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Search of human proteins with 9506861
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|9506861 hypothetical protein LOC55924 isoform 1 [Homo
sapiens]
(297 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|9506861 hypothetical protein LOC55924 isoform 1 [Homo sapiens] 622 e-179
gi|39545575 hypothetical protein LOC55924 isoform 2 [Homo sapiens] 587 e-168
gi|42766424 hypothetical protein LOC389119 [Homo sapiens] 80 2e-15
gi|148806874 hypothetical protein LOC54754 [Homo sapiens] 37 0.027
gi|113865921 hypothetical protein LOC441457 [Homo sapiens] 35 0.061
gi|239752979 PREDICTED: hypothetical protein XP_002345320 [Homo ... 35 0.079
gi|19923830 pre-B-cell leukemia homeobox interacting protein 1 [... 35 0.079
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 34 0.14
gi|223646109 family with sequence similarity 157, member A [Homo... 33 0.23
gi|223646111 family with sequence similarity 157, member B [Homo... 33 0.23
gi|209862789 microtubule associated monoxygenase, calponin and L... 33 0.23
gi|221139761 zinc finger protein 853 [Homo sapiens] 33 0.30
gi|239745655 PREDICTED: family with sequence similarity 157, mem... 33 0.30
gi|208022703 modulator of retrovirus infection [Homo sapiens] 33 0.30
gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens] 32 0.52
gi|156104878 glutaminase [Homo sapiens] 32 0.52
gi|4758220 XAP-5 protein [Homo sapiens] 32 0.67
gi|33286446 opioid growth factor receptor [Homo sapiens] 32 0.67
gi|239508696 PREDICTED: hypothetical protein [Homo sapiens] 32 0.67
gi|5902084 silver homolog [Homo sapiens] 32 0.67
gi|112734845 collagen, type XX, alpha 1 [Homo sapiens] 32 0.67
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 32 0.67
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 32 0.67
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 32 0.67
gi|239747560 PREDICTED: hypothetical protein XP_002347649 [Homo ... 32 0.88
gi|239741434 PREDICTED: hypothetical protein XP_002342199 [Homo ... 32 0.88
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 32 0.88
gi|239743047 PREDICTED: similar to family with sequence similari... 31 1.1
gi|239757944 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|169171742 PREDICTED: hypothetical protein LOC442676 [Homo sap... 31 1.5
>gi|9506861 hypothetical protein LOC55924 isoform 1 [Homo sapiens]
Length = 297
Score = 622 bits (1605), Expect = e-179
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MTMESREMDCYLRRLKQELMSMKEVGDGLQDQMNCMMGALQELKLLQVQTALEQLEISGG 60
MTMESREMDCYLRRLKQELMSMKEVGDGLQDQMNCMMGALQELKLLQVQTALEQLEISGG
Sbjct: 1 MTMESREMDCYLRRLKQELMSMKEVGDGLQDQMNCMMGALQELKLLQVQTALEQLEISGG 60
Query: 61 GPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLP 120
GPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLP
Sbjct: 61 GPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLP 120
Query: 121 RTQPHQSCAQQGPERVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGE 180
RTQPHQSCAQQGPERVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGE
