Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 9624988
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9624988 hypothetical protein LOC56260 [Homo sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9624988 hypothetical protein LOC56260 [Homo sapiens] 337 2e-93
gi|239754959 PREDICTED: similar to Protein MOST-1 [Homo sapiens] 61 5e-10
gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Hom... 45 2e-05
gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Hom... 45 3e-05
gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens] 44 8e-05
gi|224451053 homeobox C14 [Homo sapiens] 42 2e-04
gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens] 41 4e-04
gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Hom... 41 5e-04
gi|18543327 tectonic family member 1 isoform 3 [Homo sapiens] 39 0.001
gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo ... 33 0.13
gi|239751084 PREDICTED: hypothetical protein XP_002347710 [Homo ... 33 0.13
gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo ... 33 0.13
gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens] 31 0.51
gi|114155127 regulator of G-protein signalling 3 isoform 6 [Homo... 30 0.87
gi|116089282 APG9 autophagy 9-like 1 [Homo sapiens] 29 1.5
gi|116089287 APG9 autophagy 9-like 1 [Homo sapiens] 29 1.5
gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo ... 28 3.3
gi|117306169 prolylcarboxypeptidase isoform 2 preproprotein [Hom... 28 3.3
gi|4826940 prolylcarboxypeptidase isoform 1 preproprotein [Homo ... 28 3.3
gi|22027482 neuronal PAS domain protein 1 [Homo sapiens] 28 3.3
gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens] 28 4.3
gi|110611239 alpha-L-iduronidase precursor [Homo sapiens] 27 5.6
gi|118600985 zinc finger protein 91 [Homo sapiens] 27 5.6
gi|31543559 radial spoke 3 homolog [Homo sapiens] 27 7.4
gi|38788260 bromodomain PHD finger transcription factor isoform ... 27 7.4
gi|38788274 bromodomain PHD finger transcription factor isoform ... 27 7.4
gi|94680976 coiled-coil domain containing 112 isoform 1 [Homo sa... 27 7.4
gi|145580595 coiled-coil domain containing 112 isoform 2 [Homo s... 27 7.4
gi|16975496 cortactin binding protein 2 [Homo sapiens] 27 7.4
>gi|9624988 hypothetical protein LOC56260 [Homo sapiens]
Length = 159
Score = 337 bits (865), Expect = 2e-93
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MRKNESYLNQPAPPIPIPTLSLMGGCREHFENHWKGRARWLMPVIPALWEAKAGRSPEVR 60
MRKNESYLNQPAPPIPIPTLSLMGGCREHFENHWKGRARWLMPVIPALWEAKAGRSPEVR
Sbjct: 1 MRKNESYLNQPAPPIPIPTLSLMGGCREHFENHWKGRARWLMPVIPALWEAKAGRSPEVR 60
Query: 61 SSKPAWPTWRNPIFTKNTKISQVLELFLNYQSLICALEKQKRQKGSLAIFCWSFQGGCVS 120
SSKPAWPTWRNPIFTKNTKISQVLELFLNYQSLICALEKQKRQKGSLAIFCWSFQGGCVS
Sbjct: 61 SSKPAWPTWRNPIFTKNTKISQVLELFLNYQSLICALEKQKRQKGSLAIFCWSFQGGCVS 120
Query: 121 KRPDVPSLKSQKPKRKRITGRKRLSKGFWSLLFSNLGRF 159
KRPDVPSLKSQKPKRKRITGRKRLSKGFWSLLFSNLGRF
Sbjct: 121 KRPDVPSLKSQKPKRKRITGRKRLSKGFWSLLFSNLGRF 159
>gi|239754959 PREDICTED: similar to Protein MOST-1 [Homo sapiens]
Length = 99
Score = 60.8 bits (146), Expect = 5e-10
Identities = 26/37 (70%), Positives = 30/37 (81%), Gaps = 3/37 (8%)
