPSGQPRLRNKVEVDG----------PELKFNAPVTV-- 430
Query: 106 NRDRNGHEYYGDYYQRHY 123
D+N +Y G+ + H+
Sbjct: 431 -ADKNNPKYTGNVFTPHF 447
>gi|19923599 calmin [Homo sapiens]
Length = 1002
Score = 26.9 bits (58), Expect = 6.2
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 39 QKREAPVPTKTKVAVDENKAKEFLGSLKRQKRQLWDRTRPEVQQWYQQFLYMGFDEAK-- 96
Q +E+P ++EN KE + S K++KR+ D + F+ G ++
Sbjct: 837 QSQESPNLENIANPLEENVTKESISSKKKEKRKHVDHVESSL------FVAPGSVQSSDD 890
Query: 97 FEDDITYWLNRDRNGHEYYGDYYQRHYDEDSAIGPRSPYGFRHGASVN 144
E+D + + R H Y +RH S S R+ A ++
Sbjct: 891 LEEDSSDYSIPSRTSHSDSSIYLRRHTHRSSESDHFSYVQLRNAADLD 938
>gi|31581524 cordon-bleu homolog [Homo sapiens]
Length = 1261
Score = 26.6 bits (57), Expect = 8.2
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 27 GGISGNKLKLMLQKREAPVPTKTKVAV-DENKAKEFLGS---LKRQKRQ 71
G ISG +K ++KR AP P + V D+ K LGS L+++KR+
Sbjct: 286 GSISGVSVKSEMKKRRAPPPPGSGPPVQDKASEKVSLGSQIDLQKKKRR 334
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,369,715
Number of Sequences: 37866
Number of extensions: 285367
Number of successful extensions: 813
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 25
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.