Sbjct: 121 RTQPHQSCAQQGPERVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGE 180
Query: 181 KGETGGAREPKGEKGQPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPES 240
KGETGGAREPKGEKGQPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPES
Sbjct: 181 KGETGGAREPKGEKGQPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPES 240
Query: 241 RTGRSQKVKKRSLSKGSGHFPFPGTGEHRRGENPPTSCPKALEHSPSGFDINTAVWV 297
RTGRSQKVKKRSLSKGSGHFPFPGTGEHRRGENPPTSCPKALEHSPSGFDINTAVWV
Sbjct: 241 RTGRSQKVKKRSLSKGSGHFPFPGTGEHRRGENPPTSCPKALEHSPSGFDINTAVWV 297
>gi|39545575 hypothetical protein LOC55924 isoform 2 [Homo sapiens]
Length = 282
Score = 587 bits (1514), Expect = e-168
Identities = 279/281 (99%), Positives = 281/281 (100%)
Query: 17 QELMSMKEVGDGLQDQMNCMMGALQELKLLQVQTALEQLEISGGGPVPGSPEGPRTQCEH 76
++LMSMKEVGDGLQDQMNCMMGALQELKLLQVQTALEQLEISGGGPVPGSPEGPRTQCEH
Sbjct: 2 RQLMSMKEVGDGLQDQMNCMMGALQELKLLQVQTALEQLEISGGGPVPGSPEGPRTQCEH 61
Query: 77 PCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERV 136
PCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERV
Sbjct: 62 PCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERV 121
Query: 137 EPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETGGAREPKGEKGQ 196
EPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETGGAREPKGEKGQ
Sbjct: 122 EPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETGGAREPKGEKGQ 181
Query: 197 PQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPESRTGRSQKVKKRSLSKG 256
PQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPESRTGRSQKVKKRSLSKG
Sbjct: 182 PQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPESRTGRSQKVKKRSLSKG 241
Query: 257 SGHFPFPGTGEHRRGENPPTSCPKALEHSPSGFDINTAVWV 297
SGHFPFPGTGEHRRGENPPTSCPKALEHSPSGFDINTAVWV
Sbjct: 242 SGHFPFPGTGEHRRGENPPTSCPKALEHSPSGFDINTAVWV 282
>gi|42766424 hypothetical protein LOC389119 [Homo sapiens]
Length = 287
Score = 80.5 bits (197), Expect = 2e-15
Identities = 75/243 (30%), Positives = 110/243 (45%), Gaps = 43/243 (17%)
Query: 1 MTMESREMDCYLRRLKQELMSMKEVGD-------------GLQDQMNCMM---GALQELK 44
M M S +D +L +L+ EL+ ++ G G Q + + GAL+E
Sbjct: 1 MDMHSARLDSFLSQLRWELLCGRDTGSPSMPGPLQPTSQTGPDVQPSHQLRASGALEEDS 60
Query: 45 LLQVQTALEQLE---------ISGGGPVPGSPEGPR--TQCEHPCWEGGRGPA--RPTVC 91
+ V+ E+ E + GGP + + ++ W P RP
Sbjct: 61 VCCVEEEEEEEEEAVVTEDRDAALGGPREHALDWDSGFSEVSGSTWREEELPVSQRP--- 117
Query: 92 SPSSQPSLG-----SSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERVEPDDWTSTLM 146
+PS+QP S PS V PR + + + +E +DWT+ L+
Sbjct: 118 APSAQPLRRQCLSVSGLPMPSRAPVASVPPVHHPRPKSTPDACLEHWQGLEAEDWTAALL 177
Query: 147 SRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETGG----AREPKGEKGQPQELGR 202
+RGR+RQPLVLGDN FADLV NW++LP E G E G+ GG AR P+ G ++L R
Sbjct: 178 NRGRSRQPLVLGDNCFADLVHNWMELP--ETGSEGGDGGGHRARARPPQFLLGLSEQLRR 235
Query: 203 RFA 205
R A
Sbjct: 236 RLA 238
>gi|148806874 hypothetical protein LOC54754 [Homo sapiens]
Length = 756
Score = 36.6 bits (83), Expect = 0.027
Identities = 36/142 (25%), Positives = 50/142 (35%), Gaps = 32/142 (22%)