Query: 33 HWKGRARWLMPVIPALWEAKAGRSPEVRSSKPAWPTW 69
HW ARWL PVIPALW+A+AG PE+RSS+PAW TW
Sbjct: 66 HW---ARWLTPVIPALWKAEAGGLPELRSSRPAWTTW 99
>gi|197304731 cytochrome b-561 domain containing 1 isoform 4 [Homo
sapiens]
Length = 133
Score = 45.4 bits (106), Expect = 2e-05
Identities = 24/38 (63%), Positives = 28/38 (73%), Gaps = 3/38 (7%)
Query: 36 GRARWLMPVIPALWEAKAGRSPEVRS--SKPAWPTWRN 71
GRARW+MP IPALWEA AG S EV S + +WP WR+
Sbjct: 62 GRARWVMPEIPALWEADAGGSLEVFSPGTLYSWP-WRS 98
>gi|197304733 cytochrome b-561 domain containing 1 isoform 5 [Homo
sapiens]
Length = 128
Score = 45.1 bits (105), Expect = 3e-05
Identities = 24/37 (64%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
Query: 36 GRARWLMPVIPALWEAKAGRSPEVRS--SKPAWPTWR 70
GRARW+MP IPALWEA AG S EV S + +WP WR
Sbjct: 62 GRARWVMPEIPALWEADAGGSLEVFSPGTLYSWP-WR 97
>gi|239747192 PREDICTED: similar to hCG2038988 [Homo sapiens]
Length = 141
Score = 43.5 bits (101), Expect = 8e-05
Identities = 19/24 (79%), Positives = 20/24 (83%)
Query: 43 PVIPALWEAKAGRSPEVRSSKPAW 66
PVIPALWEA+AG SPE RS PAW
Sbjct: 116 PVIPALWEAEAGGSPEPRSLTPAW 139
>gi|224451053 homeobox C14 [Homo sapiens]
Length = 188
Score = 42.4 bits (98), Expect = 2e-04
Identities = 18/20 (90%), Positives = 19/20 (95%)
Query: 37 RARWLMPVIPALWEAKAGRS 56
RARWL PVIPALWEA+AGRS
Sbjct: 3 RARWLTPVIPALWEAEAGRS 22
>gi|239747698 PREDICTED: similar to hCG1784039 [Homo sapiens]
Length = 161
Score = 41.2 bits (95), Expect = 4e-04
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 28 EHFENHWKGRARWLMPVIPALWEAKA 53
+ F+ + GRARWL PVIPALWEA+A
Sbjct: 53 DSFKEYSMGRARWLTPVIPALWEAEA 78
>gi|197304721 cytochrome b-561 domain containing 1 isoform 1 [Homo
sapiens]
Length = 251
Score = 40.8 bits (94), Expect = 5e-04
Identities = 18/23 (78%), Positives = 19/23 (82%)
Query: 36 GRARWLMPVIPALWEAKAGRSPE 58
GRARW+MP IPALWEA AG S E
Sbjct: 62 GRARWVMPEIPALWEADAGGSLE 84
>gi|18543327 tectonic family member 1 isoform 3 [Homo sapiens]
Length = 573
Score = 39.3 bits (90), Expect = 0.001
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 31 ENHWKGRARWLMPVIPALWEAKAGRSPEVRSSKPAWP 67
+N+ G+A W PVIPALWEA+A S EV S+ P
Sbjct: 233 DNNPAGQAYWFTPVIPALWEAEARGSLEVPDSRKKVP 269
>gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo
sapiens]
Length = 120
Score = 32.7 bits (73), Expect = 0.13
Identities = 16/22 (72%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
Query: 42 MPVIPALWEAKAGRSPEVRSSK 63
MP+IP+LWE AGRS E RSSK
Sbjct: 1 MPIIPSLWE--AGRSLEARSSK 20
>gi|239751084 PREDICTED: hypothetical protein XP_002347710 [Homo
sapiens]
Length = 120
Score = 32.7 bits (73), Expect = 0.13
Identities = 16/22 (72%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
Query: 42 MPVIPALWEAKAGRSPEVRSSK 63
MP+IP+LWE AGRS E RSSK
Sbjct: 1 MPIIPSLWE--AGRSLEARSSK 20
>gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo
sapiens]
Length = 120
Score = 32.7 bits (73), Expect = 0.13
Identities = 16/22 (72%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
Query: 42 MPVIPALWEAKAGRSPEVRSSK 63
MP+IP+LWE AGRS E RSSK
Sbjct: 1 MPIIPSLWE--AGRSLEARSSK 20
>gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens]
Length = 858
Score = 30.8 bits (68), Expect = 0.51
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 41 LMPVIPALWEAKAGRS 56
L PVIPALW+A+AGRS
Sbjct: 666 LPPVIPALWKAEAGRS 681
>gi|114155127 regulator of G-protein signalling 3 isoform 6 [Homo
sapiens]
Length = 1198
Score = 30.0 bits (66), Expect = 0.87
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 42 MPVIPALWEAKAGRS 56
MPVIPALWE + GRS
Sbjct: 1 MPVIPALWEVEMGRS 15
>gi|116089282 APG9 autophagy 9-like 1 [Homo sapiens]
Length = 839
Score = 29.3 bits (64), Expect = 1.5
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 61 SSKPAWPTWRNPIFTKNTKISQVLELFLNYQSLICALEKQKRQKGSLAIFCWSFQGGC 118
S++ W N + I Q+L F +Y ++ KR+ G+L CWS G C
Sbjct: 287 SNRILWIGIANFLLCPLILIWQILYAFFSYAEVL------KREPGALGARCWSLYGRC 338
>gi|116089287 APG9 autophagy 9-like 1 [Homo sapiens]
Length = 839
Score = 29.3 bits (64), Expect = 1.5
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 61 SSKPAWPTWRNPIFTKNTKISQVLELFLNYQSLICALEKQKRQKGSLAIFCWSFQGGC 118
S++ W N + I Q+L F +Y ++ KR+ G+L CWS G C
Sbjct: 287 SNRILWIGIANFLLCPLILIWQILYAFFSYAEVL------KREPGALGARCWSLYGRC 338
>gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo
sapiens]
Length = 230
Score = 28.1 bits (61), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 38 ARWLMPVIPALWEAKAGRSPEVRSSKP 64
ARW PVIP W+++ R P R +P
Sbjct: 175 ARWRTPVIPKCWDSR--REPPRRDPRP 199
>gi|117306169 prolylcarboxypeptidase isoform 2 preproprotein [Homo
sapiens]
Length = 517
Score = 28.1 bits (61), Expect = 3.3
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 64 PAWPTWRNPIFTKNTKIS---------QVLELFLNYQSLICALEKQKRQKGSLAIFCWSF 114
PAWP + KN +S Q L ++ NY + L + SL WS+
Sbjct: 323 PAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLNISETATSSLGTLGWSY 382
Query: 115 Q 115
Q
Sbjct: 383 Q 383
>gi|4826940 prolylcarboxypeptidase isoform 1 preproprotein [Homo
sapiens]
Length = 496
Score = 28.1 bits (61), Expect = 3.3
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 64 PAWPTWRNPIFTKNTKIS---------QVLELFLNYQSLICALEKQKRQKGSLAIFCWSF 114
PAWP + KN +S Q L ++ NY + L + SL WS+
Sbjct: 302 PAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLNISETATSSLGTLGWSY 361
Query: 115 Q 115
Q
Sbjct: 362 Q 362
>gi|22027482 neuronal PAS domain protein 1 [Homo sapiens]
Length = 590
Score = 28.1 bits (61), Expect = 3.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 112 WSFQGGCVSKRPDVPSLKSQKPKRKRITGRKRLSK 146
W F G + K P P L++Q+ ++ R R R K
Sbjct: 26 WDFLPGLMVKAPSGPCLQAQRKEKSRNAARSRRGK 60
>gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]
Length = 904
Score = 27.7 bits (60), Expect = 4.3
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 46 PALWEAKAGRSPEVRSSKPAWPTWRNPIFTKNTKI 80
P+ WE AG SP R+S PA P NP T T +
Sbjct: 284 PSAWEPAAGNSP-ARASVPAAP---NPAATSATSV 314
>gi|110611239 alpha-L-iduronidase precursor [Homo sapiens]
Length = 653
Score = 27.3 bits (59), Expect = 5.6
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 17 IPTLSLMGGCREHFENHW-KGRARWLMPVIPALWEAKAGRSPEVRSSKPAWPTWRNPIFT 75
+P LMG HF + K + ++ +L GR SK + TW P