Query: 64 PGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKF---PSHRSVCGRDLAPLP 120
P P P + GP PT C P +P + TK P A LP
Sbjct: 315 PRGPPAPEVVKQPVYLPSKDGPKAPTACLPPPRPQRPAETKAHLPPPRPQRPAETNAHLP 374
Query: 121 RTQPHQSCAQQGPERVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGE 180
+P + + PE + P ++V ++D+ E G
Sbjct: 375 PPRPQRPAETKVPEEIPP-------------------------EVVQEYVDIMEELLGSH 409
Query: 181 KGETG---GAREPKGEKGQPQE 199
G+TG G RE KG+ QPQE
Sbjct: 410 PGDTGEPEGQRE-KGKVEQPQE 430
>gi|113865921 hypothetical protein LOC441457 [Homo sapiens]
Length = 492
Score = 35.4 bits (80), Expect = 0.061
Identities = 35/139 (25%), Positives = 49/139 (35%), Gaps = 41/139 (29%)
Query: 64 PGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQ 123
P P P + GP PT C P +P + TK A LP +
Sbjct: 315 PRGPPAPEVVKQPVYLPSKDGPKAPTACLPPPRPQRPAETK------------AHLPPPR 362
Query: 124 PHQSCAQQGPERVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGE 183
P + + PE + P ++V ++D+ E G G+
Sbjct: 363 PPRPAETKVPEEIPP-------------------------EVVQEYVDIMEELLGSHPGD 397
Query: 184 TG---GAREPKGEKGQPQE 199
TG G RE KG+ QPQE
Sbjct: 398 TGEPEGQRE-KGKVEQPQE 415
>gi|239752979 PREDICTED: hypothetical protein XP_002345320 [Homo
sapiens]
Length = 243
Score = 35.0 bits (79), Expect = 0.079
Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 76 HPCWEGGRGPA-RPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPE 134
HP GPA R T PSSQPS G+++ F + S RDL P H +C QQG +
Sbjct: 100 HPSPSCFSGPAERSTERWPSSQPSCGAASTFGAVDSP-ERDLD--PEVAVHSNC-QQGQD 155
Query: 135 RVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETG----GAREP 190
+D T G++ VG W ++ E +G ++G G R
Sbjct: 156 GALGEDEDRT-------------GNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHD 202
Query: 191 KGEKGQPQEL 200
+ E G PQ L
Sbjct: 203 EAEGGIPQRL 212
>gi|19923830 pre-B-cell leukemia homeobox interacting protein 1
[Homo sapiens]
Length = 731
Score = 35.0 bits (79), Expect = 0.079
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 6 REMDCYLRRLKQELMSMKEVGDGLQDQMNCMMGALQELKLLQ--VQTALEQLEISGGGPV 63
R + L+ K+EL S+ GL+++ + GALQ+ + Q +++ L+QL G
Sbjct: 283 RLLQAQLQAQKEELQSLMHQPKGLEEENAQLRGALQQGEAFQRALESELQQLRARLQGLE 342
Query: 64 PGSPEGPRTQCEHPCWEGGRGP 85
GP + C GGRGP
Sbjct: 343 ADCVRGP----DGVCLSGGRGP 360
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 34.3 bits (77), Expect = 0.14
Identities = 46/160 (28%), Positives = 60/160 (37%), Gaps = 42/160 (26%)
Query: 64 PGSPEGPRTQCEHPCWEGGRG-PARPTVCSPSSQP-SLGSSTKFPSHRSVCGRDLAPLPR 121
P P GP+ + P +G G P++P P +P S+G R G D AP P+
Sbjct: 227 PKGPPGPKGEPGVPGKKGDDGTPSQPGPPGPKGEPGSMGP-------RGENGVDGAPGPK 279
Query: 122 TQP-HQSCAQQGPERVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKG-- 178
+P H+ R P +G GD V D G LD + G
Sbjct: 280 GEPGHRGTDGAAGPRGAPG-------LKGEQ------GDTVVIDYDGRILDALKGPPGPQ 326
Query: 179 ---------GEKGETG--------GAREPKGEKGQPQELG 201
G KGE G G + PKG+KG P E G
Sbjct: 327 GPPGPPGIPGAKGELGLPGAPGIDGEKGPKGQKGDPGEPG 366
>gi|223646109 family with sequence similarity 157, member A [Homo
sapiens]
Length = 383
Score = 33.5 bits (75), Expect = 0.23
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 185 GGAREPKG--EKGQP----QELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVP 238
GGA P G E+ QP LGRR L+ N + + + +P +LL+ G MVP
Sbjct: 231 GGAVIPTGTPERAQPPPPQDPLGRRRWLSRNTWGPWPGTTQPPSPQLLRNDWGSCGFMVP 290
Query: 239 ESRTGR----SQK---VKKRSLSKGSGHFPFPGTGEHRRGENP-PTSCP 279
E+ G+ SQ+ +++ ++SK P+ H+R +P PT+ P
Sbjct: 291 EAARGKVFQDSQEGAHIRRETVSKSVCAEPW----RHQRARDPAPTNFP 335
>gi|223646111 family with sequence similarity 157, member B [Homo
sapiens]
Length = 384
Score = 33.5 bits (75), Expect = 0.23
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 185 GGAREPKG--EKGQP----QELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVP 238
GGA P G E+ QP LGRR L+ N + + + +P +LL+ G MVP
Sbjct: 232 GGAVIPTGTPERAQPPPPQDPLGRRRWLSRNTWGPWPGTTQPPSPQLLRNDWGSCGFMVP 291
Query: 239 ESRTGR----SQK---VKKRSLSKGSGHFPFPGTGEHRRGENP-PTSCP 279
E+ G+ SQ+ +++ ++SK P+ H+R +P PT+ P
Sbjct: 292 EAARGKVFQDSQEGAHIRRETVSKSVCAEPW----RHQRARDPAPTNFP 336
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 33.5 bits (75), Expect = 0.23
Identities = 55/205 (26%), Positives = 79/205 (38%), Gaps = 40/205 (19%)
Query: 83 RGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERVEP-DDW 141
R P P SP QP + +ST PS +C + P P T+ Q P R +P
Sbjct: 1234 RTPVSPG--SPQPQPPVAASTPPPSPLPICSQ---PQPSTEATVPSPTQSPIRFQPAPAK 1288
Query: 142 TSTLM----------SRGRNRQPLVLGDNV-FADLVGN-WLDLPEL-----------EKG 178
TST + ++ R PL + + + +DLV W+ E+ KG
Sbjct: 1289 TSTPLAPLPVQSQSDTKDRLGSPLAVDEALRRSDLVEEFWMKSAEIRRSLGLTPVDRSKG 1348
Query: 179 GEKGETGGAREPKGEKG-----QPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWV 233
E A P K PQ+ G +I K+ L +P+ + L
Sbjct: 1349 PEPSFPTPAFRPVSLKSYSVEKSPQDEGLHLLKPLSIPKR-LGLPKPEGEPL-----SLP 1402
Query: 234 TPMVPESRTGRSQKVKKRSLSKGSG 258
TP P R RS + ++R LS SG
Sbjct: 1403 TPRSPSDRELRSAQEERRELSSSSG 1427
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 33.1 bits (74), Expect = 0.30
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 52 LEQLEISGGGP--VPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHR 109
L+ LE G GP + G G +Q E E P RP V +P + T+ P R
Sbjct: 29 LQCLEDGGPGPDTLSGGSGGSESQEEEEPQERNSSPQRPAVSAPVGASEIAEETR-PGQR 87
Query: 110 SVCGRDL--APLPRTQPHQSCAQQGPERVE 137
+ + L P P+ QP QQ +E
Sbjct: 88 ELQLQQLEQQPEPQQQPQHEQLQQPQPHLE 117
>gi|239745655 PREDICTED: family with sequence similarity 157, member
C [Homo sapiens]
Length = 387
Score = 33.1 bits (74), Expect = 0.30
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 185 GGAREPKG--EKGQPQE----LGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVP 238
GGA P G E+ QP LGRR L+ N + + + +P +LL+ G MVP
Sbjct: 235 GGAVIPTGTPERAQPPPPQDLLGRRRWLSRNTWGPWPGTTQPPSPQLLRNDWGSCGFMVP 294
Query: 239 ESRTGR----SQK---VKKRSLSKGSGHFPFPGTGEHRRGENP-PTSCP 279
E+ G+ SQ+ +++ ++SK P+ H+R +P PT+ P
Sbjct: 295 EAARGKVFQDSQEGAHIRRETVSKSVCAEPW----RHQRARDPAPTNFP 339
>gi|208022703 modulator of retrovirus infection [Homo sapiens]
Length = 157
Score = 33.1 bits (74), Expect = 0.30
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 74 CEHPCWEGGRGPARPTVCSPSSQPSLGSST-KFPSHRSVCGRDLAPLPRTQPHQSCAQQG 132