Sbjct: 127 LPGFELMGSASGHFTDFEDKQQVFEWKDLVSSLARRYIGRYGLAHVSKWNFETWNEPDHH 186
Query: 76 KNTKISQVLELFLNY 90
+S ++ FLNY
Sbjct: 187 DFDNVSMTMQGFLNY 201
>gi|118600985 zinc finger protein 91 [Homo sapiens]
Length = 1191
Score = 27.3 bits (59), Expect = 5.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 41 LMPVIPALWEAKAGRS 56
+ PVIP LWEA+AG S
Sbjct: 1158 ITPVIPLLWEAEAGGS 1173
>gi|31543559 radial spoke 3 homolog [Homo sapiens]
Length = 560
Score = 26.9 bits (58), Expect = 7.4
Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 10/140 (7%)
Query: 13 PPIPIPTLSLMGGCREHFENHWKGRARWLMPV-IPALWEAKAGRSPEVRSSKPAWPTWRN 71
PP+ P L+ C H+ H G L P A K G P +S T R
Sbjct: 96 PPLLSPLLASRNPCPWHYL-HLSGSHNTLAPTCFKAKLHRKRGSQPPDMASALTDRTSRA 154
Query: 72 PIFTKNTKISQVLELFLN-YQSLICALEKQKRQKGSLAIF-------CWSFQGGCVSKRP 123
P T + L + Y+ + +++ G++ ++ Q G + RP
Sbjct: 155 PSTYTYTSRPRALPCQRSRYRDSLTQPDEEPMHYGNIMYDRRVIRGNTYALQTGPLLGRP 214
Query: 124 DVPSLKSQKPKRKRITGRKR 143
D L+ Q+ RKR RK+
Sbjct: 215 DSLELQRQREARKRALARKQ 234
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 26.9 bits (58), Expect = 7.4
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 11 PAPPIPIPTLSLMGGCREHFENHWKGRARWLMPVIPALWEAKAGRSPEVRSSKP 64
P PP P PT +GG R + R RW A+A +P+ R S P
Sbjct: 24 PPPPPPPPTSGPIGGLRS--RHRGSSRGRWA--------AAQAEVAPKTRLSSP 67
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 26.9 bits (58), Expect = 7.4
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 11 PAPPIPIPTLSLMGGCREHFENHWKGRARWLMPVIPALWEAKAGRSPEVRSSKP 64
P PP P PT +GG R + R RW A+A +P+ R S P
Sbjct: 24 PPPPPPPPTSGPIGGLRS--RHRGSSRGRWA--------AAQAEVAPKTRLSSP 67
>gi|94680976 coiled-coil domain containing 112 isoform 1 [Homo
sapiens]
Length = 529
Score = 26.9 bits (58), Expect = 7.4
Identities = 18/68 (26%), Positives = 27/68 (39%)
Query: 70 RNPIFTKNTKISQVLELFLNYQSLICALEKQKRQKGSLAIFCWSFQGGCVSKRPDVPSLK 129
R IF K LF N Q ++++R+K LA+ W Q LK
Sbjct: 319 REEIFKLKEKADNTPVLFHNKQEDNQKQKEEQRKKQKLAVEAWKKQKSIEMSMKCASQLK 378
Query: 130 SQKPKRKR 137
++ K K+
Sbjct: 379 EEEEKEKK 386
>gi|145580595 coiled-coil domain containing 112 isoform 2 [Homo
sapiens]
Length = 446
Score = 26.9 bits (58), Expect = 7.4
Identities = 18/68 (26%), Positives = 27/68 (39%)
Query: 70 RNPIFTKNTKISQVLELFLNYQSLICALEKQKRQKGSLAIFCWSFQGGCVSKRPDVPSLK 129
R IF K LF N Q ++++R+K LA+ W Q LK
Sbjct: 236 REEIFKLKEKADNTPVLFHNKQEDNQKQKEEQRKKQKLAVEAWKKQKSIEMSMKCASQLK 295
Query: 130 SQKPKRKR 137
++ K K+
Sbjct: 296 EEEEKEKK 303
>gi|16975496 cortactin binding protein 2 [Homo sapiens]
Length = 1663
Score = 26.9 bits (58), Expect = 7.4
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 52 KAGRSPEVRSSKPAWPTWRNP-IFTKNTKISQVLELFLNYQSLICALEKQKRQKGSLAI 109
K SP +S + + PTW P + T+ K + +L N + +L KQK + L++
Sbjct: 1457 KVNTSPRRKSGRFSLPTWNKPDLSTEGMKNKTISQLNCNRNA---SLSKQKSLENDLSL 1512
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,888,596
Number of Sequences: 37866
Number of extensions: 301574
Number of successful extensions: 842
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 826
Number of HSP's gapped (non-prelim): 30
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.