CE P G P CS S S GSS+ + S + L+P R S +
Sbjct: 79 CEQPALAGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAPGLSPSQRPGGSSSACSRS 138
Query: 133 PERVEPDD 140
PE E +D
Sbjct: 139 PEEEEEED 146
>gi|16753205 ubiquilin 1 isoform 2 [Homo sapiens]
Length = 561
Score = 32.3 bits (72), Expect = 0.52
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 6/116 (5%)
Query: 11 YLRRLKQELMSMKEVGDGLQ--DQMNCMMGALQELKLLQVQTALEQLEISGGGPVPGSPE 68
Y+R + Q L ++ +Q D ++ M LLQ+Q L+ L G +PG
Sbjct: 399 YMRSMMQSLSQNPDLAAQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGFTP 458
Query: 69 GPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQP 124
G GG + +PS S + T P H+ + L L P
Sbjct: 459 GLGALGS----TGGSSGTNGSNATPSENTSPTAGTTEPGHQQFIQQMLQALAGVNP 510
>gi|156104878 glutaminase [Homo sapiens]
Length = 669
Score = 32.3 bits (72), Expect = 0.52
Identities = 30/99 (30%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 38 GALQELKLLQVQTALEQLEISGGGPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQP 97
G L+ Q L + GG P G R HP W GG PA P SS P
Sbjct: 20 GVSATLRRAQPLVTLCRRPRGGGRPAAGPAAAARL---HPWWGGGGWPAEPLARGLSSSP 76
Query: 98 S--LGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPE 134
S L K +H P P P + A GP+
Sbjct: 77 SEILQELGKGSTH---------PQPGVSPPAAPAAPGPK 106
>gi|4758220 XAP-5 protein [Homo sapiens]
Length = 339
Score = 32.0 bits (71), Expect = 0.67
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 15/118 (12%)
Query: 172 LPELEKGGEKGETGGAREPKGEKGQPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPG 231
L E E+GGE+ E E + E+ + R+ ++ FL PDRDR +E+
Sbjct: 124 LEEEEEGGEEEEEAAMYEEEMEREEITTKKRKLGKNPDVDTSFL----PDRDR--EEEEN 177
Query: 232 WVTPMVPESRTGRSQKVKKRSLS------KGSGHFPFPGTGEHRRGENPPTSCPKALE 283
+ + + + +K+K + GSGH T + R+G KALE
Sbjct: 178 RLREELRQEWEAKQEKIKSEEIEITFSYWDGSGH---RRTVKMRKGNTMQQFLQKALE 232
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 32.0 bits (71), Expect = 0.67
Identities = 47/180 (26%), Positives = 66/180 (36%), Gaps = 26/180 (14%)
Query: 38 GALQELKLLQVQTALEQLEISGGGPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQP 97
G +L+ + + LE S GSP P +H GR C P
Sbjct: 287 GPQDKLRRFKPSSLPHPLEGSRKVEEEGSPGDP----DHEASTQGR------TCGPEHSK 336
Query: 98 SLGSSTKFPSHRSVCGRDLAPLPRTQPHQS--CAQQGPERVEPDDWTSTLMSRGRNRQPL 155
G + P RSV +D PL R+Q ++ + PE + P + + R QP
Sbjct: 337 GGGRVDEGPQPRSVEPQDAGPLERSQGDEAGGHGEDRPEPLSPKESKKRKLELSRREQPP 396
Query: 156 VLG--------DNVFADLVGNWLDLPELEKGGEKGETGGAREPKGEKGQP--QELGRRFA 205
+ + +L G L L G + E GG + GE QP Q LG R A
Sbjct: 397 TEPGPQSASEVEKIALNLEGCALSQGSLRTGTQ--EVGG--QDPGEAVQPCRQPLGARVA 452
Score = 28.9 bits (63), Expect = 5.7
Identities = 26/78 (33%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 61 GPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLP 120
GP P P G E P G PA PT P+ P S T P G + A P
Sbjct: 563 GPRPAGPAGDEP-AESPSETPGPSPAGPTRDEPAESP---SETPGPRPAGPAGDEPAESP 618
Query: 121 RTQPHQSCAQQGPERVEP 138
P A GP EP
Sbjct: 619 SETPGPRPA--GPAGDEP 634
>gi|239508696 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 32.0 bits (71), Expect = 0.67
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 51 ALEQLEISGGGPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRS 110
AL L+++ GP S + + Q H GP+RP++C PS+ S+++ H
Sbjct: 48 ALNFLKLTSPGPAHASLQPLQAQLLHL-----GGPSRPSLCLPSASTVPTSASQQILHAQ 102
Query: 111 VCGRDLAPLPRTQPHQS 127
+ P P +QP S
Sbjct: 103 LLPHCGPPKPSSQPFSS 119
>gi|5902084 silver homolog [Homo sapiens]
Length = 661
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 59 GGGPVPGSPEGPRTQCEHPCWEGGRGPARPTV-----CSPSSQPSLGSSTKFPSHRSVCG 113
G PVPG+ +G R E P G+ P V +P+++PS +S + P+ +
Sbjct: 302 GSSPVPGTTDGHRPTAEAPNTTAGQVPTTEVVGTTPGQAPTAEPSGTTSVQVPTTEVI-- 359
Query: 114 RDLAPLPRTQPHQSCAQQGPERVEPDDWTSTLMS 147
+ P P PE+V + T ++
Sbjct: 360 ---STAPVQMPTAESTGMTPEKVPVSEVMGTTLA 390
>gi|112734845 collagen, type XX, alpha 1 [Homo sapiens]
Length = 1284
Score = 32.0 bits (71), Expect = 0.67
Identities = 43/169 (25%), Positives = 58/169 (34%), Gaps = 29/169 (17%)
Query: 60 GGPVPGSPEGPRTQCEHPCWEGGRGPARPT-VCSPSSQPSLGSSTKFPSHRSVCGRDLAP 118
G P P P G + P +G GP P V L P H+ + GR
Sbjct: 1072 GPPGPQGPPGLPGRNGTPGEQGFPGPRGPPGVKGEKGDHGLPGLQGHPGHQGIPGR---- 1127
Query: 119 LPRTQPHQSCAQQGPERVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKG 178
QGP+ + + T+ L P G F + G E
Sbjct: 1128 ---------VGLQGPKGMRGLEGTAGL--------PGPPGPRGFQGMAGARGTSGERGPP 1170
Query: 179 GEKGETG--GAREPKGEKGQPQELGRRFALTANI-----FKKFLRSVRP 220
G G TG G + +GEKG+PQ L + L + F F + RP
Sbjct: 1171 GTVGPTGLPGPKGERGEKGEPQSLATLYQLVSQASHVSKFDSFHENTRP 1219
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 66 SPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTK--------FPSHRSVCGRDLA 117
+P+ P Q HP GG P P C +S P G T S S+ G
Sbjct: 475 APQPPFAQ--HPFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAASGGSIAGGSSC 532
Query: 118 PLPRTQPHQSCAQQGPERVEP 138
PLP Q + E P
Sbjct: 533 PLPTVQIKEEALDDAEEPESP 553
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 66 SPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTK--------FPSHRSVCGRDLA 117
+P+ P Q HP GG P P C +S P G T S S+ G
Sbjct: 1029 APQPPFAQ--HPFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAASGGSIAGGSSC 1086
Query: 118 PLPRTQPHQSCAQQGPERVEP 138
PLP Q + E P
Sbjct: 1087 PLPTVQIKEEALDDAEEPESP 1107
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 66 SPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTK--------FPSHRSVCGRDLA 117
+P+ P Q HP GG P P C +S P G T S S+ G
Sbjct: 1029 APQPPFAQ--HPFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAASGGSIAGGSSC 1086
Query: 118 PLPRTQPHQSCAQQGPERVEP 138
PLP Q + E P
Sbjct: 1087 PLPTVQIKEEALDDAEEPESP 1107
>gi|239747560 PREDICTED: hypothetical protein XP_002347649 [Homo
sapiens]
Length = 284
Score = 31.6 bits (70), Expect = 0.88
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 93 PSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERVEPDDWTSTLMSRGRNR 152
PSSQPS G+++ F + S RDL P H +C QQG + +D T
Sbjct: 159 PSSQPSCGAASTFGAVDSP-ERDLD--PEVAVHSNC-QQGQDGALGEDEDRT-------- 206
Query: 153 QPLVLGDNVFADLVGNWLDLPELEKGGEKGETG----GAREPKGEKGQPQEL 200
G++ VG W ++ E +G ++G G R + E G PQ L
Sbjct: 207 -----GNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEGGIPQRL 253
>gi|239741434 PREDICTED: hypothetical protein XP_002342199 [Homo
sapiens]
Length = 284
Score = 31.6 bits (70), Expect = 0.88
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 93 PSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERVEPDDWTSTLMSRGRNR 152
PSSQPS G+++ F + S RDL P H +C QQG + +D T
Sbjct: 159 PSSQPSCGAASTFGAVDSP-ERDLD--PEVAVHSNC-QQGQDGALGEDEDRT-------- 206
Query: 153 QPLVLGDNVFADLVGNWLDLPELEKGGEKGETG----GAREPKGEKGQPQEL 200
G++ VG W ++ E +G ++G G R + E G PQ L
Sbjct: 207 -----GNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEGGIPQRL 253
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 31.6 bits (70), Expect = 0.88
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 62 PVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLP 120
P PG+P P+ HP G GP + V S P+L +ST PS G APLP
Sbjct: 978 PHPGAPHPPQVMLLHPPQSHG-GPPQGAV-PQSGVPALSAST--PSPYPYIGHPQAPLP 1032
>gi|239743047 PREDICTED: similar to family with sequence similarity
157, member B [Homo sapiens]
Length = 384
Score = 31.2 bits (69), Expect = 1.1
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 18/108 (16%)
Query: 186 GAREPKG--EKGQP----QELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPE 239
GA P G E+ QP LGRR L+ N + + + +P +LL+ G MVPE
Sbjct: 233 GAVIPTGTPERAQPPPPQDPLGRRRWLSRNTWGPWPGTTQPPSPQLLRNDWGSCGFMVPE 292
Query: 240 SRTGR----SQK---VKKRSLSKGSGHFPFPGTGEHRRGENP-PTSCP 279
+ G+ SQ+ +++ ++SK P+ H+R +P PT+ P
Sbjct: 293 AARGKVFQDSQEGAHIRRETVSKSVCAEPW----RHQRARDPAPTNFP 336
>gi|239757944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 600
Score = 30.8 bits (68), Expect = 1.5
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 230 PGWVTPMVPESRTGR--SQKVKKRSLSKGSGHFPFPGTGEHRRGENPPTSCPKALEHSPS 287
PGW E TGR S+K + GS FPF G R + P S P L HSP
Sbjct: 94 PGW--GCWDEESTGRVVSEKGGANQID-GSSQFPFL-PGHRGRTHHFPHSAPSGLGHSPG 149
Query: 288 GFDINTA 294
D A
Sbjct: 150 NHDTGAA 156
>gi|169171742 PREDICTED: hypothetical protein LOC442676 [Homo
sapiens]
Length = 679
Score = 30.8 bits (68), Expect = 1.5
Identities = 25/91 (27%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 51 ALEQLEISGGGPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRS 110
AL L + P GP C HP +G P P SQP G P S
Sbjct: 470 ALAPLTLISSSRSHSRPPGPL--CTHPPLQGFFCPC------PDSQPCGGPDPTSPGSDS 521
Query: 111 VCGRDLAPLPRTQPHQSCAQQGPERVEPDDW 141
D PLP + H P + W
Sbjct: 522 DAALDAPPLPLPESHPCLTPPHPAQALVQPW 552
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,872,042
Number of Sequences: 37866
Number of extensions: 873863
Number of successful extensions: 3109
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 2993
Number of HSP's gapped (non-prelim): 294
length of query: 297
length of database: 18,247,518
effective HSP length: 102
effective length of query: 195
effective length of database: 14,385,186
effective search space: 2805111270
effective search space used: 2805111270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.